Strain Fitness in Escherichia fergusonii Becca around EFB2_01118

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,166,875	-				-1.7
1,166,941	-				-0.3
1,167,066	-				-1.7
1,167,115	-				-3.2
1,167,142	+				+0.3
1,167,142	+				+0.9
1,167,143	-				-1.4
1,167,143	-				+1.4
1,167,143	-				-2.0
1,167,146	+				-1.6
1,167,147	-				+1.2
1,167,242	+		EFB2_01117	0.15	-0.3
1,167,242	+		EFB2_01117	0.15	-1.4
1,167,242	+		EFB2_01117	0.15	-1.8
1,167,242	+		EFB2_01117	0.15	+0.7
1,167,242	+		EFB2_01117	0.15	-0.2
1,167,242	+		EFB2_01117	0.15	+1.7
1,167,242	+		EFB2_01117	0.15	+1.4
1,167,242	+		EFB2_01117	0.15	-1.4
1,167,242	+		EFB2_01117	0.15	+1.3
1,167,242	+		EFB2_01117	0.15	+1.9
1,167,242	+		EFB2_01117	0.15	+2.4
1,167,242	+		EFB2_01117	0.15	+0.3
1,167,242	+		EFB2_01117	0.15	-2.6
1,167,242	+		EFB2_01117	0.15	-3.3
1,167,242	+		EFB2_01117	0.15	+0.3
1,167,242	+		EFB2_01117	0.15	+0.6
1,167,242	+		EFB2_01117	0.15	+0.5
1,167,242	+		EFB2_01117	0.15	-1.0
1,167,243	-		EFB2_01117	0.15	-0.5
1,167,243	-		EFB2_01117	0.15	+0.7
1,167,243	-		EFB2_01117	0.15	+0.4
1,167,243	-		EFB2_01117	0.15	-2.5
1,167,243	-		EFB2_01117	0.15	+0.7
1,167,243	-		EFB2_01117	0.15	-0.1
1,167,243	-		EFB2_01117	0.15	-0.4
1,167,243	-		EFB2_01117	0.15	+0.2
1,167,243	-		EFB2_01117	0.15	-0.1
1,167,243	-		EFB2_01117	0.15	+0.7
1,167,243	-		EFB2_01117	0.15	-2.3
1,167,243	-		EFB2_01117	0.15	+0.3
1,167,243	-		EFB2_01117	0.15	-0.3
1,167,243	-		EFB2_01117	0.15	+0.2
1,167,243	-		EFB2_01117	0.15	+0.8
1,167,243	-		EFB2_01117	0.15	-2.6
1,167,243	-		EFB2_01117	0.15	+0.7
1,167,243	-		EFB2_01117	0.15	-0.5
1,167,247	+		EFB2_01117	0.15	+0.4
1,167,247	+		EFB2_01117	0.15	-0.3
1,167,267	+		EFB2_01117	0.18	-1.3
1,167,267	+		EFB2_01117	0.18	+1.1
1,167,273	+		EFB2_01117	0.19	+0.2
1,167,273	+		EFB2_01117	0.19	-0.1
1,167,273	+		EFB2_01117	0.19	+3.0
1,167,274	-		EFB2_01117	0.19	+1.2
1,167,279	+		EFB2_01117	0.20	-3.5
1,167,279	+		EFB2_01117	0.20	-2.1
1,167,279	+		EFB2_01117	0.20	-2.5
1,167,279	+		EFB2_01117	0.20	+0.8
1,167,279	+		EFB2_01117	0.20	+1.2
1,167,279	+		EFB2_01117	0.20	+0.1
1,167,280	-		EFB2_01117	0.20	-2.5
1,167,280	-		EFB2_01117	0.20	+0.6
1,167,280	-		EFB2_01117	0.20	-1.3
1,167,280	-		EFB2_01117	0.20	+0.5
1,167,280	-		EFB2_01117	0.20	-1.9
1,167,309	+		EFB2_01117	0.25	+2.6
1,167,309	+		EFB2_01117	0.25	+0.5
1,167,309	+		EFB2_01117	0.25	-0.7
1,167,309	+		EFB2_01117	0.25	-1.0
1,167,309	+		EFB2_01117	0.25	+0.6
1,167,310	-		EFB2_01117	0.25	-2.4
1,167,310	-		EFB2_01117	0.25	+1.2
1,167,318	+		EFB2_01117	0.26	-0.7
1,167,442	-		EFB2_01117	0.45	-1.8
1,167,459	+		EFB2_01117	0.48	-1.6
1,167,460	-		EFB2_01117	0.48	-0.8
1,167,484	+		EFB2_01117	0.52	-0.5
1,167,484	+		EFB2_01117	0.52	-0.1
1,167,484	+		EFB2_01117	0.52	-0.5
1,167,484	+		EFB2_01117	0.52	+0.5
1,167,484	+		EFB2_01117	0.52	+1.0
1,167,484	+		EFB2_01117	0.52	-0.3
1,167,484	+		EFB2_01117	0.52	-1.5
1,167,484	+		EFB2_01117	0.52	-0.5
1,167,484	+		EFB2_01117	0.52	+0.5
1,167,484	+		EFB2_01117	0.52	-0.4
1,167,484	+		EFB2_01117	0.52	+0.9
1,167,484	+		EFB2_01117	0.52	+0.3
1,167,485	-		EFB2_01117	0.52	-2.5
1,167,485	-		EFB2_01117	0.52	+2.7
1,167,485	-		EFB2_01117	0.52	-2.4
1,167,485	-		EFB2_01117	0.52	-0.9
1,167,485	-		EFB2_01117	0.52	+1.0
1,167,485	-		EFB2_01117	0.52	+1.4
1,167,507	+		EFB2_01117	0.55	+0.8
1,167,507	+		EFB2_01117	0.55	-0.8
1,167,507	+		EFB2_01117	0.55	+0.6
1,167,508	-		EFB2_01117	0.56	+1.3
1,167,513	+		EFB2_01117	0.56	+1.5
1,167,513	+		EFB2_01117	0.56	+2.1
1,167,513	+		EFB2_01117	0.56	-0.6
1,167,514	-		EFB2_01117	0.56	-2.5
1,167,529	+		EFB2_01117	0.59	-0.1
1,167,603	-		EFB2_01117	0.70	+1.2
1,167,603	-		EFB2_01117	0.70	-1.1
1,167,688	+		EFB2_01117	0.83	+0.3
1,167,688	+		EFB2_01117	0.83	-1.1
1,167,688	+		EFB2_01117	0.83	+0.9
1,167,689	-		EFB2_01117	0.83	+0.1
1,167,689	-		EFB2_01117	0.83	+2.0
1,167,749	+				+1.7
1,167,749	+				-0.1
1,167,773	-				-1.8
1,167,794	-				-0.6
1,167,801	+				+0.0
1,167,829	-				+1.2
1,167,829	-				+0.5
1,167,829	-				+0.4
1,167,884	+				+1.7
1,167,937	-				+1.9
1,167,978	+		EFB2_01118	0.13	-0.6
1,167,978	+		EFB2_01118	0.13	-1.6
1,167,978	+		EFB2_01118	0.13	+0.0
1,167,979	-		EFB2_01118	0.14	-0.5
1,168,013	-		EFB2_01118	0.17	-0.3
1,168,022	+		EFB2_01118	0.17	-0.2
1,168,022	+		EFB2_01118	0.17	+0.3
1,168,022	+		EFB2_01118	0.17	-1.4
1,168,022	+		EFB2_01118	0.17	-2.0
1,168,022	+		EFB2_01118	0.17	+1.5
1,168,022	+		EFB2_01118	0.17	+0.3
1,168,022	+		EFB2_01118	0.17	-2.6
1,168,022	+		EFB2_01118	0.17	-1.2
1,168,022	+		EFB2_01118	0.17	-1.5
1,168,023	-		EFB2_01118	0.17	-0.7
1,168,023	-		EFB2_01118	0.17	-1.1
1,168,023	-		EFB2_01118	0.17	+1.1
1,168,023	-		EFB2_01118	0.17	+1.5
1,168,023	-		EFB2_01118	0.17	-2.5
1,168,023	-		EFB2_01118	0.17	+2.6
1,168,023	-		EFB2_01118	0.17	-1.1
1,168,023	-		EFB2_01118	0.17	-1.6
1,168,025	+		EFB2_01118	0.18	+0.8
1,168,025	+		EFB2_01118	0.18	+1.4
1,168,025	+		EFB2_01118	0.18	+0.1
1,168,025	+		EFB2_01118	0.18	-3.1
1,168,025	+		EFB2_01118	0.18	-1.5
1,168,025	+		EFB2_01118	0.18	+2.1
1,168,026	-		EFB2_01118	0.18	-1.7
1,168,026	-		EFB2_01118	0.18	-0.5
1,168,026	-		EFB2_01118	0.18	+0.1
1,168,026	-		EFB2_01118	0.18	-1.1
1,168,026	-		EFB2_01118	0.18	+0.8
1,168,026	-		EFB2_01118	0.18	+1.0
1,168,026	-		EFB2_01118	0.18	+1.1
1,168,026	-		EFB2_01118	0.18	-1.7
1,168,026	-		EFB2_01118	0.18	-0.1
1,168,026	-		EFB2_01118	0.18	+1.7
1,168,026	-		EFB2_01118	0.18	-3.1
1,168,026	-		EFB2_01118	0.18	+0.2
1,168,029	+		EFB2_01118	0.18	+2.4
1,168,029	+		EFB2_01118	0.18	+0.1
1,168,029	+		EFB2_01118	0.18	-0.4
1,168,029	+		EFB2_01118	0.18	-0.1
1,168,029	+		EFB2_01118	0.18	+2.7
1,168,029	+		EFB2_01118	0.18	-1.4
1,168,030	-		EFB2_01118	0.18	+2.5
1,168,030	-		EFB2_01118	0.18	-0.2
1,168,030	-		EFB2_01118	0.18	+0.3
1,168,041	+		EFB2_01118	0.19	-2.5
1,168,041	+		EFB2_01118	0.19	+0.1
1,168,041	+		EFB2_01118	0.19	-2.0
1,168,041	+		EFB2_01118	0.19	-0.0
1,168,041	+		EFB2_01118	0.19	+0.8
1,168,041	+		EFB2_01118	0.19	+1.1
1,168,041	+		EFB2_01118	0.19	+0.1
1,168,042	-		EFB2_01118	0.19	-0.2
1,168,042	-		EFB2_01118	0.19	+0.1
1,168,042	-		EFB2_01118	0.19	+0.6
1,168,042	-		EFB2_01118	0.19	-0.6
1,168,067	+		EFB2_01118	0.21	+1.2
1,168,067	+		EFB2_01118	0.21	-0.0
1,168,067	+		EFB2_01118	0.21	+1.6
1,168,068	-		EFB2_01118	0.21	+1.5
1,168,090	+		EFB2_01118	0.23	-0.1
1,168,090	+		EFB2_01118	0.23	+0.4
1,168,090	+		EFB2_01118	0.23	-2.8
1,168,091	-		EFB2_01118	0.23	+0.8
1,168,101	+		EFB2_01118	0.24	+0.0
1,168,102	-		EFB2_01118	0.24	+0.4
1,168,125	+		EFB2_01118	0.26	+2.5
1,168,125	+		EFB2_01118	0.26	+0.6
1,168,125	+		EFB2_01118	0.26	-0.2
1,168,125	+		EFB2_01118	0.26	+1.9
1,168,125	+		EFB2_01118	0.26	-0.1
1,168,125	+		EFB2_01118	0.26	+0.1
1,168,126	-		EFB2_01118	0.26	-3.7
1,168,126	-		EFB2_01118	0.26	-0.9
1,168,126	-		EFB2_01118	0.26	+0.9
1,168,126	-		EFB2_01118	0.26	+0.3
1,168,126	-		EFB2_01118	0.26	-1.1
1,168,126	-		EFB2_01118	0.26	-0.5
1,168,126	-		EFB2_01118	0.26	+0.9
1,168,126	-		EFB2_01118	0.26	+0.6
1,168,131	+		EFB2_01118	0.27	+0.6
1,168,131	+		EFB2_01118	0.27	-0.2
1,168,131	+		EFB2_01118	0.27	-0.2
1,168,131	+		EFB2_01118	0.27	+0.7
1,168,131	+		EFB2_01118	0.27	+0.4
1,168,132	-		EFB2_01118	0.27	-1.1
1,168,132	-		EFB2_01118	0.27	+0.2
1,168,207	-		EFB2_01118	0.33	+0.2
1,168,217	+		EFB2_01118	0.34	+0.1
1,168,217	+		EFB2_01118	0.34	-0.3
1,168,218	-		EFB2_01118	0.34	+0.5
1,168,218	-		EFB2_01118	0.34	-1.7
1,168,269	+		EFB2_01118	0.39	-0.3
1,168,269	+		EFB2_01118	0.39	-0.3
1,168,269	+		EFB2_01118	0.39	-0.1
1,168,269	+		EFB2_01118	0.39	-0.3
1,168,270	-		EFB2_01118	0.39	-2.5
1,168,270	-		EFB2_01118	0.39	+1.0
1,168,270	-		EFB2_01118	0.39	+0.2
1,168,270	-		EFB2_01118	0.39	+0.5
1,168,270	-		EFB2_01118	0.39	+0.1
1,168,270	-		EFB2_01118	0.39	-2.4
1,168,273	+		EFB2_01118	0.39	-1.0
1,168,273	+		EFB2_01118	0.39	+0.2
1,168,273	+		EFB2_01118	0.39	+0.6
1,168,273	+		EFB2_01118	0.39	-2.1
1,168,273	+		EFB2_01118	0.39	-1.9
1,168,273	+		EFB2_01118	0.39	+0.4
1,168,273	+		EFB2_01118	0.39	-2.1
1,168,273	+		EFB2_01118	0.39	+1.3
1,168,273	+		EFB2_01118	0.39	-0.8
1,168,273	+		EFB2_01118	0.39	-1.0
1,168,273	+		EFB2_01118	0.39	-0.3
1,168,273	+		EFB2_01118	0.39	-1.8
1,168,273	+		EFB2_01118	0.39	-2.6
1,168,273	+		EFB2_01118	0.39	+1.7
1,168,273	+		EFB2_01118	0.39	-2.0
1,168,273	+		EFB2_01118	0.39	-2.2
1,168,273	+		EFB2_01118	0.39	-0.2
1,168,274	-		EFB2_01118	0.39	-1.4
1,168,274	-		EFB2_01118	0.39	+0.9
1,168,274	-		EFB2_01118	0.39	+0.1
1,168,274	-		EFB2_01118	0.39	-0.8
1,168,274	-		EFB2_01118	0.39	-0.2
1,168,274	-		EFB2_01118	0.39	-0.7
1,168,274	-		EFB2_01118	0.39	-0.4
1,168,274	-		EFB2_01118	0.39	+0.7
1,168,274	-		EFB2_01118	0.39	-0.1
1,168,274	-		EFB2_01118	0.39	+0.3
1,168,274	-		EFB2_01118	0.39	-1.6
1,168,274	-		EFB2_01118	0.39	-0.9
1,168,274	-		EFB2_01118	0.39	+0.7
1,168,329	+		EFB2_01118	0.44	+0.4
1,168,370	+		EFB2_01118	0.48	+0.4
1,168,371	+		EFB2_01118	0.48	-0.7
1,168,371	+		EFB2_01118	0.48	-2.4
1,168,371	+		EFB2_01118	0.48	+0.7
1,168,371	+		EFB2_01118	0.48	-3.1
1,168,371	+		EFB2_01118	0.48	+0.1
1,168,371	+		EFB2_01118	0.48	+0.5
1,168,371	+		EFB2_01118	0.48	-3.1
1,168,371	+		EFB2_01118	0.48	-0.2
1,168,371	+		EFB2_01118	0.48	+2.1
1,168,371	+		EFB2_01118	0.48	+0.6
1,168,372	-		EFB2_01118	0.48	+0.5
1,168,422	+		EFB2_01118	0.52	-0.9
1,168,422	+		EFB2_01118	0.52	-1.4
1,168,423	-		EFB2_01118	0.52	+1.2
1,168,423	-		EFB2_01118	0.52	-0.6
1,168,423	-		EFB2_01118	0.52	+0.3
1,168,423	-		EFB2_01118	0.52	-2.5
1,168,423	-		EFB2_01118	0.52	-0.4
1,168,432	+		EFB2_01118	0.53	+0.6
1,168,432	+		EFB2_01118	0.53	+1.2
1,168,432	+		EFB2_01118	0.53	-2.0
1,168,432	+		EFB2_01118	0.53	+0.4
1,168,432	+		EFB2_01118	0.53	+0.8
1,168,432	+		EFB2_01118	0.53	-0.9
1,168,432	+		EFB2_01118	0.53	-2.4
1,168,432	+		EFB2_01118	0.53	+0.5
1,168,432	+		EFB2_01118	0.53	-0.1
1,168,432	+		EFB2_01118	0.53	-0.6
1,168,432	+		EFB2_01118	0.53	+1.1
1,168,432	+		EFB2_01118	0.53	-0.2
1,168,432	+		EFB2_01118	0.53	-0.8
1,168,432	+		EFB2_01118	0.53	+0.1
1,168,432	+		EFB2_01118	0.53	+0.1
1,168,432	+		EFB2_01118	0.53	+1.3
1,168,433	-		EFB2_01118	0.53	-0.4
1,168,433	-		EFB2_01118	0.53	-1.0
1,168,433	-		EFB2_01118	0.53	-1.1
1,168,433	-		EFB2_01118	0.53	+1.2
1,168,433	-		EFB2_01118	0.53	-0.9
1,168,434	+		EFB2_01118	0.53	-0.1
1,168,434	+		EFB2_01118	0.53	+1.4
1,168,434	+		EFB2_01118	0.53	-0.8
1,168,434	+		EFB2_01118	0.53	-0.1
1,168,434	+		EFB2_01118	0.53	+1.2
1,168,434	+		EFB2_01118	0.53	-1.0
1,168,434	+		EFB2_01118	0.53	+2.1
1,168,434	+		EFB2_01118	0.53	-1.1
1,168,434	+		EFB2_01118	0.53	+1.2
1,168,434	+		EFB2_01118	0.53	+0.7
1,168,434	+		EFB2_01118	0.53	+0.8
1,168,434	+		EFB2_01118	0.53	+0.4
1,168,434	+		EFB2_01118	0.53	+0.6
1,168,434	+		EFB2_01118	0.53	-3.1
1,168,434	+		EFB2_01118	0.53	+0.5
1,168,434	+		EFB2_01118	0.53	+0.3
1,168,434	+		EFB2_01118	0.53	-0.5
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1,169,451	-		EFB2_01119	0.44	-1.0
1,169,451	-		EFB2_01119	0.44	+0.3
1,169,514	+		EFB2_01119	0.52	+0.3
1,169,514	+		EFB2_01119	0.52	+0.0
1,169,515	-		EFB2_01119	0.52	-0.7
1,169,635	+		EFB2_01119	0.66	+2.6
1,169,635	+		EFB2_01119	0.66	+0.1
1,169,635	+		EFB2_01119	0.66	+1.1
1,169,636	-		EFB2_01119	0.66	-1.6
1,169,636	-		EFB2_01119	0.66	+0.5
1,169,636	-		EFB2_01119	0.66	+1.3
1,169,643	+		EFB2_01119	0.67	+2.5
1,169,643	+		EFB2_01119	0.67	+0.2
1,169,667	-		EFB2_01119	0.70	-1.1
1,169,720	+		EFB2_01119	0.76	-2.1
1,169,720	+		EFB2_01119	0.76	-1.2
1,169,721	-		EFB2_01119	0.76	+2.6
1,169,721	-		EFB2_01119	0.76	-0.2
1,169,721	-		EFB2_01119	0.76	+2.4
1,169,721	-		EFB2_01119	0.76	+0.9
1,169,792	+		EFB2_01119	0.85	+1.0
1,169,793	-		EFB2_01119	0.85	-1.1
1,169,813	+		EFB2_01119	0.87	+1.5
1,169,813	+		EFB2_01119	0.87	+0.3
1,169,813	+		EFB2_01119	0.87	+1.3
1,169,813	+		EFB2_01119	0.87	+1.1
1,169,813	+		EFB2_01119	0.87	+0.3
1,169,814	-		EFB2_01119	0.87	+0.7
1,169,945	-				-0.4