Strain Fitness in Escherichia fergusonii Becca around EFB2_02495

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,620,138	+				-0.3
2,620,163	+				-1.1
2,620,262	+				+0.9
2,620,263	-				+1.3
2,620,266	+				+0.3
2,620,298	+				-0.4
2,620,307	-				+0.7
2,620,336	+				+1.9
2,620,336	+				-0.4
2,620,336	+				-1.9
2,620,336	+				-0.0
2,620,337	-				+0.3
2,620,337	-				-1.6
2,620,363	+				+1.8
2,620,377	+				+0.1
2,620,383	+				-0.5
2,620,383	+				+1.9
2,620,476	+		EFB2_02494	0.21	-0.3
2,620,492	+		EFB2_02494	0.23	-0.2
2,620,492	+		EFB2_02494	0.23	-1.3
2,620,512	-		EFB2_02494	0.26	+1.5
2,620,555	+		EFB2_02494	0.32	+1.3
2,620,555	+		EFB2_02494	0.32	-0.5
2,620,609	+		EFB2_02494	0.40	-0.4
2,620,634	-		EFB2_02494	0.43	-0.8
2,620,644	+		EFB2_02494	0.44	-0.5
2,620,644	+		EFB2_02494	0.44	-0.3
2,620,681	+		EFB2_02494	0.50	-0.2
2,620,687	+		EFB2_02494	0.50	-1.1
2,620,697	-		EFB2_02494	0.52	-0.3
2,620,723	+		EFB2_02494	0.56	-1.7
2,620,724	-		EFB2_02494	0.56	+1.5
2,620,728	+		EFB2_02494	0.56	+2.1
2,620,741	+		EFB2_02494	0.58	-1.6
2,620,742	-		EFB2_02494	0.58	-2.3
2,620,745	-		EFB2_02494	0.59	+1.1
2,620,850	-		EFB2_02494	0.73	-0.5
2,620,862	+		EFB2_02494	0.75	+0.9
2,620,862	+		EFB2_02494	0.75	-0.5
2,620,863	-		EFB2_02494	0.75	+0.5
2,620,882	+		EFB2_02494	0.78	-2.3
2,620,938	+		EFB2_02494	0.86	-0.3
2,620,939	-		EFB2_02494	0.86	+2.3
2,620,997	+				+0.1
2,621,017	+				+0.2
2,621,049	+				-0.7
2,621,053	+				-0.1
2,621,054	-				-0.6
2,621,056	+				-2.3
2,621,110	+				+1.6
2,621,110	+				-1.1
2,621,111	-				-1.8
2,621,115	+				-0.0
2,621,116	-				+1.0
2,621,116	-				+1.5
2,621,129	+				+2.3
2,621,129	+				+0.2
2,621,130	-				+5.1
2,621,132	+				+2.5
2,621,132	+				-1.0
2,621,154	+				-1.0
2,621,155	-				+3.1
2,621,171	+				-1.6
2,621,204	-				-0.3
2,621,207	-				-1.7
2,621,265	+				+0.3
2,621,268	+				-1.9
2,621,269	-				+0.7
2,621,292	+				+0.3
2,621,293	-				+0.6
2,621,293	-				-0.7
2,621,293	-				+0.3
2,621,311	+				+0.6
2,621,346	+		EFB2_02495	0.10	-0.1
2,621,347	-		EFB2_02495	0.10	-0.3
2,621,353	-		EFB2_02495	0.10	-0.1
2,621,364	+		EFB2_02495	0.11	-1.0
2,621,364	+		EFB2_02495	0.11	-1.0
2,621,364	+		EFB2_02495	0.11	-0.6
2,621,367	+		EFB2_02495	0.11	-1.0
2,621,394	+		EFB2_02495	0.12	-0.2
2,621,435	+		EFB2_02495	0.13	-0.3
2,621,436	-		EFB2_02495	0.13	+0.3
2,621,573	+		EFB2_02495	0.19	+2.3
2,621,573	+		EFB2_02495	0.19	-1.0
2,621,573	+		EFB2_02495	0.19	-0.7
2,621,574	-		EFB2_02495	0.19	-1.0
2,621,574	-		EFB2_02495	0.19	-1.1
2,621,574	-		EFB2_02495	0.19	+1.3
2,621,575	+		EFB2_02495	0.19	-0.7
2,621,575	+		EFB2_02495	0.19	-0.3
2,621,575	+		EFB2_02495	0.19	-0.5
2,621,575	+		EFB2_02495	0.19	-1.6
2,621,576	-		EFB2_02495	0.19	+0.3
2,621,576	-		EFB2_02495	0.19	-0.1
2,621,576	-		EFB2_02495	0.19	-2.1
2,621,652	+		EFB2_02495	0.22	+1.4
2,621,652	+		EFB2_02495	0.22	+0.0
2,621,658	+		EFB2_02495	0.22	-2.8
2,621,658	+		EFB2_02495	0.22	+0.9
2,621,664	+		EFB2_02495	0.22	+0.6
2,621,664	+		EFB2_02495	0.22	+0.7
2,621,673	+		EFB2_02495	0.22	-0.2
2,621,710	+		EFB2_02495	0.24	-1.5
2,621,710	+		EFB2_02495	0.24	+0.3
2,621,711	-		EFB2_02495	0.24	+2.3
2,621,717	-		EFB2_02495	0.24	+0.3
2,621,748	+		EFB2_02495	0.25	+0.5
2,621,749	-		EFB2_02495	0.25	-1.5
2,621,782	+		EFB2_02495	0.26	-1.5
2,621,784	+		EFB2_02495	0.27	-0.8
2,621,784	+		EFB2_02495	0.27	-2.2
2,621,796	+		EFB2_02495	0.27	-0.0
2,621,818	-		EFB2_02495	0.28	+0.7
2,621,835	+		EFB2_02495	0.28	+0.3
2,621,889	+		EFB2_02495	0.31	+0.3
2,621,889	+		EFB2_02495	0.31	+0.4
2,621,889	+		EFB2_02495	0.31	+0.1
2,621,889	+		EFB2_02495	0.31	-1.0
2,621,893	+		EFB2_02495	0.31	+0.3
2,621,893	+		EFB2_02495	0.31	+0.8
2,621,894	-		EFB2_02495	0.31	-2.0
2,622,003	+		EFB2_02495	0.35	-1.7
2,622,032	+		EFB2_02495	0.36	-0.6
2,622,063	+		EFB2_02495	0.37	-1.7
2,622,085	-		EFB2_02495	0.38	-1.6
2,622,085	-		EFB2_02495	0.38	-1.0
2,622,137	+		EFB2_02495	0.40	-2.5
2,622,137	+		EFB2_02495	0.40	-3.2
2,622,138	-		EFB2_02495	0.40	-0.5
2,622,156	+		EFB2_02495	0.41	-1.1
2,622,167	+		EFB2_02495	0.41	+0.9
2,622,167	+		EFB2_02495	0.41	-1.0
2,622,167	+		EFB2_02495	0.41	-0.2
2,622,167	+		EFB2_02495	0.41	+0.7
2,622,167	+		EFB2_02495	0.41	+0.7
2,622,167	+		EFB2_02495	0.41	+0.5
2,622,167	+		EFB2_02495	0.41	+3.0
2,622,167	+		EFB2_02495	0.41	+2.0
2,622,167	+		EFB2_02495	0.41	-1.5
2,622,167	+		EFB2_02495	0.41	+2.4
2,622,168	-		EFB2_02495	0.41	-0.0
2,622,168	-		EFB2_02495	0.41	+2.3
2,622,169	+		EFB2_02495	0.41	-0.2
2,622,169	+		EFB2_02495	0.41	+3.3
2,622,169	+		EFB2_02495	0.41	-0.3
2,622,169	+		EFB2_02495	0.41	-1.8
2,622,169	+		EFB2_02495	0.41	+0.2
2,622,169	+		EFB2_02495	0.41	-0.0
2,622,169	+		EFB2_02495	0.41	+0.7
2,622,169	+		EFB2_02495	0.41	-0.7
2,622,169	+		EFB2_02495	0.41	+0.6
2,622,169	+		EFB2_02495	0.41	+0.3
2,622,170	-		EFB2_02495	0.41	+0.4
2,622,170	-		EFB2_02495	0.41	+2.3
2,622,170	-		EFB2_02495	0.41	-0.3
2,622,170	-		EFB2_02495	0.41	+2.7
2,622,170	-		EFB2_02495	0.41	-0.7
2,622,170	-		EFB2_02495	0.41	-2.9
2,622,170	-		EFB2_02495	0.41	+1.9
2,622,170	-		EFB2_02495	0.41	-0.1
2,622,170	-		EFB2_02495	0.41	+2.2
2,622,170	-		EFB2_02495	0.41	+0.3
2,622,212	-		EFB2_02495	0.43	-2.4
2,622,214	-		EFB2_02495	0.43	-0.7
2,622,214	-		EFB2_02495	0.43	-1.4
2,622,242	-		EFB2_02495	0.44	+2.0
2,622,281	+		EFB2_02495	0.45	+1.3
2,622,373	-		EFB2_02495	0.49	+1.6
2,622,417	+		EFB2_02495	0.50	+1.0
2,622,417	+		EFB2_02495	0.50	-0.9
2,622,429	+		EFB2_02495	0.51	-0.7
2,622,536	-		EFB2_02495	0.55	+1.2
2,622,541	-		EFB2_02495	0.55	-1.9
2,622,553	+		EFB2_02495	0.56	-0.9
2,622,574	+		EFB2_02495	0.56	-2.3
2,622,575	-		EFB2_02495	0.56	-0.9
2,622,575	-		EFB2_02495	0.56	-1.6
2,622,575	-		EFB2_02495	0.56	-2.1
2,622,575	-		EFB2_02495	0.56	-1.6
2,622,592	+		EFB2_02495	0.57	-0.0
2,622,593	-		EFB2_02495	0.57	+1.7
2,622,635	+		EFB2_02495	0.59	-3.0
2,622,635	+		EFB2_02495	0.59	-1.5
2,622,640	-		EFB2_02495	0.59	+1.3
2,622,686	+		EFB2_02495	0.61	+3.1
2,622,686	+		EFB2_02495	0.61	+0.7
2,622,848	+		EFB2_02495	0.67	+0.6
2,622,848	+		EFB2_02495	0.67	-1.4
2,622,888	+		EFB2_02495	0.68	-0.9
2,622,922	-		EFB2_02495	0.69	-0.5
2,622,955	+		EFB2_02495	0.71	-0.3
2,622,960	+		EFB2_02495	0.71	-0.9
2,622,995	+		EFB2_02495	0.72	+0.4
2,622,995	+		EFB2_02495	0.72	-0.0
2,622,995	+		EFB2_02495	0.72	+0.5
2,623,040	-		EFB2_02495	0.74	+2.6
2,623,071	+		EFB2_02495	0.75	-0.4
2,623,074	+		EFB2_02495	0.75	+0.7
2,623,124	-		EFB2_02495	0.77	-0.5
2,623,145	-		EFB2_02495	0.78	+1.3
2,623,276	-		EFB2_02495	0.83	+0.4
2,623,287	-		EFB2_02495	0.83	-0.7
2,623,331	+		EFB2_02495	0.85	-0.3
2,623,331	+		EFB2_02495	0.85	+0.8
2,623,351	+		EFB2_02495	0.86	-1.0
2,623,351	+		EFB2_02495	0.86	+0.3
2,623,351	+		EFB2_02495	0.86	-1.7
2,623,352	-		EFB2_02495	0.86	+1.8
2,623,395	+		EFB2_02495	0.87	-0.5
2,623,396	-		EFB2_02495	0.87	-1.1
2,623,490	+				-0.7
2,623,491	-				-0.7
2,623,504	+				-3.3
2,623,512	+				+1.3
2,623,513	-				+1.7
2,623,659	+				-0.3
2,623,695	+				+1.0
2,623,700	+				-0.3
2,623,739	+				+0.6
2,623,816	+		EFB2_02496	0.13	+0.2
2,623,816	+		EFB2_02496	0.13	-1.3
2,623,817	-		EFB2_02496	0.14	+1.8
2,623,890	+		EFB2_02496	0.27	+0.9
2,623,964	-		EFB2_02496	0.41	-1.4
2,623,968	+		EFB2_02496	0.42	+1.3
2,623,968	+		EFB2_02496	0.42	-1.3
2,623,968	+		EFB2_02496	0.42	-1.5
2,623,968	+		EFB2_02496	0.42	+2.8
2,623,968	+		EFB2_02496	0.42	+1.1
2,623,969	-		EFB2_02496	0.42	-0.9
2,624,012	-		EFB2_02496	0.50	+0.8
2,624,035	+		EFB2_02496	0.55	-1.3
2,624,036	-		EFB2_02496	0.55	+1.5
2,624,053	-		EFB2_02496	0.58	-0.7
2,624,179	+		EFB2_02496	0.82	-0.0
2,624,180	-		EFB2_02496	0.82	-1.0
2,624,189	+		EFB2_02496	0.84	+1.7
2,624,257	+				+1.3
2,624,257	+				-1.1
2,624,316	+				+1.1
2,624,317	-				-0.9
2,624,320	+				-0.9
2,624,334	+				+0.6
2,624,335	-				+0.7
2,624,368	+		EFB2_02497	0.16	-0.5
2,624,369	-		EFB2_02497	0.16	-0.5
2,624,408	-		EFB2_02497	0.24	-0.0
2,624,426	-		EFB2_02497	0.27	-2.0
2,624,447	+		EFB2_02497	0.32	-0.2
2,624,449	+		EFB2_02497	0.32	+1.2
2,624,495	-		EFB2_02497	0.41	-0.9
2,624,497	+		EFB2_02497	0.41	+0.3
2,624,497	+		EFB2_02497	0.41	+1.3
2,624,498	-		EFB2_02497	0.42	-0.5
2,624,498	-		EFB2_02497	0.42	+0.6
2,624,577	-		EFB2_02497	0.57	+0.2
2,624,579	+		EFB2_02497	0.58	-1.6
2,624,708	-		EFB2_02497	0.83	-0.5
2,624,708	-		EFB2_02497	0.83	+3.0
2,624,719	+		EFB2_02497	0.86	-1.6