Strain Fitness in Escherichia fergusonii Becca around EFB2_01679

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,766,174	+				+2.1
1,766,175	-				+1.1
1,766,175	-				+0.6
1,766,184	+				-0.7
1,766,185	-				+0.6
1,766,185	-				-2.1
1,766,185	-				+0.8
1,766,191	+		EFB2_01678	0.11	+0.6
1,766,224	-		EFB2_01678	0.14	-0.7
1,766,355	-		EFB2_01678	0.25	+2.1
1,766,368	-		EFB2_01678	0.27	+0.5
1,766,368	-		EFB2_01678	0.27	+2.3
1,766,368	-		EFB2_01678	0.27	-0.3
1,766,368	-		EFB2_01678	0.27	-0.3
1,766,368	-		EFB2_01678	0.27	-0.7
1,766,395	+		EFB2_01678	0.29	-1.5
1,766,395	+		EFB2_01678	0.29	-1.3
1,766,395	+		EFB2_01678	0.29	-1.0
1,766,395	+		EFB2_01678	0.29	-1.5
1,766,395	+		EFB2_01678	0.29	-0.4
1,766,395	+		EFB2_01678	0.29	+2.6
1,766,395	+		EFB2_01678	0.29	-2.8
1,766,395	+		EFB2_01678	0.29	-2.0
1,766,396	-		EFB2_01678	0.29	+0.5
1,766,396	-		EFB2_01678	0.29	-1.8
1,766,396	-		EFB2_01678	0.29	+1.0
1,766,396	-		EFB2_01678	0.29	+0.8
1,766,396	-		EFB2_01678	0.29	+0.3
1,766,489	+		EFB2_01678	0.38	+1.1
1,766,489	+		EFB2_01678	0.38	-0.3
1,766,489	+		EFB2_01678	0.38	+0.2
1,766,489	+		EFB2_01678	0.38	-2.1
1,766,489	+		EFB2_01678	0.38	-1.5
1,766,489	+		EFB2_01678	0.38	-0.7
1,766,489	+		EFB2_01678	0.38	+0.6
1,766,490	-		EFB2_01678	0.38	-0.9
1,766,490	-		EFB2_01678	0.38	-1.8
1,766,490	-		EFB2_01678	0.38	-1.5
1,766,490	-		EFB2_01678	0.38	-0.4
1,766,500	+		EFB2_01678	0.39	-2.7
1,766,501	-		EFB2_01678	0.39	-0.5
1,766,501	-		EFB2_01678	0.39	+0.2
1,766,501	-		EFB2_01678	0.39	-0.5
1,766,578	+		EFB2_01678	0.46	-1.3
1,766,578	+		EFB2_01678	0.46	+1.7
1,766,578	+		EFB2_01678	0.46	+0.8
1,766,578	+		EFB2_01678	0.46	+0.1
1,766,578	+		EFB2_01678	0.46	-0.3
1,766,578	+		EFB2_01678	0.46	-2.9
1,766,578	+		EFB2_01678	0.46	-1.4
1,766,578	+		EFB2_01678	0.46	-0.1
1,766,578	+		EFB2_01678	0.46	+1.7
1,766,578	+		EFB2_01678	0.46	-0.3
1,766,579	-		EFB2_01678	0.46	+0.7
1,766,579	-		EFB2_01678	0.46	+1.0
1,766,579	-		EFB2_01678	0.46	-2.9
1,766,579	-		EFB2_01678	0.46	+2.1
1,766,651	+		EFB2_01678	0.53	+1.4
1,766,651	+		EFB2_01678	0.53	+0.4
1,766,651	+		EFB2_01678	0.53	-1.7
1,766,651	+		EFB2_01678	0.53	-1.8
1,766,651	+		EFB2_01678	0.53	-0.0
1,766,651	+		EFB2_01678	0.53	+1.2
1,766,652	-		EFB2_01678	0.53	-2.9
1,766,652	-		EFB2_01678	0.53	+1.1
1,766,652	-		EFB2_01678	0.53	+1.3
1,766,652	-		EFB2_01678	0.53	+1.2
1,766,652	-		EFB2_01678	0.53	+0.4
1,766,652	-		EFB2_01678	0.53	+1.5
1,766,652	-		EFB2_01678	0.53	+1.1
1,766,652	-		EFB2_01678	0.53	-0.2
1,766,652	-		EFB2_01678	0.53	+1.1
1,766,652	-		EFB2_01678	0.53	+0.5
1,766,661	-		EFB2_01678	0.53	-2.1
1,766,661	-		EFB2_01678	0.53	-0.3
1,766,661	-		EFB2_01678	0.53	-2.3
1,766,687	+		EFB2_01678	0.56	-0.7
1,766,687	+		EFB2_01678	0.56	-0.7
1,766,687	+		EFB2_01678	0.56	+0.7
1,766,687	+		EFB2_01678	0.56	+0.6
1,766,688	-		EFB2_01678	0.56	+0.1
1,766,689	+		EFB2_01678	0.56	+0.3
1,766,689	+		EFB2_01678	0.56	-1.6
1,766,690	-		EFB2_01678	0.56	-0.7
1,766,690	-		EFB2_01678	0.56	-0.6
1,766,690	-		EFB2_01678	0.56	+1.6
1,766,690	-		EFB2_01678	0.56	-0.1
1,766,728	+		EFB2_01678	0.60	+0.5
1,766,728	+		EFB2_01678	0.60	-0.6
1,766,728	+		EFB2_01678	0.60	+0.3
1,766,728	+		EFB2_01678	0.60	+1.3
1,766,729	-		EFB2_01678	0.60	+0.2
1,766,729	-		EFB2_01678	0.60	-0.9
1,766,729	-		EFB2_01678	0.60	+1.2
1,766,729	-		EFB2_01678	0.60	+0.3
1,766,729	-		EFB2_01678	0.60	-1.1
1,766,729	-		EFB2_01678	0.60	+0.8
1,766,732	+		EFB2_01678	0.60	-0.0
1,766,732	+		EFB2_01678	0.60	-3.3
1,766,732	+		EFB2_01678	0.60	-2.7
1,766,732	+		EFB2_01678	0.60	-1.9
1,766,733	-		EFB2_01678	0.60	+2.0
1,766,733	-		EFB2_01678	0.60	-0.3
1,766,733	-		EFB2_01678	0.60	-0.0
1,766,733	-		EFB2_01678	0.60	-1.5
1,766,783	+		EFB2_01678	0.65	-1.1
1,766,842	+		EFB2_01678	0.70	+0.4
1,766,842	+		EFB2_01678	0.70	-1.1
1,766,842	+		EFB2_01678	0.70	+0.3
1,766,842	+		EFB2_01678	0.70	-2.5
1,766,842	+		EFB2_01678	0.70	-1.3
1,766,842	+		EFB2_01678	0.70	-0.9
1,766,843	-		EFB2_01678	0.70	-1.8
1,766,843	-		EFB2_01678	0.70	-0.3
1,766,843	-		EFB2_01678	0.70	+0.2
1,766,843	-		EFB2_01678	0.70	+3.5
1,766,863	+		EFB2_01678	0.72	-0.2
1,766,863	+		EFB2_01678	0.72	+1.1
1,766,863	+		EFB2_01678	0.72	-2.7
1,766,863	+		EFB2_01678	0.72	-1.7
1,766,863	+		EFB2_01678	0.72	+0.0
1,766,863	+		EFB2_01678	0.72	-2.4
1,766,864	-		EFB2_01678	0.72	+0.1
1,766,928	+		EFB2_01678	0.78	-0.9
1,766,928	+		EFB2_01678	0.78	-1.6
1,766,929	-		EFB2_01678	0.78	-0.6
1,766,929	-		EFB2_01678	0.78	-2.2
1,766,929	-		EFB2_01678	0.78	+0.1
1,766,929	-		EFB2_01678	0.78	-1.6
1,766,929	-		EFB2_01678	0.78	+2.0
1,766,947	+		EFB2_01678	0.80	-0.5
1,766,947	+		EFB2_01678	0.80	+0.6
1,766,948	-		EFB2_01678	0.80	-0.9
1,766,948	-		EFB2_01678	0.80	+0.9
1,766,951	+		EFB2_01678	0.80	-0.9
1,766,951	+		EFB2_01678	0.80	+0.5
1,766,951	+		EFB2_01678	0.80	-2.4
1,766,951	+		EFB2_01678	0.80	-0.3
1,766,951	+		EFB2_01678	0.80	+1.2
1,766,951	+		EFB2_01678	0.80	-0.0
1,766,951	+		EFB2_01678	0.80	-0.0
1,766,951	+		EFB2_01678	0.80	+0.7
1,766,952	-		EFB2_01678	0.80	-0.9
1,766,952	-		EFB2_01678	0.80	+2.0
1,766,952	-		EFB2_01678	0.80	-1.9
1,766,952	-		EFB2_01678	0.80	-0.6
1,766,952	-		EFB2_01678	0.80	+2.4
1,766,952	-		EFB2_01678	0.80	+1.0
1,766,952	-		EFB2_01678	0.80	+0.6
1,767,022	-		EFB2_01678	0.86	-0.0
1,767,024	+		EFB2_01678	0.87	-1.6
1,767,024	+		EFB2_01678	0.87	-1.1
1,767,024	+		EFB2_01678	0.87	-1.4
1,767,025	-		EFB2_01678	0.87	+0.2
1,767,107	+				+1.1
1,767,107	+				-0.9
1,767,108	-				-2.2
1,767,113	+				+0.2
1,767,113	+				+0.3
1,767,114	-				-1.2
1,767,123	+				+0.1
1,767,160	+				-0.7
1,767,161	-				-0.5
1,767,172	+				+0.3
1,767,172	+				+1.7
1,767,172	+				-2.7
1,767,172	+				-0.5
1,767,172	+				-0.8
1,767,172	+				-0.0
1,767,172	+				+1.1
1,767,172	+				-2.4
1,767,172	+				-2.2
1,767,172	+				+1.2
1,767,173	-				+0.8
1,767,173	-				-0.9
1,767,173	-				-1.6
1,767,173	-				+0.9
1,767,173	-				-0.3
1,767,173	-				+0.5
1,767,173	-				-0.3
1,767,173	-				-1.5
1,767,173	-				-0.9
1,767,173	-				-0.3
1,767,173	-				+0.1
1,767,173	-				-0.7
1,767,173	-				-2.2
1,767,216	-				+0.4
1,767,223	+				-0.7
1,767,223	+				+1.2
1,767,224	-				-2.1
1,767,224	-				-2.5
1,767,224	-				-2.2
1,767,224	-				-1.7
1,767,224	-				+1.6
1,767,224	-				-2.1
1,767,234	-				+0.4
1,767,234	-				+1.1
1,767,250	+				-1.2
1,767,250	+				+1.4
1,767,251	-				-2.8
1,767,260	+				+0.4
1,767,262	-				+0.3
1,767,282	-				-2.7
1,767,313	+				-0.7
1,767,313	+				+0.9
1,767,313	+				+1.0
1,767,313	+				+0.7
1,767,313	+				+0.7
1,767,313	+				-2.9
1,767,313	+				+2.7
1,767,313	+				+0.7
1,767,313	+				-1.0
1,767,313	+				-0.4
1,767,313	+				+0.7
1,767,313	+				+1.4
1,767,313	+				-1.1
1,767,313	+				+0.5
1,767,313	+				-0.4
1,767,314	-				-1.7
1,767,314	-				+0.8
1,767,314	-				+0.7
1,767,314	-				-1.7
1,767,314	-				-1.8
1,767,314	-				-0.1
1,767,314	-				+1.0
1,767,314	-				+1.1
1,767,314	-				+1.5
1,767,314	-				+1.1
1,767,314	-				-0.7
1,767,314	-				-0.0
1,767,314	-				-0.1
1,767,314	-				+2.7
1,767,314	-				-2.4
1,767,314	-				-1.8
1,767,314	-				+2.1
1,767,314	-				-0.3
1,767,314	-				+0.4
1,767,314	-				-0.7
1,767,314	-				+0.6
1,767,331	+				-1.6
1,767,331	+				-0.3
1,767,331	+				-2.0
1,767,331	+				-2.4
1,767,331	+				+0.3
1,767,332	-				-2.6
1,767,332	-				-2.0
1,767,332	-				+1.7
1,767,332	-				-0.1
1,767,332	-				-2.5
1,767,332	-				+0.5
1,767,332	-				-0.1
1,767,332	-				-2.6
1,767,334	+				-1.1
1,767,334	+				+0.7
1,767,335	-				+0.4
1,767,335	-				-0.1
1,767,335	-				-1.1
1,767,335	-				+2.1
1,767,335	-				-0.3
1,767,348	+				-1.6
1,767,349	-				-0.1
1,767,349	-				-0.7
1,767,375	+		EFB2_01679	0.11	+1.3
1,767,375	+		EFB2_01679	0.11	-0.9
1,767,379	-		EFB2_01679	0.11	+1.9
1,767,379	-		EFB2_01679	0.11	-1.4
1,767,390	-		EFB2_01679	0.12	-0.7
1,767,407	+		EFB2_01679	0.13	+0.3
1,767,407	+		EFB2_01679	0.13	-0.3
1,767,407	+		EFB2_01679	0.13	+1.3
1,767,408	-		EFB2_01679	0.13	+0.7
1,767,458	+		EFB2_01679	0.16	-0.6
1,767,458	+		EFB2_01679	0.16	-0.0
1,767,458	+		EFB2_01679	0.16	-0.3
1,767,458	+		EFB2_01679	0.16	-1.6
1,767,458	+		EFB2_01679	0.16	-1.7
1,767,458	+		EFB2_01679	0.16	-0.8
1,767,458	+		EFB2_01679	0.16	+1.1
1,767,458	+		EFB2_01679	0.16	+1.1
1,767,458	+		EFB2_01679	0.16	-0.7
1,767,458	+		EFB2_01679	0.16	+1.5
1,767,458	+		EFB2_01679	0.16	-0.6
1,767,459	-		EFB2_01679	0.16	+1.7
1,767,459	-		EFB2_01679	0.16	-0.3
1,767,459	-		EFB2_01679	0.16	-1.5
1,767,459	-		EFB2_01679	0.16	+0.9
1,767,459	-		EFB2_01679	0.16	+3.1
1,767,459	-		EFB2_01679	0.16	-3.9
1,767,459	-		EFB2_01679	0.16	-1.6
1,767,459	-		EFB2_01679	0.16	-0.1
1,767,460	+		EFB2_01679	0.16	+0.7
1,767,460	+		EFB2_01679	0.16	-1.6
1,767,460	+		EFB2_01679	0.16	-0.7
1,767,460	+		EFB2_01679	0.16	-1.7
1,767,460	+		EFB2_01679	0.16	-1.3
1,767,460	+		EFB2_01679	0.16	+0.8
1,767,460	+		EFB2_01679	0.16	-0.2
1,767,460	+		EFB2_01679	0.16	-0.0
1,767,460	+		EFB2_01679	0.16	-0.2
1,767,460	+		EFB2_01679	0.16	+1.7
1,767,460	+		EFB2_01679	0.16	+0.1
1,767,460	+		EFB2_01679	0.16	+2.2
1,767,460	+		EFB2_01679	0.16	+0.6
1,767,461	-		EFB2_01679	0.16	-0.4
1,767,461	-		EFB2_01679	0.16	-1.3
1,767,461	-		EFB2_01679	0.16	-0.3
1,767,461	-		EFB2_01679	0.16	-0.9
1,767,461	-		EFB2_01679	0.16	+0.5
1,767,461	-		EFB2_01679	0.16	+2.3
1,767,461	-		EFB2_01679	0.16	+1.3
1,767,461	-		EFB2_01679	0.16	-0.2
1,767,461	-		EFB2_01679	0.16	+0.7
1,767,461	-		EFB2_01679	0.16	-1.7
1,767,461	-		EFB2_01679	0.16	-0.5
1,767,461	-		EFB2_01679	0.16	+2.1
1,767,461	-		EFB2_01679	0.16	-0.2
1,767,461	-		EFB2_01679	0.16	+0.1
1,767,461	-		EFB2_01679	0.16	-0.2
1,767,473	+		EFB2_01679	0.17	+0.8
1,767,473	+		EFB2_01679	0.17	+0.4
1,767,473	+		EFB2_01679	0.17	-0.4
1,767,474	-		EFB2_01679	0.17	+1.2
1,767,474	-		EFB2_01679	0.17	-1.5
1,767,474	-		EFB2_01679	0.17	-1.6
1,767,474	-		EFB2_01679	0.17	-2.5
1,767,475	+		EFB2_01679	0.17	-0.8
1,767,475	+		EFB2_01679	0.17	+1.2
1,767,475	+		EFB2_01679	0.17	-0.5
1,767,475	+		EFB2_01679	0.17	-1.2
1,767,475	+		EFB2_01679	0.17	+0.6
1,767,475	+		EFB2_01679	0.17	+0.6
1,767,475	+		EFB2_01679	0.17	-0.3
1,767,475	+		EFB2_01679	0.17	-0.5
1,767,475	+		EFB2_01679	0.17	+1.3
1,767,476	-		EFB2_01679	0.17	+0.9
1,767,476	-		EFB2_01679	0.17	-0.3
1,767,476	-		EFB2_01679	0.17	-0.0
1,767,498	+		EFB2_01679	0.18	+0.7
1,767,532	-		EFB2_01679	0.20	+1.0
1,767,550	+		EFB2_01679	0.21	-0.2
1,767,550	+		EFB2_01679	0.21	-3.4
1,767,550	+		EFB2_01679	0.21	-1.6
1,767,551	-		EFB2_01679	0.21	-2.2
1,767,551	-		EFB2_01679	0.21	+0.4
1,767,551	-		EFB2_01679	0.21	-0.5
1,767,551	-		EFB2_01679	0.21	-0.7
1,767,551	-		EFB2_01679	0.21	+1.6
1,767,588	-		EFB2_01679	0.23	-2.5
1,767,588	-		EFB2_01679	0.23	+2.4
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1,769,765	+		EFB2_01680	0.45	+0.7
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1,769,782	+		EFB2_01680	0.46	-2.7
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1,769,944	+		EFB2_01680	0.56	-1.2
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