Strain Fitness in Escherichia fergusonii Becca around EFB2_02248

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,383,992	+		EFB2_02247	0.33	-0.7
2,383,993	-		EFB2_02247	0.33	+1.8
2,383,993	-		EFB2_02247	0.33	-0.2
2,383,993	-		EFB2_02247	0.33	-1.8
2,384,001	+		EFB2_02247	0.33	+1.3
2,384,001	+		EFB2_02247	0.33	-1.1
2,384,001	+		EFB2_02247	0.33	+1.2
2,384,001	+		EFB2_02247	0.33	-2.5
2,384,007	+		EFB2_02247	0.34	-0.1
2,384,008	-		EFB2_02247	0.34	+2.3
2,384,054	+		EFB2_02247	0.37	-0.2
2,384,182	+		EFB2_02247	0.46	+3.0
2,384,244	+		EFB2_02247	0.50	-1.4
2,384,245	-		EFB2_02247	0.50	+0.5
2,384,248	-		EFB2_02247	0.50	-1.4
2,384,255	+		EFB2_02247	0.51	+0.0
2,384,256	-		EFB2_02247	0.51	-1.8
2,384,256	-		EFB2_02247	0.51	-1.0
2,384,259	+		EFB2_02247	0.51	-0.5
2,384,259	+		EFB2_02247	0.51	+0.2
2,384,260	-		EFB2_02247	0.51	-0.7
2,384,355	-		EFB2_02247	0.57	-0.4
2,384,457	+		EFB2_02247	0.64	+0.9
2,384,457	+		EFB2_02247	0.64	-1.8
2,384,457	+		EFB2_02247	0.64	+2.3
2,384,457	+		EFB2_02247	0.64	+1.2
2,384,457	+		EFB2_02247	0.64	-1.3
2,384,457	+		EFB2_02247	0.64	+0.5
2,384,457	+		EFB2_02247	0.64	+0.9
2,384,458	-		EFB2_02247	0.64	+1.0
2,384,458	-		EFB2_02247	0.64	-1.3
2,384,458	-		EFB2_02247	0.64	+0.7
2,384,458	-		EFB2_02247	0.64	+0.0
2,384,555	+		EFB2_02247	0.71	-2.2
2,384,555	+		EFB2_02247	0.71	+0.4
2,384,555	+		EFB2_02247	0.71	-3.0
2,384,556	-		EFB2_02247	0.71	-1.8
2,384,556	-		EFB2_02247	0.71	+1.4
2,384,558	+		EFB2_02247	0.71	+0.3
2,384,558	+		EFB2_02247	0.71	+0.9
2,384,558	+		EFB2_02247	0.71	-0.8
2,384,558	+		EFB2_02247	0.71	-0.1
2,384,558	+		EFB2_02247	0.71	-0.5
2,384,559	-		EFB2_02247	0.71	-1.0
2,384,559	-		EFB2_02247	0.71	+2.4
2,384,559	-		EFB2_02247	0.71	-1.1
2,384,559	-		EFB2_02247	0.71	+1.2
2,384,610	+		EFB2_02247	0.75	+1.1
2,384,646	-		EFB2_02247	0.77	-0.6
2,384,663	-		EFB2_02247	0.78	+0.3
2,384,787	+		EFB2_02247	0.87	-0.1
2,384,787	+		EFB2_02247	0.87	-2.1
2,384,788	-		EFB2_02247	0.87	+0.2
2,384,788	-		EFB2_02247	0.87	-1.3
2,384,788	-		EFB2_02247	0.87	-2.8
2,384,820	+		EFB2_02247	0.89	+1.1
2,384,875	+				-1.7
2,384,876	-				-0.5
2,384,887	+				-1.0
2,384,888	-				-0.4
2,384,888	-				+1.3
2,384,888	-				+1.7
2,384,888	-				+2.7
2,384,888	-				+1.3
2,385,016	+				+1.3
2,385,053	+				-1.4
2,385,189	-		EFB2_02248	0.15	-2.6
2,385,222	-		EFB2_02248	0.18	-0.1
2,385,236	-		EFB2_02248	0.19	-2.4
2,385,236	-		EFB2_02248	0.19	-1.7
2,385,236	-		EFB2_02248	0.19	+1.0
2,385,305	-		EFB2_02248	0.24	+1.3
2,385,371	+		EFB2_02248	0.29	-1.4
2,385,384	-		EFB2_02248	0.30	+0.0
2,385,384	-		EFB2_02248	0.30	+1.9
2,385,458	+		EFB2_02248	0.35	+2.1
2,385,459	-		EFB2_02248	0.35	+1.4
2,385,485	-		EFB2_02248	0.37	+0.0
2,385,485	-		EFB2_02248	0.37	-1.1
2,385,537	+		EFB2_02248	0.41	-2.6
2,385,537	+		EFB2_02248	0.41	+0.3
2,385,568	-		EFB2_02248	0.44	+1.1
2,385,568	-		EFB2_02248	0.44	+0.4
2,385,590	+		EFB2_02248	0.45	+1.7
2,385,725	+		EFB2_02248	0.55	+1.7
2,385,799	+		EFB2_02248	0.61	-2.7
2,385,799	+		EFB2_02248	0.61	-0.8
2,385,799	+		EFB2_02248	0.61	-0.5
2,385,800	-		EFB2_02248	0.61	-0.1
2,385,833	+		EFB2_02248	0.63	-1.8
2,385,841	+		EFB2_02248	0.64	+1.8
2,385,841	+		EFB2_02248	0.64	+1.4
2,385,841	+		EFB2_02248	0.64	-1.4
2,385,841	+		EFB2_02248	0.64	+1.6
2,385,841	+		EFB2_02248	0.64	+1.0
2,385,841	+		EFB2_02248	0.64	-1.5
2,385,841	+		EFB2_02248	0.64	+0.7
2,385,841	+		EFB2_02248	0.64	+0.7
2,385,842	-		EFB2_02248	0.64	+1.2
2,385,842	-		EFB2_02248	0.64	-1.8
2,385,842	-		EFB2_02248	0.64	-1.7
2,385,842	-		EFB2_02248	0.64	-1.1
2,385,842	-		EFB2_02248	0.64	+0.5
2,385,884	+		EFB2_02248	0.67	+0.9
2,385,884	+		EFB2_02248	0.67	-0.5
2,385,884	+		EFB2_02248	0.67	-1.0
2,385,884	+		EFB2_02248	0.67	-1.8
2,385,884	+		EFB2_02248	0.67	-0.3
2,385,884	+		EFB2_02248	0.67	-1.5
2,385,884	+		EFB2_02248	0.67	-1.4
2,385,884	+		EFB2_02248	0.67	+1.8
2,385,885	-		EFB2_02248	0.67	-1.5
2,385,885	-		EFB2_02248	0.67	-0.3
2,385,885	-		EFB2_02248	0.67	-0.8
2,385,885	-		EFB2_02248	0.67	+0.6
2,385,885	-		EFB2_02248	0.67	-1.1
2,385,885	-		EFB2_02248	0.67	-0.9
2,385,888	+		EFB2_02248	0.67	-0.2
2,385,888	+		EFB2_02248	0.67	-1.9
2,385,888	+		EFB2_02248	0.67	+0.3
2,385,888	+		EFB2_02248	0.67	-0.8
2,385,888	+		EFB2_02248	0.67	+0.7
2,385,888	+		EFB2_02248	0.67	-0.1
2,385,888	+		EFB2_02248	0.67	-0.3
2,385,888	+		EFB2_02248	0.67	+0.5
2,385,889	-		EFB2_02248	0.67	+0.7
2,385,889	-		EFB2_02248	0.67	+1.1
2,385,889	-		EFB2_02248	0.67	+1.3
2,385,889	-		EFB2_02248	0.67	+0.7
2,385,889	-		EFB2_02248	0.67	+0.7
2,385,889	-		EFB2_02248	0.67	+1.2
2,385,889	-		EFB2_02248	0.67	-1.5
2,385,889	-		EFB2_02248	0.67	-1.3
2,385,974	-		EFB2_02248	0.74	+0.5
2,385,974	-		EFB2_02248	0.74	+1.4
2,386,015	+		EFB2_02248	0.77	-1.1
2,386,015	+		EFB2_02248	0.77	-0.5
2,386,024	+		EFB2_02248	0.78	-1.7
2,386,024	+		EFB2_02248	0.78	-0.3
2,386,025	-		EFB2_02248	0.78	-1.1
2,386,039	+		EFB2_02248	0.79	-0.7
2,386,040	-		EFB2_02248	0.79	+2.3
2,386,145	+		EFB2_02248	0.87	-1.1
2,386,145	+		EFB2_02248	0.87	+1.3
2,386,146	-		EFB2_02248	0.87	+0.3
2,386,154	+		EFB2_02248	0.87	-0.0
2,386,154	+		EFB2_02248	0.87	+0.3
2,386,183	-		EFB2_02248	0.89	-3.3
2,386,183	-		EFB2_02248	0.89	-0.1
2,386,183	-		EFB2_02248	0.89	-0.7
2,386,183	-		EFB2_02248	0.89	+3.3
2,386,186	-		EFB2_02248	0.90	-1.8
2,386,186	-		EFB2_02248	0.90	-0.2
2,386,199	+				-1.3
2,386,256	+				+0.7
2,386,256	+				+2.2
2,386,257	-				-1.9
2,386,270	+				+1.7
2,386,271	-				-1.0
2,386,291	-				+0.7
2,386,324	-				+0.4
2,386,324	-				+1.3
2,386,324	-				-0.5
2,386,324	-				-1.6
2,386,418	+		EFB2_02249	0.10	-2.2
2,386,419	-		EFB2_02249	0.10	+2.8
2,386,419	-		EFB2_02249	0.10	-1.4
2,386,479	+		EFB2_02249	0.17	+0.8
2,386,498	+		EFB2_02249	0.19	+1.0
2,386,527	-		EFB2_02249	0.22	-1.1
2,386,560	-		EFB2_02249	0.25	+1.3
2,386,606	+		EFB2_02249	0.30	+0.4
2,386,614	+		EFB2_02249	0.31	-2.7
2,386,652	+		EFB2_02249	0.34	-2.8
2,386,653	-		EFB2_02249	0.35	+1.0
2,386,653	-		EFB2_02249	0.35	-1.1
2,386,754	+		EFB2_02249	0.45	-0.6
2,386,754	+		EFB2_02249	0.45	+4.5
2,386,754	+		EFB2_02249	0.45	-0.5
2,386,754	+		EFB2_02249	0.45	-0.5
2,386,754	+		EFB2_02249	0.45	-1.4
2,386,754	+		EFB2_02249	0.45	+3.9
2,386,754	+		EFB2_02249	0.45	+3.0
2,386,754	+		EFB2_02249	0.45	+0.4
2,386,754	+		EFB2_02249	0.45	+2.3
2,386,754	+		EFB2_02249	0.45	+2.3
2,386,754	+		EFB2_02249	0.45	-0.8
2,386,754	+		EFB2_02249	0.45	-1.9
2,386,754	+		EFB2_02249	0.45	-1.3
2,386,754	+		EFB2_02249	0.45	-2.3
2,386,754	+		EFB2_02249	0.45	+2.3
2,386,755	-		EFB2_02249	0.45	+0.9
2,386,755	-		EFB2_02249	0.45	-1.4
2,386,755	-		EFB2_02249	0.45	+1.1
2,386,755	-		EFB2_02249	0.45	-1.8
2,386,755	-		EFB2_02249	0.45	+1.7
2,386,755	-		EFB2_02249	0.45	-0.4
2,386,755	-		EFB2_02249	0.45	-1.5
2,386,755	-		EFB2_02249	0.45	+1.5
2,386,755	-		EFB2_02249	0.45	-1.1
2,386,755	-		EFB2_02249	0.45	-1.0
2,386,755	-		EFB2_02249	0.45	+1.0
2,386,755	-		EFB2_02249	0.45	+0.7
2,386,758	+		EFB2_02249	0.45	-1.5
2,386,796	+		EFB2_02249	0.49	-1.5
2,386,796	+		EFB2_02249	0.49	+0.4
2,386,796	+		EFB2_02249	0.49	+0.0
2,386,796	+		EFB2_02249	0.49	-0.3
2,386,797	-		EFB2_02249	0.49	+1.2
2,386,797	-		EFB2_02249	0.49	+1.2
2,386,797	-		EFB2_02249	0.49	+3.7
2,386,797	-		EFB2_02249	0.49	+3.1
2,386,797	-		EFB2_02249	0.49	+0.0
2,386,893	+		EFB2_02249	0.59	+0.0
2,386,893	+		EFB2_02249	0.59	-1.6
2,386,893	+		EFB2_02249	0.59	+1.3
2,386,894	-		EFB2_02249	0.59	+1.4
2,386,894	-		EFB2_02249	0.59	+4.5
2,386,894	-		EFB2_02249	0.59	-0.8
2,386,938	+		EFB2_02249	0.64	-1.1
2,386,938	+		EFB2_02249	0.64	+1.3
2,386,939	-		EFB2_02249	0.64	-1.5
2,386,939	-		EFB2_02249	0.64	+0.0
2,386,997	+		EFB2_02249	0.70	-0.1
2,386,997	+		EFB2_02249	0.70	-1.0
2,386,998	-		EFB2_02249	0.70	+0.4
2,387,024	+		EFB2_02249	0.73	+2.7
2,387,024	+		EFB2_02249	0.73	-0.3
2,387,025	-		EFB2_02249	0.73	+1.6
2,387,088	+		EFB2_02249	0.79	+2.9
2,387,089	-		EFB2_02249	0.80	+0.5
2,387,118	+		EFB2_02249	0.83	+0.5
2,387,119	-		EFB2_02249	0.83	+1.7
2,387,142	+		EFB2_02249	0.85	+3.1
2,387,143	-		EFB2_02249	0.85	-1.3
2,387,193	+				+1.6
2,387,198	+				-0.2
2,387,210	+				-1.0
2,387,210	+				-2.1
2,387,210	+				-1.0
2,387,210	+				+0.3
2,387,210	+				+0.6
2,387,210	+				-0.2
2,387,210	+				-2.4
2,387,210	+				+0.0
2,387,210	+				+0.3
2,387,211	-				+0.2
2,387,211	-				+2.3
2,387,211	-				+0.2
2,387,211	-				+1.1
2,387,215	+				-1.0
2,387,215	+				+1.9
2,387,215	+				+0.7
2,387,216	-				+2.5
2,387,216	-				+0.0
2,387,216	-				+0.6
2,387,216	-				-2.2
2,387,253	-				+1.7
2,387,284	+				+1.3
2,387,284	+				-2.6
2,387,284	+				+0.4
2,387,284	+				+0.6
2,387,287	+				+1.9