Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03445 and BACOVA_03446 are separated by 25 nucleotides BACOVA_03446 and BACOVA_03447 are separated by 21 nucleotides BACOVA_03447 and BACOVA_03448 are separated by 361 nucleotides
BACOVA_03445: BACOVA_03445 - IPT/TIG domain protein, at 184,950 to 186,332
_03445
BACOVA_03446: BACOVA_03446 - hypothetical protein, at 186,358 to 188,361
_03446
BACOVA_03447: BACOVA_03447 - hypothetical protein, at 188,383 to 188,802
_03447
BACOVA_03448: BACOVA_03448 - hypothetical protein, at 189,164 to 189,289
_03448
Position (kb) 186
187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2 at 185.396 kb on + strand, within BACOVA_03445 at 185.410 kb on - strand, within BACOVA_03445 at 185.446 kb on + strand, within BACOVA_03445 at 185.446 kb on + strand, within BACOVA_03445 at 185.455 kb on - strand, within BACOVA_03445 at 185.517 kb on + strand, within BACOVA_03445 at 185.517 kb on + strand, within BACOVA_03445 at 185.538 kb on - strand, within BACOVA_03445 at 185.643 kb on + strand, within BACOVA_03445 at 185.658 kb on + strand, within BACOVA_03445 at 185.661 kb on - strand, within BACOVA_03445 at 185.661 kb on - strand, within BACOVA_03445 at 185.718 kb on + strand, within BACOVA_03445 at 185.718 kb on + strand, within BACOVA_03445 at 185.718 kb on + strand, within BACOVA_03445 at 185.719 kb on - strand, within BACOVA_03445 at 185.763 kb on + strand, within BACOVA_03445 at 185.815 kb on - strand, within BACOVA_03445 at 185.816 kb on + strand, within BACOVA_03445 at 185.817 kb on - strand, within BACOVA_03445 at 185.826 kb on - strand, within BACOVA_03445 at 185.870 kb on + strand, within BACOVA_03445 at 185.914 kb on + strand, within BACOVA_03445 at 186.101 kb on + strand, within BACOVA_03445 at 186.102 kb on - strand, within BACOVA_03445 at 186.109 kb on - strand, within BACOVA_03445 at 186.148 kb on + strand, within BACOVA_03445 at 186.149 kb on - strand, within BACOVA_03445 at 186.152 kb on + strand, within BACOVA_03445 at 186.152 kb on + strand, within BACOVA_03445 at 186.152 kb on + strand, within BACOVA_03445 at 186.153 kb on - strand, within BACOVA_03445 at 186.153 kb on - strand, within BACOVA_03445 at 186.153 kb on - strand, within BACOVA_03445 at 186.153 kb on - strand, within BACOVA_03445 at 186.153 kb on - strand, within BACOVA_03445 at 186.160 kb on - strand, within BACOVA_03445 at 186.221 kb on + strand at 186.336 kb on - strand at 186.358 kb on - strand at 186.378 kb on - strand at 186.455 kb on + strand at 186.456 kb on - strand at 186.456 kb on - strand at 186.474 kb on + strand at 186.475 kb on - strand at 186.488 kb on + strand at 186.541 kb on - strand at 186.577 kb on - strand, within BACOVA_03446 at 186.579 kb on + strand, within BACOVA_03446 at 186.604 kb on + strand, within BACOVA_03446 at 186.654 kb on - strand, within BACOVA_03446 at 186.680 kb on + strand, within BACOVA_03446 at 186.681 kb on - strand, within BACOVA_03446 at 186.697 kb on - strand, within BACOVA_03446 at 186.733 kb on - strand, within BACOVA_03446 at 186.754 kb on - strand, within BACOVA_03446 at 186.857 kb on + strand, within BACOVA_03446 at 186.864 kb on + strand, within BACOVA_03446 at 186.869 kb on + strand, within BACOVA_03446 at 186.870 kb on - strand, within BACOVA_03446 at 186.874 kb on - strand, within BACOVA_03446 at 186.910 kb on + strand, within BACOVA_03446 at 186.912 kb on + strand, within BACOVA_03446 at 186.912 kb on + strand, within BACOVA_03446 at 186.913 kb on - strand, within BACOVA_03446 at 186.915 kb on + strand, within BACOVA_03446 at 186.916 kb on - strand, within BACOVA_03446 at 186.921 kb on + strand, within BACOVA_03446 at 187.060 kb on + strand, within BACOVA_03446 at 187.061 kb on - strand, within BACOVA_03446 at 187.134 kb on + strand, within BACOVA_03446 at 187.186 kb on + strand, within BACOVA_03446 at 187.215 kb on + strand, within BACOVA_03446 at 187.257 kb on + strand, within BACOVA_03446 at 187.258 kb on - strand, within BACOVA_03446 at 187.258 kb on - strand, within BACOVA_03446 at 187.258 kb on - strand, within BACOVA_03446 at 187.331 kb on - strand, within BACOVA_03446 at 187.359 kb on + strand, within BACOVA_03446 at 187.401 kb on + strand, within BACOVA_03446 at 187.401 kb on + strand, within BACOVA_03446 at 187.401 kb on + strand, within BACOVA_03446 at 187.401 kb on + strand, within BACOVA_03446 at 187.402 kb on - strand, within BACOVA_03446 at 187.402 kb on - strand, within BACOVA_03446 at 187.402 kb on - strand, within BACOVA_03446 at 187.402 kb on - strand, within BACOVA_03446 at 187.541 kb on + strand, within BACOVA_03446 at 187.541 kb on + strand, within BACOVA_03446 at 187.542 kb on - strand, within BACOVA_03446 at 187.542 kb on - strand, within BACOVA_03446 at 187.578 kb on + strand, within BACOVA_03446 at 187.579 kb on - strand, within BACOVA_03446 at 187.584 kb on + strand, within BACOVA_03446 at 187.633 kb on + strand, within BACOVA_03446 at 187.726 kb on + strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.755 kb on + strand, within BACOVA_03446 at 187.755 kb on + strand, within BACOVA_03446 at 187.787 kb on - strand, within BACOVA_03446 at 187.803 kb on + strand, within BACOVA_03446 at 187.803 kb on + strand, within BACOVA_03446 at 187.803 kb on + strand, within BACOVA_03446 at 187.815 kb on + strand, within BACOVA_03446 at 187.816 kb on - strand, within BACOVA_03446 at 187.816 kb on - strand, within BACOVA_03446 at 187.858 kb on + strand, within BACOVA_03446 at 187.858 kb on + strand, within BACOVA_03446 at 187.918 kb on - strand, within BACOVA_03446 at 187.918 kb on - strand, within BACOVA_03446 at 187.937 kb on + strand, within BACOVA_03446 at 187.937 kb on + strand, within BACOVA_03446 at 187.945 kb on + strand, within BACOVA_03446 at 187.946 kb on - strand, within BACOVA_03446 at 187.947 kb on + strand, within BACOVA_03446 at 187.976 kb on + strand, within BACOVA_03446 at 187.987 kb on - strand, within BACOVA_03446 at 188.016 kb on + strand, within BACOVA_03446 at 188.016 kb on + strand, within BACOVA_03446 at 188.022 kb on + strand, within BACOVA_03446 at 188.082 kb on + strand, within BACOVA_03446 at 188.089 kb on - strand, within BACOVA_03446 at 188.118 kb on + strand, within BACOVA_03446 at 188.137 kb on + strand, within BACOVA_03446 at 188.165 kb on - strand at 188.165 kb on - strand at 188.170 kb on - strand at 188.170 kb on - strand at 188.184 kb on + strand at 188.259 kb on + strand at 188.360 kb on - strand at 188.368 kb on - strand at 188.368 kb on - strand at 188.378 kb on + strand at 188.378 kb on + strand at 188.379 kb on - strand at 188.379 kb on - strand at 188.382 kb on - strand at 188.470 kb on + strand, within BACOVA_03447 at 188.471 kb on - strand, within BACOVA_03447 at 188.512 kb on - strand, within BACOVA_03447 at 188.515 kb on + strand, within BACOVA_03447 at 188.527 kb on + strand, within BACOVA_03447 at 188.575 kb on + strand, within BACOVA_03447 at 188.576 kb on - strand, within BACOVA_03447 at 188.577 kb on + strand, within BACOVA_03447 at 188.583 kb on + strand, within BACOVA_03447 at 188.627 kb on - strand, within BACOVA_03447 at 188.661 kb on + strand, within BACOVA_03447 at 188.661 kb on + strand, within BACOVA_03447 at 188.661 kb on + strand, within BACOVA_03447 at 188.662 kb on - strand, within BACOVA_03447 at 188.672 kb on + strand, within BACOVA_03447 at 188.712 kb on + strand, within BACOVA_03447 at 188.714 kb on + strand, within BACOVA_03447 at 188.714 kb on + strand, within BACOVA_03447 at 188.714 kb on + strand, within BACOVA_03447 at 188.715 kb on - strand, within BACOVA_03447 at 188.715 kb on - strand, within BACOVA_03447 at 188.718 kb on + strand, within BACOVA_03447 at 188.718 kb on + strand, within BACOVA_03447 at 188.718 kb on + strand, within BACOVA_03447 at 188.719 kb on - strand, within BACOVA_03447 at 188.739 kb on - strand, within BACOVA_03447 at 188.743 kb on - strand, within BACOVA_03447 at 188.753 kb on + strand, within BACOVA_03447 at 188.754 kb on - strand, within BACOVA_03447 at 188.800 kb on + strand at 188.800 kb on + strand at 188.801 kb on - strand at 188.809 kb on - strand at 188.842 kb on - strand at 188.842 kb on - strand at 188.842 kb on - strand at 188.842 kb on - strand at 188.870 kb on + strand at 188.875 kb on + strand at 188.876 kb on - strand at 188.894 kb on - strand at 188.894 kb on - strand at 188.917 kb on - strand at 188.943 kb on + strand at 188.944 kb on - strand at 188.975 kb on + strand at 188.976 kb on - strand at 188.976 kb on - strand at 188.978 kb on - strand at 188.996 kb on - strand at 189.015 kb on + strand at 189.043 kb on + strand at 189.133 kb on + strand at 189.137 kb on + strand at 189.138 kb on - strand at 189.138 kb on - strand at 189.161 kb on + strand at 189.161 kb on + strand at 189.175 kb on + strand at 189.177 kb on + strand, within BACOVA_03448 at 189.177 kb on + strand, within BACOVA_03448 at 189.181 kb on + strand, within BACOVA_03448 at 189.192 kb on + strand, within BACOVA_03448 at 189.233 kb on - strand, within BACOVA_03448 at 189.276 kb on + strand, within BACOVA_03448 at 189.277 kb on - strand at 189.279 kb on + strand at 189.279 kb on + strand at 189.290 kb on + strand at 189.290 kb on + strand at 189.291 kb on - strand at 189.300 kb on - strand at 189.300 kb on - strand at 189.318 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 185,396 + BACOVA_03445 0.32 +0.8 185,410 - BACOVA_03445 0.33 +1.4 185,446 + BACOVA_03445 0.36 +0.8 185,446 + BACOVA_03445 0.36 -0.2 185,455 - BACOVA_03445 0.37 +0.7 185,517 + BACOVA_03445 0.41 +0.4 185,517 + BACOVA_03445 0.41 +0.2 185,538 - BACOVA_03445 0.43 -0.4 185,643 + BACOVA_03445 0.50 +1.0 185,658 + BACOVA_03445 0.51 +0.7 185,661 - BACOVA_03445 0.51 +0.6 185,661 - BACOVA_03445 0.51 +0.3 185,718 + BACOVA_03445 0.56 -0.1 185,718 + BACOVA_03445 0.56 -0.1 185,718 + BACOVA_03445 0.56 -0.1 185,719 - BACOVA_03445 0.56 -1.0 185,763 + BACOVA_03445 0.59 -0.6 185,815 - BACOVA_03445 0.63 -0.5 185,816 + BACOVA_03445 0.63 +1.1 185,817 - BACOVA_03445 0.63 +0.1 185,826 - BACOVA_03445 0.63 -0.1 185,870 + BACOVA_03445 0.67 -0.3 185,914 + BACOVA_03445 0.70 +1.6 186,101 + BACOVA_03445 0.83 +0.2 186,102 - BACOVA_03445 0.83 -0.2 186,109 - BACOVA_03445 0.84 +0.5 186,148 + BACOVA_03445 0.87 +0.2 186,149 - BACOVA_03445 0.87 +0.0 186,152 + BACOVA_03445 0.87 -2.2 186,152 + BACOVA_03445 0.87 -0.1 186,152 + BACOVA_03445 0.87 +1.3 186,153 - BACOVA_03445 0.87 -0.7 186,153 - BACOVA_03445 0.87 +0.3 186,153 - BACOVA_03445 0.87 -0.7 186,153 - BACOVA_03445 0.87 -0.2 186,153 - BACOVA_03445 0.87 -0.3 186,160 - BACOVA_03445 0.87 +1.5 186,221 + -0.4 186,336 - -1.1 186,358 - -0.6 186,378 - +0.2 186,455 + -0.2 186,456 - -1.0 186,456 - +0.4 186,474 + +0.4 186,475 - -0.0 186,488 + +0.7 186,541 - -0.1 186,577 - BACOVA_03446 0.11 -1.8 186,579 + BACOVA_03446 0.11 -0.6 186,604 + BACOVA_03446 0.12 +0.2 186,654 - BACOVA_03446 0.15 -0.1 186,680 + BACOVA_03446 0.16 +1.2 186,681 - BACOVA_03446 0.16 -1.5 186,697 - BACOVA_03446 0.17 +1.1 186,733 - BACOVA_03446 0.19 -0.9 186,754 - BACOVA_03446 0.20 +0.1 186,857 + BACOVA_03446 0.25 +1.2 186,864 + BACOVA_03446 0.25 -0.0 186,869 + BACOVA_03446 0.25 -0.6 186,870 - BACOVA_03446 0.26 -0.9 186,874 - BACOVA_03446 0.26 +0.4 186,910 + BACOVA_03446 0.28 -0.0 186,912 + BACOVA_03446 0.28 +1.1 186,912 + BACOVA_03446 0.28 -0.4 186,913 - BACOVA_03446 0.28 -0.5 186,915 + BACOVA_03446 0.28 +1.0 186,916 - BACOVA_03446 0.28 +0.3 186,921 + BACOVA_03446 0.28 +0.2 187,060 + BACOVA_03446 0.35 -0.1 187,061 - BACOVA_03446 0.35 +0.4 187,134 + BACOVA_03446 0.39 +0.3 187,186 + BACOVA_03446 0.41 -0.1 187,215 + BACOVA_03446 0.43 -0.4 187,257 + BACOVA_03446 0.45 +0.6 187,258 - BACOVA_03446 0.45 +0.5 187,258 - BACOVA_03446 0.45 +0.1 187,258 - BACOVA_03446 0.45 -0.7 187,331 - BACOVA_03446 0.49 -2.3 187,359 + BACOVA_03446 0.50 +0.2 187,401 + BACOVA_03446 0.52 -0.4 187,401 + BACOVA_03446 0.52 -0.0 187,401 + BACOVA_03446 0.52 -0.7 187,401 + BACOVA_03446 0.52 +1.2 187,402 - BACOVA_03446 0.52 +0.2 187,402 - BACOVA_03446 0.52 +0.4 187,402 - BACOVA_03446 0.52 -0.3 187,402 - BACOVA_03446 0.52 -0.1 187,541 + BACOVA_03446 0.59 +0.8 187,541 + BACOVA_03446 0.59 -1.4 187,542 - BACOVA_03446 0.59 +1.0 187,542 - BACOVA_03446 0.59 +0.6 187,578 + BACOVA_03446 0.61 -0.1 187,579 - BACOVA_03446 0.61 +0.0 187,584 + BACOVA_03446 0.61 -1.6 187,633 + BACOVA_03446 0.64 -0.5 187,726 + BACOVA_03446 0.68 -0.3 187,727 - BACOVA_03446 0.68 -0.5 187,727 - BACOVA_03446 0.68 +1.5 187,727 - BACOVA_03446 0.68 +0.2 187,727 - BACOVA_03446 0.68 +0.9 187,727 - BACOVA_03446 0.68 +0.4 187,755 + BACOVA_03446 0.70 +0.9 187,755 + BACOVA_03446 0.70 +0.2 187,787 - BACOVA_03446 0.71 +1.6 187,803 + BACOVA_03446 0.72 +0.3 187,803 + BACOVA_03446 0.72 -1.2 187,803 + BACOVA_03446 0.72 +0.3 187,815 + BACOVA_03446 0.73 -0.3 187,816 - BACOVA_03446 0.73 +0.5 187,816 - BACOVA_03446 0.73 +0.3 187,858 + BACOVA_03446 0.75 -0.1 187,858 + BACOVA_03446 0.75 +1.1 187,918 - BACOVA_03446 0.78 -0.4 187,918 - BACOVA_03446 0.78 +0.6 187,937 + BACOVA_03446 0.79 -0.1 187,937 + BACOVA_03446 0.79 -1.1 187,945 + BACOVA_03446 0.79 +0.3 187,946 - BACOVA_03446 0.79 -0.3 187,947 + BACOVA_03446 0.79 +0.4 187,976 + BACOVA_03446 0.81 -1.8 187,987 - BACOVA_03446 0.81 +0.6 188,016 + BACOVA_03446 0.83 +0.5 188,016 + BACOVA_03446 0.83 -0.7 188,022 + BACOVA_03446 0.83 -1.1 188,082 + BACOVA_03446 0.86 +0.3 188,089 - BACOVA_03446 0.86 +0.1 188,118 + BACOVA_03446 0.88 +0.3 188,137 + BACOVA_03446 0.89 +0.7 188,165 - +0.4 188,165 - -0.9 188,170 - -1.1 188,170 - +0.0 188,184 + +0.4 188,259 + -1.3 188,360 - -0.0 188,368 - -1.0 188,368 - -0.4 188,378 + +1.1 188,378 + +0.6 188,379 - +0.8 188,379 - +1.0 188,382 - -0.8 188,470 + BACOVA_03447 0.21 +0.0 188,471 - BACOVA_03447 0.21 -0.7 188,512 - BACOVA_03447 0.31 +0.1 188,515 + BACOVA_03447 0.31 -0.1 188,527 + BACOVA_03447 0.34 -0.0 188,575 + BACOVA_03447 0.46 +0.9 188,576 - BACOVA_03447 0.46 -0.7 188,577 + BACOVA_03447 0.46 +0.0 188,583 + BACOVA_03447 0.48 -1.4 188,627 - BACOVA_03447 0.58 -0.8 188,661 + BACOVA_03447 0.66 -0.1 188,661 + BACOVA_03447 0.66 +0.4 188,661 + BACOVA_03447 0.66 -0.0 188,662 - BACOVA_03447 0.66 +0.3 188,672 + BACOVA_03447 0.69 -0.5 188,712 + BACOVA_03447 0.78 -0.4 188,714 + BACOVA_03447 0.79 +0.0 188,714 + BACOVA_03447 0.79 -0.5 188,714 + BACOVA_03447 0.79 +0.1 188,715 - BACOVA_03447 0.79 -0.0 188,715 - BACOVA_03447 0.79 +1.0 188,718 + BACOVA_03447 0.80 +0.4 188,718 + BACOVA_03447 0.80 -0.8 188,718 + BACOVA_03447 0.80 +0.5 188,719 - BACOVA_03447 0.80 -0.6 188,739 - BACOVA_03447 0.85 +0.3 188,743 - BACOVA_03447 0.86 +0.3 188,753 + BACOVA_03447 0.88 -0.5 188,754 - BACOVA_03447 0.88 +0.4 188,800 + -0.7 188,800 + +1.8 188,801 - +0.1 188,809 - +0.5 188,842 - -1.5 188,842 - +0.3 188,842 - -0.4 188,842 - +0.5 188,870 + +0.3 188,875 + +0.3 188,876 - +0.2 188,894 - +0.6 188,894 - -1.5 188,917 - +0.8 188,943 + -0.0 188,944 - -0.8 188,975 + -0.6 188,976 - +0.5 188,976 - +0.2 188,978 - -1.4 188,996 - -1.0 189,015 + +0.9 189,043 + +0.8 189,133 + +0.3 189,137 + +0.0 189,138 - -0.4 189,138 - -0.2 189,161 + -0.0 189,161 + -0.5 189,175 + -0.0 189,177 + BACOVA_03448 0.10 -0.8 189,177 + BACOVA_03448 0.10 +1.3 189,181 + BACOVA_03448 0.13 +1.5 189,192 + BACOVA_03448 0.22 +0.1 189,233 - BACOVA_03448 0.55 -0.6 189,276 + BACOVA_03448 0.89 -0.1 189,277 - -0.3 189,279 + -0.6 189,279 + -1.7 189,290 + -1.4 189,290 + +0.0 189,291 - +0.4 189,300 - +0.6 189,300 - +0.0 189,318 + +0.6
Or see this region's nucleotide sequence