Strain Fitness in Escherichia fergusonii Becca around EFB2_02533

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,666,532	+				+3.9
2,666,538	+				-0.5
2,666,553	+				+1.3
2,666,594	-				+2.9
2,666,684	+		EFB2_02531	0.12	+1.6
2,666,684	+		EFB2_02531	0.12	-2.0
2,666,685	-		EFB2_02531	0.13	+1.3
2,666,769	+		EFB2_02531	0.33	-1.0
2,666,769	+		EFB2_02531	0.33	+3.0
2,666,769	+		EFB2_02531	0.33	+1.8
2,666,770	-		EFB2_02531	0.33	+0.3
2,666,770	-		EFB2_02531	0.33	-0.0
2,666,770	-		EFB2_02531	0.33	-0.7
2,666,786	+		EFB2_02531	0.37	+2.3
2,666,805	+		EFB2_02531	0.42	-0.1
2,666,805	+		EFB2_02531	0.42	-0.5
2,666,805	+		EFB2_02531	0.42	-1.0
2,666,805	+		EFB2_02531	0.42	+0.3
2,666,805	+		EFB2_02531	0.42	+0.3
2,666,805	+		EFB2_02531	0.42	-2.3
2,666,805	+		EFB2_02531	0.42	-1.5
2,666,805	+		EFB2_02531	0.42	-0.1
2,666,806	-		EFB2_02531	0.42	+1.7
2,666,806	-		EFB2_02531	0.42	-2.3
2,666,806	-		EFB2_02531	0.42	-0.3
2,666,806	-		EFB2_02531	0.42	+0.2
2,666,806	-		EFB2_02531	0.42	-1.7
2,666,806	-		EFB2_02531	0.42	-1.2
2,666,839	+		EFB2_02531	0.50	-1.3
2,666,839	+		EFB2_02531	0.50	-0.9
2,666,839	+		EFB2_02531	0.50	+2.3
2,666,840	-		EFB2_02531	0.50	+1.0
2,666,840	-		EFB2_02531	0.50	-1.5
2,666,840	-		EFB2_02531	0.50	+0.2
2,666,840	-		EFB2_02531	0.50	-0.5
2,666,841	+		EFB2_02531	0.51	+0.6
2,666,841	+		EFB2_02531	0.51	-0.9
2,666,841	+		EFB2_02531	0.51	+0.8
2,666,841	+		EFB2_02531	0.51	+2.3
2,666,841	+		EFB2_02531	0.51	+0.4
2,666,841	+		EFB2_02531	0.51	-0.5
2,666,841	+		EFB2_02531	0.51	+0.6
2,666,842	-		EFB2_02531	0.51	-0.5
2,666,842	-		EFB2_02531	0.51	+0.2
2,666,842	-		EFB2_02531	0.51	+1.0
2,666,865	-		EFB2_02531	0.56	-1.8
2,666,890	+		EFB2_02531	0.63	-2.4
2,666,891	-		EFB2_02531	0.63	-0.3
2,666,896	-		EFB2_02531	0.64	+0.2
2,666,926	+		EFB2_02531	0.71	+0.7
2,666,926	+		EFB2_02531	0.71	-2.8
2,666,927	-		EFB2_02531	0.72	+0.3
2,666,927	-		EFB2_02531	0.72	-0.7
2,666,927	-		EFB2_02531	0.72	-1.4
2,667,043	+				+3.3
2,667,044	-				-2.7
2,667,044	-				-2.2
2,667,058	+				-0.1
2,667,164	+		EFB2_02532	0.60	-0.1
2,667,177	+		EFB2_02532	0.68	+0.7
2,667,177	+		EFB2_02532	0.68	+1.6
2,667,178	-		EFB2_02532	0.68	+1.9
2,667,197	+		EFB2_02532	0.79	-1.0
2,667,197	+		EFB2_02532	0.79	+0.7
2,667,198	-		EFB2_02532	0.80	+0.2
2,667,198	-		EFB2_02532	0.80	+2.3
2,667,198	-		EFB2_02532	0.80	+1.7
2,667,220	+				-1.6
2,667,220	+				-0.0
2,667,220	+				+0.0
2,667,220	+				-0.3
2,667,220	+				+2.0
2,667,220	+				-1.4
2,667,220	+				+0.4
2,667,220	+				-1.5
2,667,221	-				-0.9
2,667,221	-				-0.8
2,667,221	-				-1.2
2,667,221	-				+1.0
2,667,221	-				+0.8
2,667,221	-				+0.1
2,667,227	+				-1.3
2,667,227	+				+1.8
2,667,233	+				-1.9
2,667,233	+				-0.5
2,667,233	+				-2.6
2,667,233	+				-0.5
2,667,233	+				+1.7
2,667,233	+				+0.3
2,667,234	-				-1.3
2,667,234	-				-1.5
2,667,234	-				+1.2
2,667,234	-				+0.1
2,667,234	-				+1.0
2,667,234	-				+0.7
2,667,252	+				+2.3
2,667,252	+				+0.3
2,667,252	+				-0.4
2,667,259	+				+0.2
2,667,259	+				+2.7
2,667,259	+				-0.8
2,667,259	+				-0.5
2,667,259	+				+0.4
2,667,259	+				+0.7
2,667,259	+				+0.8
2,667,260	-				+0.8
2,667,260	-				+1.3
2,667,260	-				-1.3
2,667,260	-				+3.2
2,667,260	-				-0.2
2,667,260	-				+2.3
2,667,265	+				-0.4
2,667,265	+				-0.4
2,667,265	+				+1.1
2,667,265	+				+2.1
2,667,265	+				-0.8
2,667,265	+				-1.5
2,667,266	-				+1.7
2,667,266	-				-1.4
2,667,266	-				+1.3
2,667,266	-				-0.0
2,667,319	+				-0.2
2,667,319	+				+1.1
2,667,319	+				-1.0
2,667,320	-				+0.2
2,667,320	-				+0.3
2,667,321	+				-1.8
2,667,321	+				+2.9
2,667,321	+				-0.7
2,667,321	+				+0.3
2,667,321	+				+1.8
2,667,321	+				-0.8
2,667,321	+				-1.3
2,667,322	-				+1.7
2,667,322	-				-1.0
2,667,322	-				-1.6
2,667,322	-				+1.2
2,667,340	+				+1.0
2,667,340	+				-0.4
2,667,340	+				-1.2
2,667,340	+				+1.0
2,667,341	-				-1.0
2,667,341	-				+0.6
2,667,341	-				-0.2
2,667,398	-				-0.5
2,667,398	-				+2.3
2,667,399	+				+0.7
2,667,421	+				-0.8
2,667,422	-				-1.4
2,667,425	+				-0.5
2,667,425	+				+1.2
2,667,425	+				+0.6
2,667,425	+				+2.0
2,667,425	+				+1.0
2,667,425	+				-2.1
2,667,426	-				+2.0
2,667,426	-				-2.6
2,667,426	-				-1.0
2,667,426	-				-1.4
2,667,464	+				-1.2
2,667,464	+				+1.0
2,667,464	+				+1.3
2,667,464	+				-0.1
2,667,464	+				-0.9
2,667,464	+				-2.8
2,667,464	+				+1.1
2,667,464	+				-0.9
2,667,464	+				+0.9
2,667,464	+				+1.4
2,667,464	+				-2.0
2,667,464	+				-0.9
2,667,464	+				-0.5
2,667,464	+				-1.2
2,667,464	+				+1.2
2,667,464	+				+0.1
2,667,464	+				+0.8
2,667,464	+				-0.3
2,667,464	+				+0.9
2,667,464	+				-0.5
2,667,464	+				-3.3
2,667,464	+				+1.4
2,667,464	+				-0.3
2,667,464	+				-0.4
2,667,464	+				+0.4
2,667,464	+				-0.1
2,667,464	+				+1.3
2,667,464	+				+2.1
2,667,464	+				+0.3
2,667,465	-				-2.0
2,667,465	-				+1.7
2,667,465	-				-3.4
2,667,465	-				-1.4
2,667,465	-				-1.6
2,667,465	-				-0.3
2,667,465	-				-1.7
2,667,465	-				-1.3
2,667,465	-				+1.1
2,667,465	-				-1.2
2,667,465	-				+0.2
2,667,465	-				+2.0
2,667,465	-				-1.4
2,667,465	-				-0.9
2,667,465	-				-2.1
2,667,466	+				-1.0
2,667,466	+				+0.0
2,667,467	-				+0.8
2,667,481	-				-0.7
2,667,506	-				-1.2
2,667,557	-				-1.2
2,667,557	-				-0.0
2,667,576	-				+1.0
2,667,603	+				-1.3
2,667,603	+				-1.3
2,667,603	+				-0.5
2,667,604	-				+2.9
2,667,648	+				+0.5
2,667,698	+		EFB2_02533	0.13	-0.3
2,667,699	-		EFB2_02533	0.13	-0.9
2,667,699	-		EFB2_02533	0.13	+1.9
2,667,699	-		EFB2_02533	0.13	+0.7
2,667,699	-		EFB2_02533	0.13	+1.9
2,667,699	-		EFB2_02533	0.13	-2.5
2,667,699	-		EFB2_02533	0.13	+0.6
2,667,699	-		EFB2_02533	0.13	+0.7
2,667,756	+		EFB2_02533	0.17	-0.5
2,667,756	+		EFB2_02533	0.17	+0.9
2,667,756	+		EFB2_02533	0.17	-0.9
2,667,757	-		EFB2_02533	0.17	-2.4
2,667,788	+		EFB2_02533	0.19	+0.3
2,667,788	+		EFB2_02533	0.19	+0.9
2,667,788	+		EFB2_02533	0.19	+0.3
2,667,788	+		EFB2_02533	0.19	+0.9
2,667,789	-		EFB2_02533	0.19	-0.0
2,667,821	+		EFB2_02533	0.21	-1.8
2,667,821	+		EFB2_02533	0.21	+0.8
2,667,821	+		EFB2_02533	0.21	-1.0
2,667,822	-		EFB2_02533	0.21	-0.2
2,667,822	-		EFB2_02533	0.21	+0.6
2,667,839	+		EFB2_02533	0.23	-0.2
2,667,839	+		EFB2_02533	0.23	-1.4
2,667,839	+		EFB2_02533	0.23	+0.9
2,667,839	+		EFB2_02533	0.23	+0.1
2,667,839	+		EFB2_02533	0.23	+1.0
2,667,839	+		EFB2_02533	0.23	+1.8
2,667,839	+		EFB2_02533	0.23	+0.0
2,667,839	+		EFB2_02533	0.23	+1.5
2,667,840	-		EFB2_02533	0.23	+2.5
2,667,840	-		EFB2_02533	0.23	+0.7
2,667,840	-		EFB2_02533	0.23	-1.2
2,667,874	+		EFB2_02533	0.25	+1.5
2,667,877	+		EFB2_02533	0.25	+0.7
2,667,893	+		EFB2_02533	0.26	+0.2
2,667,893	+		EFB2_02533	0.26	+0.3
2,667,893	+		EFB2_02533	0.26	+0.2
2,667,893	+		EFB2_02533	0.26	-1.5
2,667,893	+		EFB2_02533	0.26	-2.5
2,667,893	+		EFB2_02533	0.26	-1.3
2,667,893	+		EFB2_02533	0.26	-1.3
2,667,893	+		EFB2_02533	0.26	-1.4
2,667,893	+		EFB2_02533	0.26	+2.4
2,667,893	+		EFB2_02533	0.26	-2.0
2,667,893	+		EFB2_02533	0.26	+0.4
2,667,893	+		EFB2_02533	0.26	+0.5
2,667,893	+		EFB2_02533	0.26	-0.3
2,667,893	+		EFB2_02533	0.26	-1.6
2,667,893	+		EFB2_02533	0.26	+1.1
2,667,893	+		EFB2_02533	0.26	-1.3
2,667,893	+		EFB2_02533	0.26	+3.3
2,667,893	+		EFB2_02533	0.26	+0.9
2,667,893	+		EFB2_02533	0.26	+0.7
2,667,893	+		EFB2_02533	0.26	-0.9
2,667,893	+		EFB2_02533	0.26	+1.0
2,667,893	+		EFB2_02533	0.26	-0.4
2,667,893	+		EFB2_02533	0.26	+0.4
2,667,893	+		EFB2_02533	0.26	-1.3
2,667,893	+		EFB2_02533	0.26	-0.3
2,667,894	-		EFB2_02533	0.26	+0.3
2,667,894	-		EFB2_02533	0.26	+0.8
2,667,894	-		EFB2_02533	0.26	+1.5
2,667,894	-		EFB2_02533	0.26	-1.2
2,667,894	-		EFB2_02533	0.26	-0.9
2,667,894	-		EFB2_02533	0.26	+0.3
2,667,894	-		EFB2_02533	0.26	+0.4
2,667,895	+		EFB2_02533	0.26	-1.1
2,667,895	+		EFB2_02533	0.26	-1.3
2,667,895	+		EFB2_02533	0.26	+0.6
2,667,895	+		EFB2_02533	0.26	+0.5
2,667,895	+		EFB2_02533	0.26	-1.4
2,667,895	+		EFB2_02533	0.26	-0.6
2,667,895	+		EFB2_02533	0.26	-0.6
2,667,895	+		EFB2_02533	0.26	+0.7
2,667,895	+		EFB2_02533	0.26	-0.9
2,667,895	+		EFB2_02533	0.26	+1.2
2,667,895	+		EFB2_02533	0.26	+0.0
2,667,895	+		EFB2_02533	0.26	-1.0
2,667,895	+		EFB2_02533	0.26	+1.7
2,667,896	-		EFB2_02533	0.26	+1.3
2,667,896	-		EFB2_02533	0.26	+1.4
2,667,896	-		EFB2_02533	0.26	+2.1
2,667,976	+		EFB2_02533	0.32	+0.5
2,667,976	+		EFB2_02533	0.32	+0.8
2,667,976	+		EFB2_02533	0.32	-2.6
2,667,976	+		EFB2_02533	0.32	+0.8
2,667,976	+		EFB2_02533	0.32	-1.5
2,667,976	+		EFB2_02533	0.32	+2.1
2,667,976	+		EFB2_02533	0.32	-0.7
2,667,976	+		EFB2_02533	0.32	-1.2
2,667,976	+		EFB2_02533	0.32	-2.4
2,667,977	-		EFB2_02533	0.32	-0.0
2,667,977	-		EFB2_02533	0.32	+0.9
2,667,977	-		EFB2_02533	0.32	+0.8
2,667,977	-		EFB2_02533	0.32	-2.0
2,668,025	-		EFB2_02533	0.35	-2.5
2,668,027	+		EFB2_02533	0.35	-0.9
2,668,027	+		EFB2_02533	0.35	-1.4
2,668,027	+		EFB2_02533	0.35	+0.8
2,668,028	-		EFB2_02533	0.35	+0.3
2,668,028	-		EFB2_02533	0.35	-0.5
2,668,028	-		EFB2_02533	0.35	-1.0
2,668,044	+		EFB2_02533	0.36	+1.6
2,668,044	+		EFB2_02533	0.36	-1.9
2,668,045	-		EFB2_02533	0.36	-0.5
2,668,064	-		EFB2_02533	0.38	-1.0
2,668,119	+		EFB2_02533	0.41	-1.6
2,668,119	+		EFB2_02533	0.41	+0.8
2,668,185	+		EFB2_02533	0.46	+0.7
2,668,185	+		EFB2_02533	0.46	+1.8
2,668,185	+		EFB2_02533	0.46	+0.7
2,668,185	+		EFB2_02533	0.46	-0.3
2,668,185	+		EFB2_02533	0.46	+0.5
2,668,186	-		EFB2_02533	0.46	-0.3
2,668,219	+		EFB2_02533	0.48	-1.1
2,668,237	+		EFB2_02533	0.49	+0.3
2,668,237	+		EFB2_02533	0.49	-2.7
2,668,237	+		EFB2_02533	0.49	+1.6
2,668,238	-		EFB2_02533	0.49	-3.5
2,668,238	-		EFB2_02533	0.49	-1.2
2,668,238	-		EFB2_02533	0.49	-2.6
2,668,238	-		EFB2_02533	0.49	-1.0
2,668,238	-		EFB2_02533	0.49	-1.9
2,668,262	-		EFB2_02533	0.51	+1.9
2,668,302	-		EFB2_02533	0.53	+2.6
2,668,327	+		EFB2_02533	0.55	-0.9
2,668,327	+		EFB2_02533	0.55	-0.7
2,668,327	+		EFB2_02533	0.55	+2.3
2,668,327	+		EFB2_02533	0.55	+1.3
2,668,328	-		EFB2_02533	0.55	-0.5
2,668,328	-		EFB2_02533	0.55	-1.4
2,668,328	-		EFB2_02533	0.55	-2.3
2,668,328	-		EFB2_02533	0.55	-0.7
2,668,328	-		EFB2_02533	0.55	+1.6
2,668,328	-		EFB2_02533	0.55	-0.6
2,668,332	+		EFB2_02533	0.55	+1.4
2,668,332	+		EFB2_02533	0.55	+1.4
2,668,333	-		EFB2_02533	0.56	-0.2
2,668,333	-		EFB2_02533	0.56	+0.3
2,668,333	-		EFB2_02533	0.56	+1.4
2,668,349	+		EFB2_02533	0.57	+1.6
2,668,349	+		EFB2_02533	0.57	-2.8
2,668,403	+		EFB2_02533	0.60	+1.8
2,668,403	+		EFB2_02533	0.60	+0.8
2,668,403	+		EFB2_02533	0.60	-0.3
2,668,404	-		EFB2_02533	0.60	+2.5
2,668,404	-		EFB2_02533	0.60	+0.3
2,668,404	-		EFB2_02533	0.60	-0.5
2,668,417	+		EFB2_02533	0.61	-1.0
2,668,417	+		EFB2_02533	0.61	-1.7
2,668,417	+		EFB2_02533	0.61	+0.3
2,668,418	-		EFB2_02533	0.61	-2.0
2,668,469	+		EFB2_02533	0.65	+1.6
2,668,469	+		EFB2_02533	0.65	+1.4
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