Strain Fitness in Escherichia fergusonii Becca around EFB2_02695

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,851,391	+				-1.2
2,851,391	+				+1.0
2,851,392	-				+1.6
2,851,392	-				+0.4
2,851,392	-				+0.9
2,851,392	-				+0.8
2,851,403	+				+1.7
2,851,403	+				+1.4
2,851,403	+				+0.3
2,851,403	+				-0.3
2,851,404	-				-1.1
2,851,406	+				-2.7
2,851,406	+				-0.8
2,851,406	+				-3.0
2,851,406	+				-0.3
2,851,406	+				+0.7
2,851,406	+				+0.9
2,851,407	-				+0.5
2,851,407	-				-1.2
2,851,407	-				+1.8
2,851,407	-				-1.3
2,851,439	+				+0.9
2,851,439	+				-0.9
2,851,439	+				-0.8
2,851,439	+				+0.9
2,851,439	+				-3.2
2,851,439	+				-0.9
2,851,439	+				+0.2
2,851,439	+				+0.0
2,851,439	+				+0.2
2,851,439	+				-0.4
2,851,439	+				-0.8
2,851,439	+				+0.2
2,851,440	-				-0.6
2,851,440	-				+0.6
2,851,440	-				-1.8
2,851,440	-				-1.6
2,851,440	-				+0.7
2,851,440	-				-1.8
2,851,440	-				+1.0
2,851,440	-				-1.3
2,851,440	-				-0.6
2,851,440	-				-0.8
2,851,440	-				+1.1
2,851,440	-				+0.2
2,851,440	-				-1.5
2,851,442	+				+0.4
2,851,442	+				+0.2
2,851,442	+				+0.9
2,851,443	-				-0.7
2,851,455	+				-0.3
2,851,455	+				-1.8
2,851,455	+				+1.4
2,851,456	-				-2.0
2,851,468	+		EFB2_02694	0.11	+1.1
2,851,469	-		EFB2_02694	0.11	+1.8
2,851,469	-		EFB2_02694	0.11	-0.6
2,851,472	+		EFB2_02694	0.12	+0.9
2,851,472	+		EFB2_02694	0.12	+2.2
2,851,473	-		EFB2_02694	0.12	+1.4
2,851,473	-		EFB2_02694	0.12	-1.4
2,851,495	+		EFB2_02694	0.14	-0.3
2,851,495	+		EFB2_02694	0.14	+2.1
2,851,495	+		EFB2_02694	0.14	-0.9
2,851,495	+		EFB2_02694	0.14	-0.1
2,851,495	+		EFB2_02694	0.14	+0.1
2,851,520	+		EFB2_02694	0.17	-1.2
2,851,636	+		EFB2_02694	0.31	+0.2
2,851,636	+		EFB2_02694	0.31	+0.0
2,851,636	+		EFB2_02694	0.31	+1.8
2,851,636	+		EFB2_02694	0.31	+0.4
2,851,637	-		EFB2_02694	0.31	-0.6
2,851,637	-		EFB2_02694	0.31	+1.2
2,851,637	-		EFB2_02694	0.31	+0.1
2,851,637	-		EFB2_02694	0.31	+0.8
2,851,637	-		EFB2_02694	0.31	-0.7
2,851,649	+		EFB2_02694	0.33	-2.8
2,851,692	+		EFB2_02694	0.38	+1.8
2,851,693	-		EFB2_02694	0.38	-0.3
2,851,724	+		EFB2_02694	0.42	-0.8
2,851,724	+		EFB2_02694	0.42	-1.3
2,851,724	+		EFB2_02694	0.42	+1.4
2,851,724	+		EFB2_02694	0.42	-0.2
2,851,725	-		EFB2_02694	0.42	+0.3
2,851,739	+		EFB2_02694	0.43	-1.7
2,851,740	-		EFB2_02694	0.43	+1.0
2,851,740	-		EFB2_02694	0.43	-0.7
2,851,744	+		EFB2_02694	0.44	+1.2
2,851,744	+		EFB2_02694	0.44	+1.0
2,851,744	+		EFB2_02694	0.44	+2.0
2,851,744	+		EFB2_02694	0.44	-0.9
2,851,744	+		EFB2_02694	0.44	-0.6
2,851,744	+		EFB2_02694	0.44	-0.1
2,851,744	+		EFB2_02694	0.44	-1.6
2,851,745	-		EFB2_02694	0.44	-0.3
2,851,745	-		EFB2_02694	0.44	+2.5
2,851,745	-		EFB2_02694	0.44	-0.8
2,851,769	+		EFB2_02694	0.47	+1.2
2,851,770	-		EFB2_02694	0.47	-0.3
2,851,770	-		EFB2_02694	0.47	-0.1
2,851,770	-		EFB2_02694	0.47	-1.7
2,851,786	+		EFB2_02694	0.49	+0.9
2,851,802	-		EFB2_02694	0.51	-0.9
2,851,802	-		EFB2_02694	0.51	+0.7
2,851,848	+		EFB2_02694	0.56	+1.9
2,851,848	+		EFB2_02694	0.56	-1.5
2,851,848	+		EFB2_02694	0.56	+0.4
2,851,849	-		EFB2_02694	0.56	+4.1
2,851,860	+		EFB2_02694	0.58	+0.5
2,851,860	+		EFB2_02694	0.58	-0.5
2,851,860	+		EFB2_02694	0.58	+0.9
2,851,860	+		EFB2_02694	0.58	+2.2
2,851,860	+		EFB2_02694	0.58	-0.7
2,851,860	+		EFB2_02694	0.58	-1.1
2,851,860	+		EFB2_02694	0.58	+0.0
2,851,860	+		EFB2_02694	0.58	-1.2
2,851,860	+		EFB2_02694	0.58	+0.1
2,851,860	+		EFB2_02694	0.58	-1.6
2,851,860	+		EFB2_02694	0.58	+0.5
2,851,860	+		EFB2_02694	0.58	-1.6
2,851,861	-		EFB2_02694	0.58	-2.1
2,851,861	-		EFB2_02694	0.58	-1.4
2,851,861	-		EFB2_02694	0.58	-2.5
2,851,861	-		EFB2_02694	0.58	+0.9
2,851,861	-		EFB2_02694	0.58	-0.6
2,851,861	-		EFB2_02694	0.58	-2.1
2,851,861	-		EFB2_02694	0.58	-0.6
2,851,861	-		EFB2_02694	0.58	-2.0
2,851,861	-		EFB2_02694	0.58	+1.7
2,851,861	-		EFB2_02694	0.58	-0.7
2,851,878	+		EFB2_02694	0.60	+0.7
2,851,878	+		EFB2_02694	0.60	+0.4
2,851,878	+		EFB2_02694	0.60	-2.2
2,851,878	+		EFB2_02694	0.60	-1.2
2,851,878	+		EFB2_02694	0.60	-1.1
2,851,878	+		EFB2_02694	0.60	-0.8
2,851,878	+		EFB2_02694	0.60	-0.3
2,851,878	+		EFB2_02694	0.60	-2.4
2,851,878	+		EFB2_02694	0.60	-0.0
2,851,878	+		EFB2_02694	0.60	+1.2
2,851,878	+		EFB2_02694	0.60	-1.6
2,851,878	+		EFB2_02694	0.60	+2.4
2,851,878	+		EFB2_02694	0.60	-1.8
2,851,878	+		EFB2_02694	0.60	+0.8
2,851,878	+		EFB2_02694	0.60	+0.7
2,851,878	+		EFB2_02694	0.60	+2.7
2,851,879	-		EFB2_02694	0.60	+0.4
2,851,879	-		EFB2_02694	0.60	-0.1
2,851,879	-		EFB2_02694	0.60	-0.1
2,851,879	-		EFB2_02694	0.60	-0.8
2,851,879	-		EFB2_02694	0.60	+1.1
2,851,879	-		EFB2_02694	0.60	+2.2
2,851,879	-		EFB2_02694	0.60	+2.2
2,851,879	-		EFB2_02694	0.60	+1.3
2,851,879	-		EFB2_02694	0.60	+1.2
2,851,879	-		EFB2_02694	0.60	+1.1
2,851,879	-		EFB2_02694	0.60	-2.2
2,851,879	-		EFB2_02694	0.60	-0.1
2,851,879	-		EFB2_02694	0.60	+1.6
2,851,879	-		EFB2_02694	0.60	-1.7
2,851,879	-		EFB2_02694	0.60	+0.4
2,851,879	-		EFB2_02694	0.60	+0.1
2,851,879	-		EFB2_02694	0.60	+0.0
2,851,879	-		EFB2_02694	0.60	+2.2
2,851,880	+		EFB2_02694	0.60	-3.6
2,851,880	+		EFB2_02694	0.60	+2.2
2,851,880	+		EFB2_02694	0.60	-2.1
2,851,880	+		EFB2_02694	0.60	-1.9
2,851,880	+		EFB2_02694	0.60	-2.1
2,851,880	+		EFB2_02694	0.60	+0.8
2,851,880	+		EFB2_02694	0.60	+0.2
2,851,880	+		EFB2_02694	0.60	-0.8
2,851,881	-		EFB2_02694	0.60	-1.1
2,851,881	-		EFB2_02694	0.60	-0.9
2,851,881	-		EFB2_02694	0.60	+2.6
2,851,881	-		EFB2_02694	0.60	+0.3
2,851,881	-		EFB2_02694	0.60	-1.5
2,851,881	-		EFB2_02694	0.60	+0.2
2,851,881	-		EFB2_02694	0.60	-1.8
2,851,881	-		EFB2_02694	0.60	+1.2
2,851,881	-		EFB2_02694	0.60	-3.3
2,851,923	-		EFB2_02694	0.65	+2.8
2,851,934	+		EFB2_02694	0.66	+0.9
2,851,934	+		EFB2_02694	0.66	-0.6
2,851,935	-		EFB2_02694	0.67	+1.2
2,851,989	+		EFB2_02694	0.73	+0.7
2,851,990	-		EFB2_02694	0.73	-0.1
2,851,990	-		EFB2_02694	0.73	-0.8
2,851,990	-		EFB2_02694	0.73	+0.0
2,851,990	-		EFB2_02694	0.73	+0.7
2,851,990	-		EFB2_02694	0.73	-0.9
2,851,990	-		EFB2_02694	0.73	+2.2
2,852,009	+		EFB2_02694	0.75	-0.6
2,852,028	+		EFB2_02694	0.78	+0.1
2,852,028	+		EFB2_02694	0.78	-3.2
2,852,028	+		EFB2_02694	0.78	-1.5
2,852,028	+		EFB2_02694	0.78	+0.0
2,852,028	+		EFB2_02694	0.78	+0.5
2,852,029	-		EFB2_02694	0.78	-1.3
2,852,029	-		EFB2_02694	0.78	-2.0
2,852,029	-		EFB2_02694	0.78	+0.2
2,852,029	-		EFB2_02694	0.78	-0.1
2,852,075	+		EFB2_02694	0.83	-0.8
2,852,075	+		EFB2_02694	0.83	+1.2
2,852,076	-		EFB2_02694	0.83	+0.1
2,852,090	+		EFB2_02694	0.85	+2.9
2,852,090	+		EFB2_02694	0.85	-1.2
2,852,090	+		EFB2_02694	0.85	-1.0
2,852,090	+		EFB2_02694	0.85	-0.6
2,852,090	+		EFB2_02694	0.85	+1.8
2,852,090	+		EFB2_02694	0.85	+0.1
2,852,090	+		EFB2_02694	0.85	+0.4
2,852,090	+		EFB2_02694	0.85	-1.0
2,852,090	+		EFB2_02694	0.85	-1.3
2,852,090	+		EFB2_02694	0.85	+0.5
2,852,090	+		EFB2_02694	0.85	+0.7
2,852,091	-		EFB2_02694	0.85	-1.2
2,852,091	-		EFB2_02694	0.85	-0.2
2,852,091	-		EFB2_02694	0.85	-1.2
2,852,091	-		EFB2_02694	0.85	-1.6
2,852,091	-		EFB2_02694	0.85	-0.8
2,852,091	-		EFB2_02694	0.85	+0.2
2,852,091	-		EFB2_02694	0.85	-1.7
2,852,091	-		EFB2_02694	0.85	-0.1
2,852,091	-		EFB2_02694	0.85	-1.7
2,852,091	-		EFB2_02694	0.85	-0.8
2,852,094	+		EFB2_02694	0.85	+0.5
2,852,094	+		EFB2_02694	0.85	+0.6
2,852,094	+		EFB2_02694	0.85	+0.2
2,852,094	+		EFB2_02694	0.85	+0.4
2,852,094	+		EFB2_02694	0.85	+0.8
2,852,094	+		EFB2_02694	0.85	+1.4
2,852,094	+		EFB2_02694	0.85	-1.5
2,852,095	-		EFB2_02694	0.86	-0.1
2,852,095	-		EFB2_02694	0.86	-0.6
2,852,095	-		EFB2_02694	0.86	+1.1
2,852,095	-		EFB2_02694	0.86	-0.6
2,852,095	-		EFB2_02694	0.86	+1.4
2,852,095	-		EFB2_02694	0.86	+1.0
2,852,095	-		EFB2_02694	0.86	-1.3
2,852,095	-		EFB2_02694	0.86	+0.8
2,852,095	-		EFB2_02694	0.86	-0.1
2,852,095	-		EFB2_02694	0.86	+1.9
2,852,095	-		EFB2_02694	0.86	-0.2
2,852,108	+		EFB2_02694	0.87	-1.5
2,852,108	+		EFB2_02694	0.87	+1.1
2,852,108	+		EFB2_02694	0.87	+1.7
2,852,108	+		EFB2_02694	0.87	+0.8
2,852,108	+		EFB2_02694	0.87	-1.8
2,852,108	+		EFB2_02694	0.87	-1.8
2,852,108	+		EFB2_02694	0.87	+0.1
2,852,108	+		EFB2_02694	0.87	-1.5
2,852,108	+		EFB2_02694	0.87	-0.9
2,852,108	+		EFB2_02694	0.87	-0.8
2,852,108	+		EFB2_02694	0.87	-1.7
2,852,108	+		EFB2_02694	0.87	-0.1
2,852,108	+		EFB2_02694	0.87	-2.3
2,852,108	+		EFB2_02694	0.87	+0.3
2,852,108	+		EFB2_02694	0.87	-1.9
2,852,108	+		EFB2_02694	0.87	+1.9
2,852,109	-		EFB2_02694	0.87	+0.6
2,852,109	-		EFB2_02694	0.87	-1.7
2,852,109	-		EFB2_02694	0.87	+1.0
2,852,109	-		EFB2_02694	0.87	+0.6
2,852,146	+				-0.7
2,852,146	+				-1.1
2,852,146	+				-2.5
2,852,147	-				-0.3
2,852,147	-				-0.4
2,852,147	-				+0.4
2,852,147	-				-1.6
2,852,147	-				-0.1
2,852,147	-				-0.9
2,852,158	+				+0.7
2,852,159	-				-0.9
2,852,160	+				-0.1
2,852,160	+				+1.2
2,852,160	+				+0.2
2,852,160	+				-1.2
2,852,160	+				-2.1
2,852,160	+				+2.1
2,852,160	+				+1.1
2,852,160	+				-0.2
2,852,161	-				-1.0
2,852,161	-				-1.3
2,852,161	-				+1.9
2,852,167	+				+1.2
2,852,167	+				-2.6
2,852,167	+				+2.1
2,852,168	-				+1.8
2,852,207	+				+2.0
2,852,208	-				+1.1
2,852,231	-				-0.6
2,852,238	+				+0.9
2,852,238	+				+0.7
2,852,238	+				-0.4
2,852,238	+				-0.1
2,852,239	-				-0.8
2,852,292	+				+0.6
2,852,292	+				+1.0
2,852,292	+				-0.3
2,852,292	+				-0.1
2,852,293	-				+2.7
2,852,293	-				-1.2
2,852,293	-				-0.9
2,852,293	-				+2.7
2,852,300	+				-1.6
2,852,300	+				-1.3
2,852,300	+				+1.2
2,852,320	+				+0.5
2,852,321	-				-0.1
2,852,321	-				-0.9
2,852,358	+				-1.1
2,852,411	+		EFB2_02695	0.41	+0.7
2,852,411	+		EFB2_02695	0.41	+1.2
2,852,411	+		EFB2_02695	0.41	-0.4
2,852,411	+		EFB2_02695	0.41	-1.5
2,852,411	+		EFB2_02695	0.41	-0.3
2,852,411	+		EFB2_02695	0.41	-1.3
2,852,411	+		EFB2_02695	0.41	-0.8
2,852,411	+		EFB2_02695	0.41	+2.2
2,852,411	+		EFB2_02695	0.41	+1.0
2,852,471	+				-0.0
2,852,471	+				+1.3
2,852,471	+				+0.2
2,852,471	+				+0.9
2,852,471	+				+1.4
2,852,471	+				+0.6
2,852,475	+				-0.8
2,852,475	+				-0.1
2,852,475	+				+1.3
2,852,475	+				-0.3
2,852,475	+				+0.5
2,852,475	+				-0.3
2,852,475	+				-0.6
2,852,475	+				-1.9
2,852,475	+				+1.0
2,852,475	+				+2.7
2,852,475	+				-1.2
2,852,475	+				+0.0
2,852,475	+				-2.5
2,852,475	+				-2.2
2,852,475	+				-1.2
2,852,475	+				+0.4
2,852,475	+				+0.3
2,852,475	+				+0.2
2,852,475	+				-0.3
2,852,475	+				-0.9
2,852,476	-				-1.8
2,852,480	+				+0.6
2,852,480	+				-0.9
2,852,480	+				+0.9
2,852,480	+				-0.3
2,852,480	+				+0.3
2,852,480	+				-0.7
2,852,487	+				-1.8
2,852,487	+				+0.1
2,852,584	+				+0.6
2,852,584	+				+1.2
2,852,620	+				-1.2
2,852,624	+				+0.6
2,852,712	+				-0.8
2,852,793	+				+2.2
2,852,794	-				-0.9
2,852,828	-				-0.1
2,852,832	+				-2.4
2,852,844	+				-0.8
2,852,844	+				+2.2
2,852,844	+				+0.2
2,852,845	-				-1.6
2,852,845	-				+2.8
2,852,845	-				+3.7
2,852,845	-				-1.0
2,852,957	+				+2.2
2,852,958	-				-0.6
2,852,958	-				-2.1
2,852,958	-				-1.8
2,852,958	-				-1.1
2,852,973	-				+1.2
2,852,973	-				+0.2
2,852,973	-				-1.1
2,852,973	-				+1.0
2,853,009	-				+0.7
2,853,009	-				+1.0
2,853,009	-				-1.5
2,853,026	-				+0.0
2,853,026	-				+0.7
2,853,026	-				-0.3
2,853,053	-				+0.9
2,853,106	+				+1.1
2,853,107	-				-0.9
2,853,182	-		EFB2_02697	0.14	-1.9
2,853,252	-		EFB2_02697	0.20	-0.5
2,853,332	-		EFB2_02697	0.27	-0.7
2,853,332	-		EFB2_02697	0.27	+0.4
2,853,354	+		EFB2_02697	0.29	-1.6
2,853,355	-		EFB2_02697	0.29	-1.6
2,853,386	-		EFB2_02697	0.31	-0.9
2,853,434	+		EFB2_02697	0.35	-2.7
2,853,435	-		EFB2_02697	0.35	-1.9
2,853,435	-		EFB2_02697	0.35	+0.1
2,853,437	+		EFB2_02697	0.36	+1.1
2,853,437	+		EFB2_02697	0.36	-1.8
2,853,437	+		EFB2_02697	0.36	-1.9
2,853,438	-		EFB2_02697	0.36	-0.6
2,853,438	-		EFB2_02697	0.36	-3.5
2,853,438	-		EFB2_02697	0.36	-1.7