Strain Fitness in Escherichia fergusonii Becca around EFB2_01717

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,810,488	+		EFB2_01716	0.72	-1.0
1,810,488	+		EFB2_01716	0.72	-0.2
1,810,517	-		EFB2_01716	0.75	+1.2
1,810,517	-		EFB2_01716	0.75	-0.1
1,810,517	-		EFB2_01716	0.75	-0.9
1,810,518	+		EFB2_01716	0.75	+2.1
1,810,518	+		EFB2_01716	0.75	+0.7
1,810,519	-		EFB2_01716	0.75	-0.9
1,810,519	-		EFB2_01716	0.75	-2.8
1,810,519	-		EFB2_01716	0.75	+0.2
1,810,570	-		EFB2_01716	0.81	-0.4
1,810,601	+		EFB2_01716	0.84	+0.4
1,810,601	+		EFB2_01716	0.84	+0.3
1,810,601	+		EFB2_01716	0.84	+0.8
1,810,601	+		EFB2_01716	0.84	-1.5
1,810,602	-		EFB2_01716	0.84	+0.6
1,810,603	+		EFB2_01716	0.84	-1.1
1,810,603	+		EFB2_01716	0.84	+0.7
1,810,604	-		EFB2_01716	0.84	-1.9
1,810,604	-		EFB2_01716	0.84	-0.5
1,810,604	-		EFB2_01716	0.84	+0.5
1,810,604	-		EFB2_01716	0.84	-0.1
1,810,604	-		EFB2_01716	0.84	+0.1
1,810,604	-		EFB2_01716	0.84	-2.6
1,810,637	-		EFB2_01716	0.88	+0.7
1,810,651	+		EFB2_01716	0.89	-1.3
1,810,651	+		EFB2_01716	0.89	-1.5
1,810,651	+		EFB2_01716	0.89	-1.6
1,810,652	-		EFB2_01716	0.89	+2.5
1,810,652	-		EFB2_01716	0.89	-1.9
1,810,671	-				-1.3
1,810,696	-				-1.0
1,810,719	+				+0.8
1,810,740	+				+0.0
1,810,750	+				-0.2
1,810,751	-				+0.6
1,810,754	-				+0.6
1,810,754	-				-0.7
1,810,754	-				+0.2
1,810,769	+				+0.2
1,810,769	+				-2.4
1,810,769	+				-0.9
1,810,770	-				-0.6
1,810,770	-				-3.7
1,810,829	+				-2.3
1,810,829	+				-1.7
1,810,829	+				+1.7
1,810,829	+				+0.4
1,810,829	+				-1.7
1,810,829	+				+0.9
1,810,829	+				-1.3
1,810,829	+				+0.4
1,810,830	-				+0.2
1,810,830	-				+1.0
1,810,830	-				+1.2
1,810,830	-				+1.1
1,810,830	-				+0.4
1,810,830	-				+0.5
1,810,838	+				+2.7
1,810,838	+				-0.3
1,810,838	+				-2.1
1,810,838	+				+2.4
1,810,838	+				-1.3
1,810,838	+				-2.9
1,810,838	+				+0.8
1,810,838	+				+0.3
1,810,838	+				-1.6
1,810,838	+				-1.5
1,810,839	-				-0.7
1,810,839	-				+0.0
1,810,839	-				+0.9
1,810,839	-				+1.8
1,810,839	-				+1.5
1,810,839	-				+1.0
1,810,839	-				+1.4
1,810,839	-				+2.1
1,810,839	-				-0.3
1,810,839	-				+0.4
1,810,839	-				+1.9
1,810,839	-				+1.1
1,810,839	-				+1.6
1,810,944	-				-2.8
1,810,975	+				-2.1
1,810,975	+				+0.7
1,810,976	-				+1.0
1,810,986	+				+0.8
1,810,986	+				+1.2
1,810,986	+				-0.7
1,810,986	+				-0.4
1,810,987	-				-2.0
1,810,987	-				+0.1
1,810,987	-				+0.2
1,810,987	-				+0.7
1,810,987	-				+0.7
1,810,987	-				+0.7
1,810,987	-				-1.4
1,811,088	+				-0.6
1,811,088	+				+0.6
1,811,089	-				-0.5
1,811,097	+				+0.3
1,811,098	-				+1.0
1,811,098	-				-0.0
1,811,101	+				+1.6
1,811,101	+				-0.6
1,811,102	-				-1.0
1,811,102	-				+1.3
1,811,121	+				-1.5
1,811,121	+				+1.9
1,811,121	+				-0.7
1,811,121	+				-0.5
1,811,121	+				+0.2
1,811,121	+				-1.4
1,811,121	+				+0.7
1,811,121	+				-0.3
1,811,121	+				+0.5
1,811,121	+				+1.4
1,811,121	+				+1.7
1,811,121	+				-0.6
1,811,121	+				+0.5
1,811,121	+				+2.0
1,811,121	+				-0.1
1,811,121	+				-0.3
1,811,121	+				-1.4
1,811,121	+				-0.4
1,811,122	-				+0.3
1,811,122	-				-1.0
1,811,122	-				-2.7
1,811,122	-				-1.8
1,811,122	-				-0.9
1,811,122	-				+1.0
1,811,122	-				+1.5
1,811,122	-				+1.5
1,811,122	-				-1.4
1,811,122	-				-1.6
1,811,122	-				-0.9
1,811,122	-				+1.2
1,811,122	-				-2.1
1,811,122	-				+3.7
1,811,122	-				+0.2
1,811,122	-				-0.4
1,811,122	-				+0.1
1,811,122	-				+2.2
1,811,122	-				+0.0
1,811,122	-				+0.5
1,811,122	-				-2.0
1,811,122	-				+0.7
1,811,122	-				+0.7
1,811,122	-				-0.6
1,811,122	-				-0.4
1,811,123	+				-1.7
1,811,123	+				+0.1
1,811,123	+				-2.5
1,811,123	+				+0.5
1,811,124	-				-1.7
1,811,124	-				+0.1
1,811,124	-				+1.3
1,811,124	-				-1.3
1,811,124	-				-3.1
1,811,124	-				-0.0
1,811,124	-				+0.2
1,811,131	-				+1.1
1,811,147	-				-0.5
1,811,147	-				+1.1
1,811,154	+				-0.1
1,811,154	+				+0.5
1,811,154	+				+1.3
1,811,155	-				-0.2
1,811,155	-				-1.5
1,811,155	-				+1.2
1,811,155	-				+0.9
1,811,193	+				+0.7
1,811,201	-				-0.3
1,811,215	-				-1.0
1,811,215	-				+0.7
1,811,235	+				-0.3
1,811,236	-				-0.2
1,811,253	-				-2.5
1,811,253	-				-2.2
1,811,253	-				-2.1
1,811,256	+				+0.1
1,811,256	+				-0.3
1,811,256	+				+0.8
1,811,256	+				-1.7
1,811,257	-				+0.5
1,811,257	-				+0.2
1,811,257	-				-0.3
1,811,257	-				-0.3
1,811,258	+				-0.6
1,811,259	-				+0.7
1,811,315	+				-1.1
1,811,316	-				-0.2
1,811,316	-				-1.5
1,811,326	+				-0.9
1,811,346	-				-0.9
1,811,355	+				+2.1
1,811,369	+				-1.1
1,811,369	+				+0.7
1,811,369	+				+2.1
1,811,369	+				-0.1
1,811,369	+				-0.6
1,811,370	-				-0.7
1,811,370	-				-1.4
1,811,370	-				+1.1
1,811,370	-				+0.1
1,811,370	-				-2.0
1,811,370	-				+0.4
1,811,385	+				+1.4
1,811,395	-				+0.3
1,811,395	-				+0.1
1,811,395	-				-0.6
1,811,438	+				-1.7
1,811,494	-				+0.4
1,811,494	-				-1.1
1,811,494	-				+1.5
1,811,494	-				-3.3
1,811,518	+				-0.5
1,811,518	+				+0.1
1,811,518	+				+0.9
1,811,519	-				+3.3
1,811,519	-				+0.3
1,811,519	-				-0.2
1,811,542	-				+0.6
1,811,630	+		EFB2_01717	0.13	+1.1
1,811,630	+		EFB2_01717	0.13	+0.8
1,811,631	-		EFB2_01717	0.13	-0.8
1,811,631	-		EFB2_01717	0.13	+2.3
1,811,638	+		EFB2_01717	0.13	+0.3
1,811,639	-		EFB2_01717	0.13	+0.3
1,811,655	+		EFB2_01717	0.14	+1.0
1,811,655	+		EFB2_01717	0.14	-1.8
1,811,655	+		EFB2_01717	0.14	-2.0
1,811,655	+		EFB2_01717	0.14	-3.1
1,811,655	+		EFB2_01717	0.14	-2.4
1,811,656	-		EFB2_01717	0.15	+1.0
1,811,656	-		EFB2_01717	0.15	-0.7
1,811,659	+		EFB2_01717	0.15	+1.6
1,811,659	+		EFB2_01717	0.15	-1.3
1,811,659	+		EFB2_01717	0.15	+0.7
1,811,659	+		EFB2_01717	0.15	-0.1
1,811,659	+		EFB2_01717	0.15	+2.5
1,811,659	+		EFB2_01717	0.15	+1.7
1,811,659	+		EFB2_01717	0.15	+1.7
1,811,659	+		EFB2_01717	0.15	+0.2
1,811,660	-		EFB2_01717	0.15	+0.7
1,811,660	-		EFB2_01717	0.15	-0.4
1,811,660	-		EFB2_01717	0.15	+2.1
1,811,660	-		EFB2_01717	0.15	-0.6
1,811,663	-		EFB2_01717	0.15	-0.3
1,811,670	+		EFB2_01717	0.16	+1.4
1,811,670	+		EFB2_01717	0.16	+1.2
1,811,670	+		EFB2_01717	0.16	+1.0
1,811,670	+		EFB2_01717	0.16	+0.2
1,811,670	+		EFB2_01717	0.16	+0.7
1,811,671	-		EFB2_01717	0.16	-0.5
1,811,671	-		EFB2_01717	0.16	-1.2
1,811,671	-		EFB2_01717	0.16	-1.3
1,811,671	-		EFB2_01717	0.16	-1.6
1,811,848	+		EFB2_01717	0.28	-3.7
1,811,849	-		EFB2_01717	0.28	-0.0
1,811,849	-		EFB2_01717	0.28	+0.3
1,811,849	-		EFB2_01717	0.28	-0.7
1,811,849	-		EFB2_01717	0.28	-0.1
1,811,849	-		EFB2_01717	0.28	-2.0
1,811,849	-		EFB2_01717	0.28	+1.2
1,811,864	+		EFB2_01717	0.29	-2.4
1,811,875	+		EFB2_01717	0.30	+0.9
1,811,875	+		EFB2_01717	0.30	-0.8
1,811,875	+		EFB2_01717	0.30	+0.1
1,811,875	+		EFB2_01717	0.30	-1.9
1,811,875	+		EFB2_01717	0.30	-0.3
1,811,875	+		EFB2_01717	0.30	-0.4
1,811,876	-		EFB2_01717	0.30	+1.7
1,811,935	+		EFB2_01717	0.34	+0.5
1,812,021	-		EFB2_01717	0.40	-1.0
1,812,021	-		EFB2_01717	0.40	+0.5
1,812,021	-		EFB2_01717	0.40	-0.5
1,812,060	+		EFB2_01717	0.43	+0.6
1,812,060	+		EFB2_01717	0.43	-1.6
1,812,060	+		EFB2_01717	0.43	+2.1
1,812,060	+		EFB2_01717	0.43	-0.4
1,812,060	+		EFB2_01717	0.43	+1.6
1,812,060	+		EFB2_01717	0.43	+0.3
1,812,060	+		EFB2_01717	0.43	+0.7
1,812,060	+		EFB2_01717	0.43	+0.7
1,812,061	-		EFB2_01717	0.43	+0.0
1,812,061	-		EFB2_01717	0.43	+1.3
1,812,061	-		EFB2_01717	0.43	+0.1
1,812,061	-		EFB2_01717	0.43	-0.2
1,812,092	-		EFB2_01717	0.45	+2.5
1,812,111	+		EFB2_01717	0.46	+1.9
1,812,111	+		EFB2_01717	0.46	+0.8
1,812,111	+		EFB2_01717	0.46	+0.6
1,812,111	+		EFB2_01717	0.46	-1.6
1,812,111	+		EFB2_01717	0.46	-0.6
1,812,111	+		EFB2_01717	0.46	-0.2
1,812,111	+		EFB2_01717	0.46	-0.3
1,812,111	+		EFB2_01717	0.46	-0.7
1,812,112	-		EFB2_01717	0.46	-0.1
1,812,112	-		EFB2_01717	0.46	-1.1
1,812,112	-		EFB2_01717	0.46	+1.3
1,812,112	-		EFB2_01717	0.46	-1.9
1,812,112	-		EFB2_01717	0.46	-0.1
1,812,112	-		EFB2_01717	0.46	+0.6
1,812,112	-		EFB2_01717	0.46	-0.1
1,812,112	-		EFB2_01717	0.46	-0.1
1,812,112	-		EFB2_01717	0.46	-1.3
1,812,113	+		EFB2_01717	0.46	-1.2
1,812,114	-		EFB2_01717	0.46	+2.2
1,812,127	+		EFB2_01717	0.47	+1.2
1,812,127	+		EFB2_01717	0.47	+0.7
1,812,127	+		EFB2_01717	0.47	-0.8
1,812,128	-		EFB2_01717	0.47	-1.1
1,812,128	-		EFB2_01717	0.47	+0.4
1,812,160	+		EFB2_01717	0.50	+1.3
1,812,160	+		EFB2_01717	0.50	-0.1
1,812,161	-		EFB2_01717	0.50	+0.4
1,812,161	-		EFB2_01717	0.50	-0.4
1,812,161	-		EFB2_01717	0.50	+0.1
1,812,161	-		EFB2_01717	0.50	+0.5
1,812,161	-		EFB2_01717	0.50	-1.9
1,812,161	-		EFB2_01717	0.50	+2.1
1,812,215	-		EFB2_01717	0.53	-2.3
1,812,228	+		EFB2_01717	0.54	-0.3
1,812,228	+		EFB2_01717	0.54	-0.3
1,812,228	+		EFB2_01717	0.54	+0.7
1,812,228	+		EFB2_01717	0.54	-2.8
1,812,229	-		EFB2_01717	0.54	+0.0
1,812,229	-		EFB2_01717	0.54	-1.0
1,812,229	-		EFB2_01717	0.54	-0.1
1,812,268	+		EFB2_01717	0.57	+0.3
1,812,268	+		EFB2_01717	0.57	-1.9
1,812,327	+		EFB2_01717	0.61	-0.4
1,812,365	+		EFB2_01717	0.64	+0.1
1,812,365	+		EFB2_01717	0.64	-1.3
1,812,365	+		EFB2_01717	0.64	-0.9
1,812,366	-		EFB2_01717	0.64	-0.9
1,812,366	-		EFB2_01717	0.64	+0.8
1,812,366	-		EFB2_01717	0.64	+1.4
1,812,366	-		EFB2_01717	0.64	-0.7
1,812,382	-		EFB2_01717	0.65	-1.1
1,812,382	-		EFB2_01717	0.65	+1.1
1,812,388	+		EFB2_01717	0.65	-1.1
1,812,388	+		EFB2_01717	0.65	-0.9
1,812,388	+		EFB2_01717	0.65	-1.0
1,812,388	+		EFB2_01717	0.65	-3.3
1,812,388	+		EFB2_01717	0.65	-0.3
1,812,388	+		EFB2_01717	0.65	-0.2
1,812,389	-		EFB2_01717	0.66	-2.0
1,812,389	-		EFB2_01717	0.66	-0.7
1,812,389	-		EFB2_01717	0.66	-1.0
1,812,389	-		EFB2_01717	0.66	+1.0
1,812,389	-		EFB2_01717	0.66	+1.7
1,812,389	-		EFB2_01717	0.66	+1.3
1,812,413	+		EFB2_01717	0.67	+0.1
1,812,413	+		EFB2_01717	0.67	-3.0
1,812,462	+		EFB2_01717	0.71	+0.4
1,812,462	+		EFB2_01717	0.71	+1.8
1,812,462	+		EFB2_01717	0.71	-0.7
1,812,462	+		EFB2_01717	0.71	-3.1
1,812,463	-		EFB2_01717	0.71	+1.2
1,812,520	-		EFB2_01717	0.75	-0.3
1,812,533	-		EFB2_01717	0.76	-2.0
1,812,596	+		EFB2_01717	0.80	+0.7
1,812,596	+		EFB2_01717	0.80	-0.5
1,812,597	-		EFB2_01717	0.80	+0.2
1,812,597	-		EFB2_01717	0.80	+2.8
1,812,597	-		EFB2_01717	0.80	-1.3
1,812,621	+		EFB2_01717	0.82	-0.8
1,812,622	-		EFB2_01717	0.82	+0.3
1,812,714	+		EFB2_01717	0.88	-1.1
1,812,714	+		EFB2_01717	0.88	+0.7
1,812,714	+		EFB2_01717	0.88	-0.5
1,812,714	+		EFB2_01717	0.88	-0.1
1,812,714	+		EFB2_01717	0.88	-1.7
1,812,714	+		EFB2_01717	0.88	-1.5
1,812,715	-		EFB2_01717	0.88	+1.4
1,812,715	-		EFB2_01717	0.88	-0.9
1,812,715	-		EFB2_01717	0.88	+0.3
1,812,813	+				+1.6
1,812,872	+				+0.1
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