Strain Fitness in Escherichia fergusonii Becca around EFB2_02031

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,185,086	-				+1.7
2,185,086	-				+0.4
2,185,093	+				+0.9
2,185,128	-				+0.4
2,185,144	-				+2.1
2,185,157	+				-1.2
2,185,157	+				+1.4
2,185,158	-				-0.4
2,185,159	+				-1.3
2,185,160	-				-0.6
2,185,166	+				-2.9
2,185,166	+				-1.2
2,185,166	+				+1.5
2,185,177	+				+0.8
2,185,195	+				-1.0
2,185,195	+				+0.6
2,185,195	+				-1.2
2,185,196	-				+2.4
2,185,203	-				-1.8
2,185,228	+				-0.4
2,185,228	+				-1.8
2,185,231	+				+1.4
2,185,231	+				-0.4
2,185,231	+				-0.4
2,185,231	+				-0.8
2,185,231	+				-0.8
2,185,232	-				+1.5
2,185,232	-				+0.2
2,185,232	-				-2.9
2,185,232	-				+1.2
2,185,310	+		EFB2_02030	0.11	+0.5
2,185,310	+		EFB2_02030	0.11	-0.4
2,185,310	+		EFB2_02030	0.11	-1.1
2,185,310	+		EFB2_02030	0.11	-0.5
2,185,310	+		EFB2_02030	0.11	-0.8
2,185,310	+		EFB2_02030	0.11	+1.7
2,185,310	+		EFB2_02030	0.11	-1.4
2,185,311	-		EFB2_02030	0.11	-0.9
2,185,311	-		EFB2_02030	0.11	+0.2
2,185,320	+		EFB2_02030	0.12	-3.5
2,185,320	+		EFB2_02030	0.12	-0.4
2,185,320	+		EFB2_02030	0.12	-1.4
2,185,320	+		EFB2_02030	0.12	+0.3
2,185,321	-		EFB2_02030	0.12	-2.7
2,185,352	+		EFB2_02030	0.17	+3.2
2,185,352	+		EFB2_02030	0.17	+0.8
2,185,352	+		EFB2_02030	0.17	+0.7
2,185,352	+		EFB2_02030	0.17	+2.4
2,185,353	-		EFB2_02030	0.17	+2.2
2,185,353	-		EFB2_02030	0.17	+0.8
2,185,353	-		EFB2_02030	0.17	+1.4
2,185,355	+		EFB2_02030	0.17	-1.2
2,185,355	+		EFB2_02030	0.17	+0.1
2,185,355	+		EFB2_02030	0.17	+1.2
2,185,356	-		EFB2_02030	0.17	+0.8
2,185,356	-		EFB2_02030	0.17	+0.6
2,185,362	+		EFB2_02030	0.18	+1.6
2,185,362	+		EFB2_02030	0.18	-1.0
2,185,362	+		EFB2_02030	0.18	-1.1
2,185,362	+		EFB2_02030	0.18	-0.1
2,185,362	+		EFB2_02030	0.18	-2.8
2,185,362	+		EFB2_02030	0.18	+0.1
2,185,396	+		EFB2_02030	0.23	+0.2
2,185,396	+		EFB2_02030	0.23	+0.6
2,185,396	+		EFB2_02030	0.23	-1.4
2,185,396	+		EFB2_02030	0.23	-0.4
2,185,396	+		EFB2_02030	0.23	+1.1
2,185,397	-		EFB2_02030	0.23	+3.2
2,185,409	+		EFB2_02030	0.24	-2.0
2,185,409	+		EFB2_02030	0.24	-1.8
2,185,409	+		EFB2_02030	0.24	-0.1
2,185,409	+		EFB2_02030	0.24	+1.2
2,185,409	+		EFB2_02030	0.24	-0.1
2,185,410	-		EFB2_02030	0.25	+1.9
2,185,410	-		EFB2_02030	0.25	+0.9
2,185,410	-		EFB2_02030	0.25	-1.5
2,185,410	-		EFB2_02030	0.25	-1.2
2,185,410	-		EFB2_02030	0.25	+0.6
2,185,411	+		EFB2_02030	0.25	+0.4
2,185,411	+		EFB2_02030	0.25	-1.3
2,185,418	+		EFB2_02030	0.26	-1.2
2,185,418	+		EFB2_02030	0.26	+0.6
2,185,418	+		EFB2_02030	0.26	-0.6
2,185,418	+		EFB2_02030	0.26	-1.5
2,185,419	-		EFB2_02030	0.26	-0.9
2,185,419	-		EFB2_02030	0.26	+0.3
2,185,419	-		EFB2_02030	0.26	+0.4
2,185,419	-		EFB2_02030	0.26	+0.7
2,185,435	+		EFB2_02030	0.28	-0.9
2,185,436	-		EFB2_02030	0.28	+2.0
2,185,436	-		EFB2_02030	0.28	-1.5
2,185,439	+		EFB2_02030	0.29	-0.4
2,185,439	+		EFB2_02030	0.29	-1.2
2,185,439	+		EFB2_02030	0.29	-0.9
2,185,439	+		EFB2_02030	0.29	+1.3
2,185,439	+		EFB2_02030	0.29	-1.5
2,185,439	+		EFB2_02030	0.29	+0.5
2,185,439	+		EFB2_02030	0.29	+0.2
2,185,440	-		EFB2_02030	0.29	+0.1
2,185,440	-		EFB2_02030	0.29	-0.2
2,185,440	-		EFB2_02030	0.29	-1.8
2,185,440	-		EFB2_02030	0.29	-1.8
2,185,442	+		EFB2_02030	0.29	-1.9
2,185,442	+		EFB2_02030	0.29	+1.3
2,185,443	-		EFB2_02030	0.29	+0.1
2,185,443	-		EFB2_02030	0.29	+1.4
2,185,495	+		EFB2_02030	0.36	+1.3
2,185,496	-		EFB2_02030	0.37	-0.9
2,185,509	+		EFB2_02030	0.38	-0.9
2,185,509	+		EFB2_02030	0.38	+0.2
2,185,509	+		EFB2_02030	0.38	+0.7
2,185,509	+		EFB2_02030	0.38	-2.4
2,185,509	+		EFB2_02030	0.38	-0.9
2,185,509	+		EFB2_02030	0.38	-0.5
2,185,510	-		EFB2_02030	0.38	+2.2
2,185,527	+		EFB2_02030	0.41	-0.1
2,185,527	+		EFB2_02030	0.41	+1.7
2,185,527	+		EFB2_02030	0.41	+2.2
2,185,528	-		EFB2_02030	0.41	-2.5
2,185,575	+		EFB2_02030	0.47	-0.9
2,185,595	+		EFB2_02030	0.50	+0.5
2,185,595	+		EFB2_02030	0.50	+1.1
2,185,596	-		EFB2_02030	0.50	+1.0
2,185,596	-		EFB2_02030	0.50	+0.5
2,185,596	-		EFB2_02030	0.50	+1.2
2,185,599	+		EFB2_02030	0.51	+1.1
2,185,599	+		EFB2_02030	0.51	-0.9
2,185,599	+		EFB2_02030	0.51	-1.5
2,185,599	+		EFB2_02030	0.51	+0.3
2,185,599	+		EFB2_02030	0.51	-2.0
2,185,600	-		EFB2_02030	0.51	-1.2
2,185,600	-		EFB2_02030	0.51	-0.3
2,185,600	-		EFB2_02030	0.51	-0.0
2,185,600	-		EFB2_02030	0.51	+0.8
2,185,669	+		EFB2_02030	0.60	-0.1
2,185,670	-		EFB2_02030	0.61	-2.5
2,185,670	-		EFB2_02030	0.61	-1.3
2,185,670	-		EFB2_02030	0.61	+1.1
2,185,698	+		EFB2_02030	0.64	-0.9
2,185,698	+		EFB2_02030	0.64	+0.1
2,185,698	+		EFB2_02030	0.64	+0.6
2,185,699	-		EFB2_02030	0.65	+0.7
2,185,734	+		EFB2_02030	0.69	-1.2
2,185,734	+		EFB2_02030	0.69	-0.1
2,185,734	+		EFB2_02030	0.69	-1.6
2,185,735	-		EFB2_02030	0.70	-1.6
2,185,746	+		EFB2_02030	0.71	+0.5
2,185,746	+		EFB2_02030	0.71	+1.9
2,185,746	+		EFB2_02030	0.71	+1.1
2,185,746	+		EFB2_02030	0.71	+0.5
2,185,746	+		EFB2_02030	0.71	+0.2
2,185,746	+		EFB2_02030	0.71	-1.3
2,185,746	+		EFB2_02030	0.71	+1.1
2,185,746	+		EFB2_02030	0.71	-2.2
2,185,747	-		EFB2_02030	0.71	-2.4
2,185,747	-		EFB2_02030	0.71	-2.4
2,185,813	+		EFB2_02030	0.80	-0.7
2,185,813	+		EFB2_02030	0.80	+0.8
2,185,813	+		EFB2_02030	0.80	-2.7
2,185,813	+		EFB2_02030	0.80	-0.7
2,185,814	-		EFB2_02030	0.80	+1.6
2,185,814	-		EFB2_02030	0.80	+0.5
2,185,831	-		EFB2_02030	0.83	+1.4
2,185,831	-		EFB2_02030	0.83	-0.1
2,185,858	+		EFB2_02030	0.87	-0.2
2,185,859	-		EFB2_02030	0.87	+0.4
2,185,859	-		EFB2_02030	0.87	+0.3
2,185,859	-		EFB2_02030	0.87	-1.2
2,185,909	+				+0.3
2,185,909	+				+0.1
2,185,909	+				-0.7
2,185,909	+				+0.4
2,185,910	-				+1.6
2,185,928	+				+1.2
2,185,948	-				+0.3
2,185,948	-				+1.1
2,185,948	-				-0.4
2,186,018	+				+2.2
2,186,018	+				+1.5
2,186,019	-				+1.2
2,186,019	-				+0.5
2,186,019	-				-0.2
2,186,019	-				+1.7
2,186,019	-				+0.1
2,186,019	-				-0.8
2,186,020	+				-1.2
2,186,024	-				-1.1
2,186,024	-				-1.4
2,186,043	-				-0.5
2,186,067	+		EFB2_02031	0.20	+2.1
2,186,118	+		EFB2_02031	0.43	-0.9
2,186,119	-		EFB2_02031	0.43	-0.8
2,186,214	-		EFB2_02031	0.85	+0.4
2,186,214	-		EFB2_02031	0.85	+3.6
2,186,240	+				+0.2
2,186,240	+				-0.9
2,186,240	+				+0.3
2,186,240	+				-0.4
2,186,241	-				-2.2
2,186,249	-				+1.3
2,186,249	-				-0.9
2,186,249	-				-2.5
2,186,249	-				+0.6
2,186,294	-				-1.6
2,186,306	+				+1.5
2,186,306	+				-0.0
2,186,306	+				+0.3
2,186,306	+				+4.2
2,186,306	+				-0.8
2,186,306	+				-0.9
2,186,307	-				-2.8
2,186,307	-				+1.7
2,186,307	-				+1.4
2,186,307	-				+1.2
2,186,307	-				-1.9
2,186,307	-				+1.6
2,186,308	+				-1.1
2,186,308	+				-1.6
2,186,308	+				+4.1
2,186,308	+				-2.5
2,186,308	+				-1.1
2,186,308	+				+1.2
2,186,308	+				+1.6
2,186,308	+				-1.2
2,186,308	+				+2.4
2,186,308	+				+1.0
2,186,309	-				-0.3
2,186,309	-				-0.4
2,186,309	-				-0.1
2,186,309	-				+0.6
2,186,309	-				-0.1
2,186,309	-				+0.6
2,186,309	-				+1.5
2,186,309	-				+3.0
2,186,309	-				+0.4
2,186,309	-				-0.9
2,186,313	+				+0.2
2,186,313	+				-0.4
2,186,313	+				-1.2
2,186,313	+				-3.0
2,186,313	+				+0.9
2,186,314	-				-1.4
2,186,314	-				+0.4
2,186,314	-				-1.8
2,186,314	-				+0.1
2,186,314	-				-0.9
2,186,330	-				-2.8
2,186,364	+				-1.1
2,186,364	+				-0.1
2,186,364	+				-0.4
2,186,364	+				-0.4
2,186,364	+				+1.2
2,186,364	+				+1.4
2,186,364	+				-0.9
2,186,364	+				+0.7
2,186,364	+				+0.4
2,186,364	+				-0.6
2,186,364	+				+1.7
2,186,364	+				+1.0
2,186,365	-				-0.3
2,186,365	-				-1.4
2,186,365	-				-0.0
2,186,365	-				+0.4
2,186,365	-				+0.9
2,186,365	-				+0.3
2,186,365	-				-0.4
2,186,365	-				+1.6
2,186,365	-				-1.5
2,186,365	-				+0.9
2,186,365	-				-1.8
2,186,365	-				+1.0
2,186,365	-				-0.5
2,186,365	-				-1.4
2,186,365	-				+1.1
2,186,365	-				-1.1
2,186,368	-				+2.4
2,186,374	+				-0.1
2,186,374	+				-1.6
2,186,374	+				-0.4
2,186,374	+				+1.1
2,186,375	-				+0.2
2,186,375	-				+0.6
2,186,375	-				-3.4
2,186,375	-				-1.1
2,186,382	+				-0.8
2,186,382	+				-1.5
2,186,382	+				+0.6
2,186,382	+				+1.2
2,186,382	+				+2.0
2,186,382	+				-1.4
2,186,382	+				-0.5
2,186,382	+				-1.1
2,186,383	-				+2.2
2,186,383	-				+1.2
2,186,383	-				-2.3
2,186,383	-				-1.6
2,186,383	-				-1.8
2,186,383	-				+2.0
2,186,383	-				+1.3
2,186,383	-				+1.6
2,186,384	+				-0.8
2,186,384	+				-0.2
2,186,384	+				+0.7
2,186,384	+				-1.5
2,186,384	+				+1.0
2,186,384	+				+0.4
2,186,384	+				+1.0
2,186,385	-				+1.3
2,186,385	-				-3.0
2,186,385	-				+0.2
2,186,385	-				+4.8
2,186,385	-				+0.1
2,186,385	-				+0.7
2,186,394	+				-0.6
2,186,398	+				+0.1
2,186,398	+				-0.6
2,186,404	+				+0.6
2,186,426	+				-1.4
2,186,427	-				-1.0
2,186,442	+				+0.1
2,186,442	+				+0.7
2,186,443	-				+0.7
2,186,443	-				-1.4
2,186,448	+				-0.4
2,186,448	+				+1.9
2,186,448	+				-0.4
2,186,449	-				-0.6
2,186,449	-				-0.7
2,186,449	-				-2.2
2,186,449	-				+1.1
2,186,449	-				+0.0
2,186,449	-				-1.6
2,186,449	-				+1.3
2,186,449	-				+1.8
2,186,449	-				+0.8
2,186,449	-				-3.2
2,186,449	-				+0.1
2,186,452	+				+1.0
2,186,452	+				+2.1
2,186,452	+				-0.2
2,186,452	+				-3.9
2,186,453	-				-2.1
2,186,453	-				+2.2
2,186,453	-				-0.6
2,186,453	-				+1.0
2,186,453	-				+1.3
2,186,484	+				+0.6
2,186,485	-				+0.4
2,186,485	-				-1.2
2,186,519	+				+1.2
2,186,520	-				-0.9
2,186,563	+				-0.1
2,186,563	+				-0.4
2,186,563	+				-1.5
2,186,563	+				-1.2
2,186,607	+				+1.5
2,186,608	-				+0.9
2,186,652	+				-2.4
2,186,652	+				-3.1
2,186,653	-				+0.3
2,186,653	-				-0.6
2,186,653	-				+0.4
2,186,653	-				+0.5
2,186,654	+				+0.2
2,186,654	+				-0.9
2,186,654	+				+0.5
2,186,654	+				+0.9
2,186,654	+				-1.1
2,186,654	+				+1.5
2,186,654	+				+0.3
2,186,654	+				-0.4
2,186,654	+				+0.8
2,186,654	+				-2.4
2,186,654	+				+0.6
2,186,655	-				-0.4
2,186,655	-				-2.2
2,186,655	-				-1.5
2,186,655	-				-0.5
2,186,655	-				+0.1
2,186,655	-				+0.0
2,186,655	-				+0.4
2,186,655	-				-0.0
2,186,655	-				-1.9
2,186,664	+				-0.0
2,186,664	+				-0.2
2,186,664	+				+0.5
2,186,664	+				-1.5
2,186,664	+				+0.8
2,186,664	+				-1.8
2,186,665	-				+2.2
2,186,665	-				+1.0
2,186,665	-				-3.9
2,186,665	-				-0.7
2,186,668	+				-0.2
2,186,668	+				-3.1
2,186,668	+				-1.5
2,186,668	+				+0.9
2,186,668	+				-1.2
2,186,668	+				+0.0
2,186,669	-				-2.2
2,186,669	-				-3.3
2,186,669	-				+0.6
2,186,669	-				-1.9
2,186,674	+				+0.3
2,186,674	+				-0.1
2,186,675	-				-0.2
2,186,675	-				-0.6
2,186,686	+				+0.0
2,186,687	-				+0.4
2,186,698	+				+0.3
2,186,698	+				-0.1
2,186,699	-				-1.4
2,186,699	-				+4.5
2,186,718	+				+0.4
2,186,718	+				-0.2
2,186,718	+				-1.5
2,186,718	+				+1.1
2,186,718	+				-0.5
2,186,754	+				+1.2
2,186,773	+		EFB2_02032	0.10	-1.9
2,186,773	+		EFB2_02032	0.10	-0.3
2,186,773	+		EFB2_02032	0.10	+1.3
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