Strain Fitness in Escherichia fergusonii Becca around EFB2_02282

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,416,599	+		EFB2_02280	0.65	+0.4
2,416,599	+		EFB2_02280	0.65	-1.0
2,416,599	+		EFB2_02280	0.65	-0.2
2,416,599	+		EFB2_02280	0.65	+0.3
2,416,599	+		EFB2_02280	0.65	+1.6
2,416,599	+		EFB2_02280	0.65	-0.4
2,416,599	+		EFB2_02280	0.65	+1.7
2,416,599	+		EFB2_02280	0.65	-0.4
2,416,599	+		EFB2_02280	0.65	+2.0
2,416,599	+		EFB2_02280	0.65	-2.1
2,416,599	+		EFB2_02280	0.65	-1.5
2,416,599	+		EFB2_02280	0.65	-1.8
2,416,599	+		EFB2_02280	0.65	-0.0
2,416,599	+		EFB2_02280	0.65	+0.6
2,416,599	+		EFB2_02280	0.65	-0.1
2,416,599	+		EFB2_02280	0.65	+0.6
2,416,600	-		EFB2_02280	0.65	+1.3
2,416,600	-		EFB2_02280	0.65	+0.3
2,416,600	-		EFB2_02280	0.65	-2.5
2,416,600	-		EFB2_02280	0.65	+0.8
2,416,640	+		EFB2_02280	0.69	-0.7
2,416,749	+		EFB2_02280	0.80	+1.5
2,416,749	+		EFB2_02280	0.80	-0.5
2,416,749	+		EFB2_02280	0.80	-2.0
2,416,749	+		EFB2_02280	0.80	+0.7
2,416,749	+		EFB2_02280	0.80	-0.5
2,416,749	+		EFB2_02280	0.80	-1.1
2,416,749	+		EFB2_02280	0.80	-1.8
2,416,749	+		EFB2_02280	0.80	+0.5
2,416,750	-		EFB2_02280	0.80	+0.3
2,416,750	-		EFB2_02280	0.80	-1.6
2,416,784	+		EFB2_02280	0.84	+2.2
2,416,787	+		EFB2_02280	0.84	-1.3
2,416,787	+		EFB2_02280	0.84	-1.7
2,416,787	+		EFB2_02280	0.84	+1.6
2,416,787	+		EFB2_02280	0.84	-2.7
2,416,787	+		EFB2_02280	0.84	+0.3
2,416,788	-		EFB2_02280	0.84	-0.5
2,416,841	+		EFB2_02280	0.89	+1.3
2,416,841	+		EFB2_02280	0.89	+0.1
2,416,842	-		EFB2_02280	0.90	+0.7
2,416,856	+				-1.9
2,416,856	+				+1.8
2,416,856	+				-2.4
2,416,856	+				-0.3
2,416,857	-				-1.1
2,416,914	+				-0.4
2,416,914	+				-0.2
2,416,914	+				-2.2
2,416,960	+				+1.7
2,416,960	+				+1.2
2,416,960	+				-2.5
2,416,961	-				-0.7
2,416,961	-				-1.9
2,416,966	+				+1.8
2,416,966	+				-0.3
2,416,966	+				+2.9
2,416,966	+				-0.7
2,416,974	-				-1.8
2,416,991	+				-1.3
2,417,031	+				+1.3
2,417,031	+				-0.3
2,417,031	+				+0.9
2,417,031	+				-0.1
2,417,041	+				+0.9
2,417,041	+				+1.3
2,417,042	-				+0.3
2,417,042	-				+0.5
2,417,050	+				-0.1
2,417,072	+		EFB2_02281	0.12	+2.1
2,417,072	+		EFB2_02281	0.12	-0.3
2,417,072	+		EFB2_02281	0.12	-0.3
2,417,072	+		EFB2_02281	0.12	-2.8
2,417,072	+		EFB2_02281	0.12	-2.6
2,417,073	-		EFB2_02281	0.12	-0.0
2,417,121	+		EFB2_02281	0.21	-1.7
2,417,132	+		EFB2_02281	0.23	-1.0
2,417,132	+		EFB2_02281	0.23	-3.0
2,417,132	+		EFB2_02281	0.23	+0.6
2,417,132	+		EFB2_02281	0.23	+1.3
2,417,132	+		EFB2_02281	0.23	+1.3
2,417,132	+		EFB2_02281	0.23	+0.4
2,417,132	+		EFB2_02281	0.23	+0.7
2,417,132	+		EFB2_02281	0.23	+1.1
2,417,133	-		EFB2_02281	0.23	-0.6
2,417,133	-		EFB2_02281	0.23	-0.7
2,417,133	-		EFB2_02281	0.23	+1.1
2,417,249	+		EFB2_02281	0.44	-1.0
2,417,249	+		EFB2_02281	0.44	+4.2
2,417,249	+		EFB2_02281	0.44	+2.6
2,417,290	+		EFB2_02281	0.51	+1.3
2,417,290	+		EFB2_02281	0.51	+1.1
2,417,290	+		EFB2_02281	0.51	+0.7
2,417,302	+		EFB2_02281	0.54	-1.7
2,417,303	-		EFB2_02281	0.54	-1.7
2,417,327	+		EFB2_02281	0.58	-1.1
2,417,384	+		EFB2_02281	0.68	-0.1
2,417,384	+		EFB2_02281	0.68	+0.5
2,417,421	-		EFB2_02281	0.75	+1.9
2,417,432	-		EFB2_02281	0.77	-1.0
2,417,500	+		EFB2_02281	0.89	-2.7
2,417,500	+		EFB2_02281	0.89	+1.2
2,417,536	+				-2.0
2,417,536	+				-1.3
2,417,555	+				+1.2
2,417,555	+				+0.4
2,417,555	+				-0.3
2,417,555	+				+2.0
2,417,555	+				+0.6
2,417,555	+				+1.9
2,417,556	-				+0.7
2,417,562	+				-0.4
2,417,563	-				-0.1
2,417,563	-				+1.5
2,417,563	-				+1.3
2,417,563	-				+2.3
2,417,576	+				-1.8
2,417,576	+				+1.2
2,417,595	+				+0.7
2,417,596	-				-2.0
2,417,670	+		EFB2_02282	0.15	-0.0
2,417,676	+		EFB2_02282	0.16	+2.9
2,417,676	+		EFB2_02282	0.16	-1.8
2,417,677	-		EFB2_02282	0.16	-1.0
2,417,677	-		EFB2_02282	0.16	+2.3
2,417,681	+		EFB2_02282	0.17	-0.8
2,417,681	+		EFB2_02282	0.17	+0.7
2,417,681	+		EFB2_02282	0.17	+0.7
2,417,681	+		EFB2_02282	0.17	+0.1
2,417,682	-		EFB2_02282	0.17	+0.3
2,417,682	-		EFB2_02282	0.17	+1.3
2,417,833	+		EFB2_02282	0.37	-1.8
2,417,873	+		EFB2_02282	0.42	-2.1
2,417,873	+		EFB2_02282	0.42	+1.1
2,417,922	+		EFB2_02282	0.49	-1.9
2,417,922	+		EFB2_02282	0.49	+0.7
2,417,922	+		EFB2_02282	0.49	-0.6
2,417,923	-		EFB2_02282	0.49	+1.3
2,417,923	-		EFB2_02282	0.49	+0.8
2,417,923	-		EFB2_02282	0.49	-2.4
2,417,923	-		EFB2_02282	0.49	+1.2
2,417,923	-		EFB2_02282	0.49	-1.1
2,417,960	+		EFB2_02282	0.54	+0.9
2,417,960	+		EFB2_02282	0.54	-0.0
2,417,960	+		EFB2_02282	0.54	-0.4
2,417,960	+		EFB2_02282	0.54	-1.6
2,417,960	+		EFB2_02282	0.54	+0.4
2,417,961	-		EFB2_02282	0.54	+0.9
2,417,961	-		EFB2_02282	0.54	-2.4
2,417,961	-		EFB2_02282	0.54	-1.6
2,417,961	-		EFB2_02282	0.54	+0.3
2,418,071	+		EFB2_02282	0.69	-1.1
2,418,072	-		EFB2_02282	0.69	-1.1
2,418,072	-		EFB2_02282	0.69	+0.1
2,418,173	+		EFB2_02282	0.82	-0.0
2,418,173	+		EFB2_02282	0.82	-1.6
2,418,173	+		EFB2_02282	0.82	+0.4
2,418,173	+		EFB2_02282	0.82	-1.6
2,418,174	-		EFB2_02282	0.82	+0.3
2,418,245	-				-2.0
2,418,245	-				-1.1
2,418,313	+				-1.2
2,418,313	+				-2.3
2,418,313	+				-2.0
2,418,313	+				-0.1
2,418,314	-				-1.0
2,418,314	-				-0.6
2,418,314	-				+1.6
2,418,314	-				-1.4
2,418,316	+				+1.4
2,418,316	+				+1.3
2,418,316	+				+0.2
2,418,317	-				-0.4
2,418,336	+				+0.5
2,418,336	+				+0.4
2,418,336	+				-0.0
2,418,337	-				-0.0
2,418,337	-				-0.3
2,418,337	-				+1.3
2,418,337	-				+1.3
2,418,344	+				+1.3
2,418,349	+				-2.7
2,418,398	+				+1.2
2,418,431	+		EFB2_02283	0.10	+0.4
2,418,431	+		EFB2_02283	0.10	-0.5
2,418,431	+		EFB2_02283	0.10	+1.1
2,418,440	+		EFB2_02283	0.12	+0.5
2,418,440	+		EFB2_02283	0.12	-1.6
2,418,440	+		EFB2_02283	0.12	-0.4
2,418,480	-		EFB2_02283	0.21	-1.1
2,418,508	+		EFB2_02283	0.27	+0.3
2,418,508	+		EFB2_02283	0.27	+0.5
2,418,508	+		EFB2_02283	0.27	-0.6
2,418,508	+		EFB2_02283	0.27	-1.3
2,418,509	-		EFB2_02283	0.27	-0.3
2,418,509	-		EFB2_02283	0.27	-1.3
2,418,509	-		EFB2_02283	0.27	-0.0
2,418,645	-		EFB2_02283	0.56	-1.5
2,418,730	+		EFB2_02283	0.74	+0.6
2,418,730	+		EFB2_02283	0.74	-0.3
2,418,730	+		EFB2_02283	0.74	+0.0
2,418,730	+		EFB2_02283	0.74	+2.0
2,418,731	-		EFB2_02283	0.75	-0.9
2,418,734	+		EFB2_02283	0.75	+0.6
2,418,734	+		EFB2_02283	0.75	-1.2
2,418,735	-		EFB2_02283	0.75	-0.0
2,418,738	+		EFB2_02283	0.76	-0.5
2,418,738	+		EFB2_02283	0.76	+1.2
2,418,738	+		EFB2_02283	0.76	-1.4
2,418,738	+		EFB2_02283	0.76	-1.0
2,418,738	+		EFB2_02283	0.76	-0.7
2,418,738	+		EFB2_02283	0.76	-0.5
2,418,738	+		EFB2_02283	0.76	-2.4
2,418,738	+		EFB2_02283	0.76	+0.6
2,418,739	-		EFB2_02283	0.76	-1.7
2,418,739	-		EFB2_02283	0.76	-0.7
2,418,759	-		EFB2_02283	0.81	-0.0
2,418,759	-		EFB2_02283	0.81	-0.3
2,418,771	-		EFB2_02283	0.83	+1.5
2,418,771	-		EFB2_02283	0.83	-0.9
2,418,810	+				+0.5
2,418,811	-				-0.5
2,418,846	+				-2.1
2,418,846	+				-0.4
2,418,846	+				-0.3
2,418,846	+				-0.3
2,418,846	+				-0.9
2,418,846	+				-0.0
2,418,846	+				-0.2
2,418,846	+				-1.9
2,418,846	+				-1.8
2,418,846	+				-0.3
2,418,846	+				-0.1
2,418,846	+				+1.0
2,418,846	+				+0.1
2,418,846	+				+0.5
2,418,846	+				-0.5
2,418,846	+				-1.8
2,418,847	-				-0.3
2,418,847	-				+1.9
2,418,847	-				-0.1
2,418,847	-				+2.3
2,418,847	-				+0.3
2,418,847	-				-0.3
2,418,847	-				-0.9
2,418,847	-				+0.1
2,418,847	-				-0.1
2,418,847	-				-2.5
2,418,847	-				+2.1
2,418,847	-				-0.7
2,418,847	-				-1.3
2,418,847	-				+2.0
2,418,847	-				-0.9
2,418,847	-				+0.2
2,418,849	+				-2.2
2,418,849	+				+0.2
2,418,849	+				-0.0
2,418,849	+				+0.1
2,418,849	+				-0.8
2,418,849	+				+1.8
2,418,850	-				+1.9
2,418,850	-				+1.0
2,418,850	-				-0.3
2,418,874	+				-0.7
2,418,874	+				-1.3
2,418,874	+				-1.3
2,418,875	-				+1.3
2,418,875	-				-0.3
2,418,890	+				+0.5
2,418,890	+				-0.5
2,418,890	+				+1.2
2,418,890	+				+1.8
2,418,890	+				-1.3
2,418,900	+				+1.9
2,418,900	+				+1.5
2,418,900	+				+1.0
2,418,901	-				+1.9
2,418,901	-				+1.0
2,418,901	-				-0.5
2,418,906	-				+0.9
2,418,908	+				+1.3
2,418,908	+				-0.9
2,418,908	+				+2.2
2,418,908	+				-1.8
2,418,909	-				-0.2
2,418,930	+				+1.4
2,418,940	-				+1.1
2,418,991	-				+0.3
2,419,029	+				+0.3
2,419,029	+				-0.7
2,419,030	-				+0.1
2,419,036	+				-1.0
2,419,036	+				+1.1
2,419,054	-				-0.0
2,419,154	+				-2.4
2,419,183	+		EFB2_02284	0.12	-1.6
2,419,183	+		EFB2_02284	0.12	+2.1
2,419,211	+		EFB2_02284	0.16	+2.3
2,419,240	+		EFB2_02284	0.20	+2.2
2,419,240	+		EFB2_02284	0.20	-1.1
2,419,250	+		EFB2_02284	0.22	-2.9
2,419,251	-		EFB2_02284	0.22	-2.1
2,419,251	-		EFB2_02284	0.22	+0.6
2,419,251	-		EFB2_02284	0.22	-1.9
2,419,273	+		EFB2_02284	0.25	-0.4