Strain Fitness in Escherichia fergusonii Becca around EFB2_02202

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,336,018	-		EFB2_02201	0.30	+0.5
2,336,018	-		EFB2_02201	0.30	+0.5
2,336,018	-		EFB2_02201	0.30	+0.7
2,336,018	-		EFB2_02201	0.30	-0.8
2,336,021	-		EFB2_02201	0.30	+0.3
2,336,060	-		EFB2_02201	0.34	-0.3
2,336,062	+		EFB2_02201	0.34	-0.1
2,336,063	-		EFB2_02201	0.34	-1.0
2,336,063	-		EFB2_02201	0.34	-1.5
2,336,063	-		EFB2_02201	0.34	-0.4
2,336,063	-		EFB2_02201	0.34	+1.3
2,336,063	-		EFB2_02201	0.34	-1.9
2,336,084	+		EFB2_02201	0.36	-0.3
2,336,121	-		EFB2_02201	0.40	-1.7
2,336,121	-		EFB2_02201	0.40	+0.9
2,336,121	-		EFB2_02201	0.40	+0.7
2,336,126	-		EFB2_02201	0.40	-1.8
2,336,126	-		EFB2_02201	0.40	-0.5
2,336,126	-		EFB2_02201	0.40	-0.6
2,336,126	-		EFB2_02201	0.40	-0.4
2,336,132	-		EFB2_02201	0.41	+1.1
2,336,132	-		EFB2_02201	0.41	+0.0
2,336,132	-		EFB2_02201	0.41	-0.8
2,336,214	+		EFB2_02201	0.49	-1.9
2,336,214	+		EFB2_02201	0.49	+2.3
2,336,215	-		EFB2_02201	0.49	-0.2
2,336,215	-		EFB2_02201	0.49	+0.5
2,336,215	-		EFB2_02201	0.49	+0.2
2,336,240	-		EFB2_02201	0.51	-1.3
2,336,240	-		EFB2_02201	0.51	-1.5
2,336,240	-		EFB2_02201	0.51	-1.5
2,336,240	-		EFB2_02201	0.51	-1.2
2,336,278	+		EFB2_02201	0.55	+2.1
2,336,278	+		EFB2_02201	0.55	-1.8
2,336,279	-		EFB2_02201	0.55	+0.5
2,336,279	-		EFB2_02201	0.55	-0.3
2,336,279	-		EFB2_02201	0.55	+1.0
2,336,279	-		EFB2_02201	0.55	-1.4
2,336,279	-		EFB2_02201	0.55	+0.3
2,336,279	-		EFB2_02201	0.55	+0.7
2,336,279	-		EFB2_02201	0.55	+0.5
2,336,280	+		EFB2_02201	0.55	+0.2
2,336,280	+		EFB2_02201	0.55	+1.1
2,336,280	+		EFB2_02201	0.55	+0.8
2,336,280	+		EFB2_02201	0.55	+0.3
2,336,280	+		EFB2_02201	0.55	-1.6
2,336,281	-		EFB2_02201	0.55	-0.8
2,336,281	-		EFB2_02201	0.55	-1.6
2,336,281	-		EFB2_02201	0.55	+1.4
2,336,281	-		EFB2_02201	0.55	-2.1
2,336,281	-		EFB2_02201	0.55	-0.5
2,336,281	-		EFB2_02201	0.55	+1.2
2,336,281	-		EFB2_02201	0.55	-0.4
2,336,281	-		EFB2_02201	0.55	+0.0
2,336,281	-		EFB2_02201	0.55	+0.0
2,336,281	-		EFB2_02201	0.55	+0.1
2,336,281	-		EFB2_02201	0.55	-0.7
2,336,310	-		EFB2_02201	0.58	-1.1
2,336,310	-		EFB2_02201	0.58	-0.8
2,336,310	-		EFB2_02201	0.58	+1.4
2,336,310	-		EFB2_02201	0.58	+1.4
2,336,310	-		EFB2_02201	0.58	+0.7
2,336,310	-		EFB2_02201	0.58	+0.7
2,336,310	-		EFB2_02201	0.58	-1.0
2,336,310	-		EFB2_02201	0.58	-0.7
2,336,373	+		EFB2_02201	0.64	-2.8
2,336,373	+		EFB2_02201	0.64	-0.7
2,336,373	+		EFB2_02201	0.64	-2.1
2,336,374	-		EFB2_02201	0.65	+0.8
2,336,374	-		EFB2_02201	0.65	+1.4
2,336,374	-		EFB2_02201	0.65	-1.2
2,336,563	+		EFB2_02201	0.83	-0.8
2,336,564	-		EFB2_02201	0.83	-0.6
2,336,567	-		EFB2_02201	0.83	-1.8
2,336,567	-		EFB2_02201	0.83	+1.5
2,336,579	+		EFB2_02201	0.85	-0.5
2,336,579	+		EFB2_02201	0.85	+1.3
2,336,579	+		EFB2_02201	0.85	+1.5
2,336,579	+		EFB2_02201	0.85	+0.3
2,336,579	+		EFB2_02201	0.85	-0.5
2,336,579	+		EFB2_02201	0.85	+0.0
2,336,579	+		EFB2_02201	0.85	-2.1
2,336,579	+		EFB2_02201	0.85	+1.3
2,336,579	+		EFB2_02201	0.85	-0.8
2,336,579	+		EFB2_02201	0.85	+0.5
2,336,579	+		EFB2_02201	0.85	+0.3
2,336,580	-		EFB2_02201	0.85	+1.9
2,336,580	-		EFB2_02201	0.85	+1.5
2,336,580	-		EFB2_02201	0.85	+1.9
2,336,580	-		EFB2_02201	0.85	+0.6
2,336,580	-		EFB2_02201	0.85	-0.8
2,336,580	-		EFB2_02201	0.85	+2.1
2,336,580	-		EFB2_02201	0.85	+0.5
2,336,580	-		EFB2_02201	0.85	+1.2
2,336,580	-		EFB2_02201	0.85	+3.6
2,336,580	-		EFB2_02201	0.85	-1.0
2,336,580	-		EFB2_02201	0.85	+1.6
2,336,580	-		EFB2_02201	0.85	-1.4
2,336,580	-		EFB2_02201	0.85	-0.5
2,336,580	-		EFB2_02201	0.85	+1.9
2,336,580	-		EFB2_02201	0.85	-0.5
2,336,580	-		EFB2_02201	0.85	+1.3
2,336,580	-		EFB2_02201	0.85	+2.5
2,336,580	-		EFB2_02201	0.85	-1.8
2,336,580	-		EFB2_02201	0.85	+0.6
2,336,580	-		EFB2_02201	0.85	-1.7
2,336,581	+		EFB2_02201	0.85	+0.7
2,336,581	+		EFB2_02201	0.85	+1.8
2,336,581	+		EFB2_02201	0.85	-0.3
2,336,581	+		EFB2_02201	0.85	-1.3
2,336,581	+		EFB2_02201	0.85	+1.8
2,336,581	+		EFB2_02201	0.85	+1.0
2,336,581	+		EFB2_02201	0.85	+0.6
2,336,582	-		EFB2_02201	0.85	+2.9
2,336,582	-		EFB2_02201	0.85	-2.0
2,336,582	-		EFB2_02201	0.85	+0.3
2,336,582	-		EFB2_02201	0.85	+1.9
2,336,582	-		EFB2_02201	0.85	+0.0
2,336,582	-		EFB2_02201	0.85	+0.4
2,336,582	-		EFB2_02201	0.85	+1.0
2,336,582	-		EFB2_02201	0.85	-0.3
2,336,582	-		EFB2_02201	0.85	+2.0
2,336,582	-		EFB2_02201	0.85	+1.4
2,336,582	-		EFB2_02201	0.85	-0.3
2,336,582	-		EFB2_02201	0.85	-0.8
2,336,582	-		EFB2_02201	0.85	-1.5
2,336,582	-		EFB2_02201	0.85	-2.4
2,336,582	-		EFB2_02201	0.85	-2.1
2,336,582	-		EFB2_02201	0.85	-0.7
2,336,582	-		EFB2_02201	0.85	+0.6
2,336,582	-		EFB2_02201	0.85	+0.0
2,336,582	-		EFB2_02201	0.85	+0.3
2,336,582	-		EFB2_02201	0.85	+1.1
2,336,582	-		EFB2_02201	0.85	-0.4
2,336,582	-		EFB2_02201	0.85	+2.9
2,336,619	+		EFB2_02201	0.88	-0.8
2,336,619	+		EFB2_02201	0.88	+0.3
2,336,620	-		EFB2_02201	0.88	+0.7
2,336,620	-		EFB2_02201	0.88	-0.2
2,336,620	-		EFB2_02201	0.88	-0.2
2,336,620	-		EFB2_02201	0.88	+1.6
2,336,620	-		EFB2_02201	0.88	-1.6
2,336,620	-		EFB2_02201	0.88	-3.1
2,336,620	-		EFB2_02201	0.88	+0.7
2,336,620	-		EFB2_02201	0.88	-0.8
2,336,632	+		EFB2_02201	0.90	+0.7
2,336,632	+		EFB2_02201	0.90	-0.1
2,336,754	-				+1.0
2,336,763	-				-0.6
2,336,773	+				-0.3
2,336,774	-				-0.5
2,336,774	-				+0.5
2,336,777	+				+1.7
2,336,777	+				+2.5
2,336,778	-				+1.8
2,336,795	+				-2.4
2,336,795	+				+0.2
2,336,795	+				-1.5
2,336,795	+				+0.6
2,336,795	+				-1.6
2,336,796	-				+0.0
2,336,828	-				-2.0
2,336,828	-				+0.0
2,336,830	+				+1.0
2,336,830	+				+0.3
2,336,831	-				-1.5
2,336,900	+				-0.6
2,336,900	+				+1.5
2,336,904	+				-0.7
2,336,904	+				+1.4
2,336,904	+				+0.7
2,336,904	+				+0.5
2,336,904	+				-2.3
2,336,904	+				-2.8
2,336,904	+				-1.7
2,336,905	-				-1.7
2,336,905	-				-0.5
2,336,905	-				+0.3
2,336,917	+				-0.1
2,336,918	-				+2.3
2,336,997	+		EFB2_02202	0.30	-2.8
2,336,997	+		EFB2_02202	0.30	-0.3
2,336,998	-		EFB2_02202	0.31	-1.5
2,336,998	-		EFB2_02202	0.31	-0.7
2,337,038	-		EFB2_02202	0.46	+1.3
2,337,038	-		EFB2_02202	0.46	-1.6
2,337,107	+		EFB2_02202	0.73	+0.6
2,337,172	+				-0.7
2,337,191	+				-0.7
2,337,191	+				-1.6
2,337,191	+				-0.2
2,337,192	-				-0.7
2,337,192	-				+1.3
2,337,204	+				+2.3
2,337,204	+				-0.7
2,337,204	+				+1.6
2,337,204	+				-1.0
2,337,204	+				+0.7
2,337,204	+				+1.1
2,337,204	+				+0.5
2,337,204	+				-2.6
2,337,204	+				+0.0
2,337,204	+				-2.3
2,337,204	+				-0.1
2,337,204	+				-1.4
2,337,204	+				-0.3
2,337,204	+				-1.6
2,337,204	+				-3.0
2,337,204	+				-0.1
2,337,204	+				+0.1
2,337,204	+				-3.8
2,337,204	+				+2.5
2,337,204	+				-0.3
2,337,204	+				-0.2
2,337,204	+				+0.1
2,337,204	+				-1.8
2,337,204	+				+1.3
2,337,204	+				-0.1
2,337,204	+				-2.9
2,337,204	+				+0.2
2,337,204	+				+0.1
2,337,204	+				+0.5
2,337,204	+				-3.3
2,337,204	+				+0.5
2,337,205	-				-1.3
2,337,205	-				+0.7
2,337,205	-				+0.7
2,337,205	-				+0.8
2,337,205	-				-1.9
2,337,205	-				-0.6
2,337,205	-				-1.0
2,337,205	-				+0.7
2,337,205	-				-1.2
2,337,205	-				-1.1
2,337,205	-				+0.3
2,337,205	-				+2.3
2,337,205	-				-1.6
2,337,205	-				-0.3
2,337,205	-				-0.5
2,337,205	-				-1.7
2,337,205	-				+2.5
2,337,205	-				+1.8
2,337,205	-				-0.5
2,337,205	-				+1.1
2,337,205	-				+5.5
2,337,205	-				+1.0
2,337,208	+				+0.5
2,337,208	+				-2.1
2,337,260	+		EFB2_02203	0.18	+1.0
2,337,260	+		EFB2_02203	0.18	-0.4
2,337,260	+		EFB2_02203	0.18	-1.4
2,337,261	-		EFB2_02203	0.19	+0.3
2,337,341	+		EFB2_02203	0.42	+1.1
2,337,341	+		EFB2_02203	0.42	-0.3
2,337,341	+		EFB2_02203	0.42	+0.7
2,337,341	+		EFB2_02203	0.42	+1.5
2,337,342	-		EFB2_02203	0.42	-0.7
2,337,342	-		EFB2_02203	0.42	+0.4
2,337,342	-		EFB2_02203	0.42	-2.9
2,337,440	-		EFB2_02203	0.70	-0.3
2,337,456	+		EFB2_02203	0.75	-0.5
2,337,537	+				-0.3
2,337,538	-				+0.4
2,337,546	+				+1.8
2,337,546	+				-0.4
2,337,547	-				+0.5
2,337,547	-				-2.6
2,337,584	+				+3.0
2,337,584	+				-1.5
2,337,584	+				+0.1
2,337,584	+				+0.5
2,337,584	+				+0.0
2,337,584	+				+0.5
2,337,585	-				+1.5
2,337,585	-				+0.2
2,337,585	-				-0.5
2,337,586	+				+1.3
2,337,586	+				+1.3
2,337,586	+				+1.1
2,337,587	-				+1.2
2,337,587	-				-0.7
2,337,587	-				+0.3
2,337,587	-				+1.6
2,337,587	-				-0.7
2,337,587	-				+1.7
2,337,587	-				+1.3
2,337,587	-				-0.3
2,337,587	-				-1.4
2,337,587	-				-1.0
2,337,587	-				-2.9
2,337,587	-				-2.3
2,337,587	-				+0.6
2,337,587	-				+1.4
2,337,587	-				+2.2
2,337,587	-				+0.5
2,337,596	+				-0.7
2,337,649	+				+2.4
2,337,650	-				+1.7
2,337,650	-				-1.8
2,337,650	-				-0.3
2,337,658	+				+0.6
2,337,659	-				-0.2
2,337,659	-				+0.0
2,337,659	-				+0.9
2,337,659	-				-1.3
2,337,696	+				+1.3
2,337,707	-				+0.5
2,337,707	-				+2.3
2,337,707	-				-3.6
2,337,711	+				+1.0
2,337,711	+				+0.8
2,337,711	+				-1.5
2,337,746	+		EFB2_02204	0.13	-1.1
2,337,746	+		EFB2_02204	0.13	+1.5
2,337,747	-		EFB2_02204	0.13	-0.1
2,337,829	+		EFB2_02204	0.20	-1.6
2,337,830	-		EFB2_02204	0.20	-2.4
2,337,891	+		EFB2_02204	0.25	-0.3
2,337,891	+		EFB2_02204	0.25	+1.7
2,337,892	-		EFB2_02204	0.25	-1.0
2,337,945	+		EFB2_02204	0.29	-1.1
2,337,945	+		EFB2_02204	0.29	+1.6
2,337,945	+		EFB2_02204	0.29	-1.6
2,337,945	+		EFB2_02204	0.29	-1.0
2,337,946	-		EFB2_02204	0.29	-0.3
2,337,946	-		EFB2_02204	0.29	+0.5
2,337,946	-		EFB2_02204	0.29	+0.1
2,337,946	-		EFB2_02204	0.29	-0.2
2,337,971	-		EFB2_02204	0.32	+0.5
2,337,971	-		EFB2_02204	0.32	-2.5
2,338,010	-		EFB2_02204	0.35	+0.3
2,338,010	-		EFB2_02204	0.35	+1.4
2,338,010	-		EFB2_02204	0.35	+1.0
2,338,010	-		EFB2_02204	0.35	-0.6
2,338,010	-		EFB2_02204	0.35	+0.9
2,338,010	-		EFB2_02204	0.35	+1.0
2,338,050	+		EFB2_02204	0.38	-1.7
2,338,050	+		EFB2_02204	0.38	-0.7
2,338,052	+		EFB2_02204	0.38	-1.1
2,338,090	-		EFB2_02204	0.42	-1.3
2,338,097	+		EFB2_02204	0.42	+2.3
2,338,097	+		EFB2_02204	0.42	+0.0
2,338,097	+		EFB2_02204	0.42	+0.9
2,338,097	+		EFB2_02204	0.42	-2.2
2,338,097	+		EFB2_02204	0.42	+0.2
2,338,097	+		EFB2_02204	0.42	+0.3
2,338,097	+		EFB2_02204	0.42	-0.8
2,338,097	+		EFB2_02204	0.42	+1.2
2,338,098	-		EFB2_02204	0.42	+5.1
2,338,098	-		EFB2_02204	0.42	+1.5
2,338,098	-		EFB2_02204	0.42	+0.5
2,338,098	-		EFB2_02204	0.42	-1.5
2,338,098	-		EFB2_02204	0.42	+2.2
2,338,098	-		EFB2_02204	0.42	-0.8
2,338,100	+		EFB2_02204	0.42	-1.0
2,338,100	+		EFB2_02204	0.42	+2.1
2,338,101	-		EFB2_02204	0.43	+2.3
2,338,101	-		EFB2_02204	0.43	-0.7
2,338,101	-		EFB2_02204	0.43	+0.7
2,338,101	-		EFB2_02204	0.43	-1.6
2,338,101	-		EFB2_02204	0.43	-2.3
2,338,132	+		EFB2_02204	0.45	-1.8
2,338,133	-		EFB2_02204	0.45	+1.4
2,338,133	-		EFB2_02204	0.45	-0.3
2,338,133	-		EFB2_02204	0.45	+1.4
2,338,170	+		EFB2_02204	0.48	+0.3
2,338,170	+		EFB2_02204	0.48	-2.4
2,338,170	+		EFB2_02204	0.48	-0.3
2,338,170	+		EFB2_02204	0.48	+0.0
2,338,170	+		EFB2_02204	0.48	+0.5
2,338,170	+		EFB2_02204	0.48	-0.7
2,338,170	+		EFB2_02204	0.48	-1.7
2,338,170	+		EFB2_02204	0.48	+1.8
2,338,171	-		EFB2_02204	0.48	+0.1
2,338,171	-		EFB2_02204	0.48	+1.9
2,338,174	+		EFB2_02204	0.49	+1.5
2,338,174	+		EFB2_02204	0.49	-1.5
2,338,174	+		EFB2_02204	0.49	-1.0
2,338,174	+		EFB2_02204	0.49	+1.8
2,338,174	+		EFB2_02204	0.49	-0.7
2,338,174	+		EFB2_02204	0.49	+0.9
2,338,174	+		EFB2_02204	0.49	+2.2
2,338,174	+		EFB2_02204	0.49	+1.7
2,338,174	+		EFB2_02204	0.49	+0.4
2,338,174	+		EFB2_02204	0.49	+3.0