Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03375 and BACOVA_03374 overlap by 8 nucleotides BACOVA_03374 and BACOVA_03376 are separated by 824 nucleotides
BACOVA_03375: BACOVA_03375 - hypothetical protein, at 76,013 to 77,566
_03375
BACOVA_03374: BACOVA_03374 - hypothetical protein, at 77,559 to 77,663
_03374
BACOVA_03376: BACOVA_03376 - hypothetical protein, at 78,488 to 78,595
_03376
Position (kb)
77
78 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 76.602 kb on - strand, within BACOVA_03375 at 76.644 kb on + strand, within BACOVA_03375 at 76.644 kb on + strand, within BACOVA_03375 at 76.645 kb on - strand, within BACOVA_03375 at 76.667 kb on - strand, within BACOVA_03375 at 76.675 kb on - strand, within BACOVA_03375 at 76.678 kb on + strand, within BACOVA_03375 at 76.678 kb on + strand, within BACOVA_03375 at 76.678 kb on + strand, within BACOVA_03375 at 76.678 kb on + strand, within BACOVA_03375 at 76.701 kb on + strand, within BACOVA_03375 at 76.752 kb on + strand, within BACOVA_03375 at 76.752 kb on + strand, within BACOVA_03375 at 76.753 kb on - strand, within BACOVA_03375 at 76.753 kb on - strand, within BACOVA_03375 at 76.755 kb on - strand, within BACOVA_03375 at 76.756 kb on + strand, within BACOVA_03375 at 76.768 kb on + strand, within BACOVA_03375 at 76.769 kb on - strand, within BACOVA_03375 at 76.769 kb on - strand, within BACOVA_03375 at 76.769 kb on - strand, within BACOVA_03375 at 76.791 kb on + strand, within BACOVA_03375 at 76.792 kb on - strand, within BACOVA_03375 at 76.792 kb on - strand, within BACOVA_03375 at 76.811 kb on - strand, within BACOVA_03375 at 76.864 kb on + strand, within BACOVA_03375 at 76.869 kb on - strand, within BACOVA_03375 at 77.010 kb on - strand, within BACOVA_03375 at 77.011 kb on + strand, within BACOVA_03375 at 77.011 kb on + strand, within BACOVA_03375 at 77.011 kb on + strand, within BACOVA_03375 at 77.011 kb on + strand, within BACOVA_03375 at 77.013 kb on + strand, within BACOVA_03375 at 77.014 kb on - strand, within BACOVA_03375 at 77.111 kb on - strand, within BACOVA_03375 at 77.136 kb on - strand, within BACOVA_03375 at 77.136 kb on - strand, within BACOVA_03375 at 77.169 kb on - strand, within BACOVA_03375 at 77.220 kb on + strand, within BACOVA_03375 at 77.221 kb on - strand, within BACOVA_03375 at 77.255 kb on + strand, within BACOVA_03375 at 77.255 kb on + strand, within BACOVA_03375 at 77.258 kb on - strand, within BACOVA_03375 at 77.279 kb on - strand, within BACOVA_03375 at 77.296 kb on + strand, within BACOVA_03375 at 77.310 kb on - strand, within BACOVA_03375 at 77.319 kb on + strand, within BACOVA_03375 at 77.320 kb on - strand, within BACOVA_03375 at 77.388 kb on + strand, within BACOVA_03375 at 77.388 kb on + strand, within BACOVA_03375 at 77.402 kb on - strand, within BACOVA_03375 at 77.441 kb on + strand at 77.448 kb on + strand at 77.456 kb on - strand at 77.476 kb on - strand at 77.499 kb on + strand at 77.501 kb on + strand at 77.501 kb on + strand at 77.502 kb on - strand at 77.502 kb on - strand at 77.506 kb on - strand at 77.537 kb on + strand at 77.543 kb on + strand at 77.566 kb on + strand at 77.567 kb on - strand at 77.567 kb on - strand at 77.569 kb on - strand at 77.603 kb on + strand, within BACOVA_03374 at 77.645 kb on + strand, within BACOVA_03374 at 77.650 kb on - strand, within BACOVA_03374 at 77.650 kb on - strand, within BACOVA_03374 at 77.650 kb on - strand, within BACOVA_03374 at 77.690 kb on - strand at 77.690 kb on - strand at 77.690 kb on - strand at 77.690 kb on - strand at 77.690 kb on - strand at 77.697 kb on - strand at 77.697 kb on - strand at 77.702 kb on - strand at 77.702 kb on - strand at 77.851 kb on - strand at 77.865 kb on + strand at 77.912 kb on - strand at 77.912 kb on - strand at 78.044 kb on + strand at 78.057 kb on - strand at 78.090 kb on + strand at 78.161 kb on + strand at 78.203 kb on + strand at 78.203 kb on + strand at 78.204 kb on - strand at 78.205 kb on + strand at 78.205 kb on + strand at 78.206 kb on - strand at 78.243 kb on - strand at 78.243 kb on - strand at 78.243 kb on - strand at 78.272 kb on + strand at 78.308 kb on - strand at 78.308 kb on - strand at 78.315 kb on - strand at 78.385 kb on - strand at 78.514 kb on + strand, within BACOVA_03376 at 78.518 kb on + strand, within BACOVA_03376 at 78.519 kb on - strand, within BACOVA_03376 at 78.541 kb on - strand, within BACOVA_03376 at 78.568 kb on - strand, within BACOVA_03376 at 78.569 kb on + strand, within BACOVA_03376 at 78.623 kb on + strand at 78.624 kb on - strand at 78.624 kb on - strand at 78.625 kb on + strand at 78.626 kb on - strand at 78.627 kb on + strand at 78.627 kb on + strand at 78.628 kb on - strand at 78.633 kb on + strand at 78.634 kb on - strand at 78.643 kb on - strand at 78.646 kb on + strand at 78.646 kb on + strand at 78.646 kb on + strand at 78.646 kb on + strand at 78.647 kb on - strand at 78.647 kb on - strand at 78.651 kb on + strand at 78.651 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 76,602 - BACOVA_03375 0.38 -0.7 76,644 + BACOVA_03375 0.41 -1.4 76,644 + BACOVA_03375 0.41 -0.0 76,645 - BACOVA_03375 0.41 +0.1 76,667 - BACOVA_03375 0.42 -2.1 76,675 - BACOVA_03375 0.43 -0.7 76,678 + BACOVA_03375 0.43 -0.7 76,678 + BACOVA_03375 0.43 -2.0 76,678 + BACOVA_03375 0.43 -0.7 76,678 + BACOVA_03375 0.43 +0.9 76,701 + BACOVA_03375 0.44 -0.3 76,752 + BACOVA_03375 0.48 +0.3 76,752 + BACOVA_03375 0.48 -2.3 76,753 - BACOVA_03375 0.48 -1.4 76,753 - BACOVA_03375 0.48 +0.4 76,755 - BACOVA_03375 0.48 +0.3 76,756 + BACOVA_03375 0.48 +1.2 76,768 + BACOVA_03375 0.49 -1.0 76,769 - BACOVA_03375 0.49 -1.2 76,769 - BACOVA_03375 0.49 -0.2 76,769 - BACOVA_03375 0.49 +0.6 76,791 + BACOVA_03375 0.50 -0.9 76,792 - BACOVA_03375 0.50 +0.8 76,792 - BACOVA_03375 0.50 +0.4 76,811 - BACOVA_03375 0.51 -0.5 76,864 + BACOVA_03375 0.55 -0.5 76,869 - BACOVA_03375 0.55 +0.5 77,010 - BACOVA_03375 0.64 -0.1 77,011 + BACOVA_03375 0.64 +0.2 77,011 + BACOVA_03375 0.64 -0.5 77,011 + BACOVA_03375 0.64 -0.4 77,011 + BACOVA_03375 0.64 -1.0 77,013 + BACOVA_03375 0.64 -0.4 77,014 - BACOVA_03375 0.64 +0.5 77,111 - BACOVA_03375 0.71 +0.3 77,136 - BACOVA_03375 0.72 -0.2 77,136 - BACOVA_03375 0.72 -0.5 77,169 - BACOVA_03375 0.74 +0.4 77,220 + BACOVA_03375 0.78 -0.5 77,221 - BACOVA_03375 0.78 +0.7 77,255 + BACOVA_03375 0.80 +0.6 77,255 + BACOVA_03375 0.80 +0.5 77,258 - BACOVA_03375 0.80 -2.5 77,279 - BACOVA_03375 0.81 -0.2 77,296 + BACOVA_03375 0.83 -0.3 77,310 - BACOVA_03375 0.83 -0.4 77,319 + BACOVA_03375 0.84 -0.4 77,320 - BACOVA_03375 0.84 +1.3 77,388 + BACOVA_03375 0.88 +0.2 77,388 + BACOVA_03375 0.88 -1.0 77,402 - BACOVA_03375 0.89 +1.0 77,441 + +0.8 77,448 + +0.5 77,456 - +1.4 77,476 - -0.2 77,499 + -0.9 77,501 + +1.2 77,501 + +0.6 77,502 - -0.8 77,502 - +1.4 77,506 - -0.4 77,537 + -0.7 77,543 + -0.6 77,566 + -1.0 77,567 - -0.6 77,567 - +1.2 77,569 - +0.9 77,603 + BACOVA_03374 0.42 +0.1 77,645 + BACOVA_03374 0.82 -0.8 77,650 - BACOVA_03374 0.87 -1.1 77,650 - BACOVA_03374 0.87 -1.4 77,650 - BACOVA_03374 0.87 -1.5 77,690 - -0.5 77,690 - -0.7 77,690 - -1.8 77,690 - -1.1 77,690 - -1.6 77,697 - +0.6 77,697 - -0.4 77,702 - +0.9 77,702 - -0.3 77,851 - -0.3 77,865 + -2.3 77,912 - +0.2 77,912 - +1.3 78,044 + -0.1 78,057 - -2.1 78,090 + +0.2 78,161 + -1.5 78,203 + +1.0 78,203 + +0.6 78,204 - +0.4 78,205 + +0.5 78,205 + +0.1 78,206 - -0.1 78,243 - +2.1 78,243 - -0.0 78,243 - +0.2 78,272 + +0.1 78,308 - -0.3 78,308 - -0.3 78,315 - +0.0 78,385 - -0.4 78,514 + BACOVA_03376 0.24 +0.7 78,518 + BACOVA_03376 0.28 -0.1 78,519 - BACOVA_03376 0.29 -0.5 78,541 - BACOVA_03376 0.49 +0.1 78,568 - BACOVA_03376 0.74 -0.2 78,569 + BACOVA_03376 0.75 +0.7 78,623 + -0.0 78,624 - -0.6 78,624 - +1.9 78,625 + -0.4 78,626 - -0.8 78,627 + +0.2 78,627 + -0.6 78,628 - -0.7 78,633 + +1.0 78,634 - +0.4 78,643 - -0.6 78,646 + +0.8 78,646 + -0.7 78,646 + +0.4 78,646 + +0.4 78,647 - -0.1 78,647 - +0.2 78,651 + -0.6 78,651 + -0.9
Or see this region's nucleotide sequence