Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03374

Experiment: L-Rhamnose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03375 and BACOVA_03374 overlap by 8 nucleotidesBACOVA_03374 and BACOVA_03376 are separated by 824 nucleotides BACOVA_03375: BACOVA_03375 - hypothetical protein, at 76,013 to 77,566 _03375 BACOVA_03374: BACOVA_03374 - hypothetical protein, at 77,559 to 77,663 _03374 BACOVA_03376: BACOVA_03376 - hypothetical protein, at 78,488 to 78,595 _03376 Position (kb) 77 78Strain fitness (log2 ratio) -2 -1 0 1 2at 76.602 kb on - strand, within BACOVA_03375at 76.644 kb on + strand, within BACOVA_03375at 76.644 kb on + strand, within BACOVA_03375at 76.645 kb on - strand, within BACOVA_03375at 76.667 kb on - strand, within BACOVA_03375at 76.675 kb on - strand, within BACOVA_03375at 76.678 kb on + strand, within BACOVA_03375at 76.678 kb on + strand, within BACOVA_03375at 76.678 kb on + strand, within BACOVA_03375at 76.678 kb on + strand, within BACOVA_03375at 76.701 kb on + strand, within BACOVA_03375at 76.752 kb on + strand, within BACOVA_03375at 76.752 kb on + strand, within BACOVA_03375at 76.753 kb on - strand, within BACOVA_03375at 76.753 kb on - strand, within BACOVA_03375at 76.755 kb on - strand, within BACOVA_03375at 76.756 kb on + strand, within BACOVA_03375at 76.768 kb on + strand, within BACOVA_03375at 76.769 kb on - strand, within BACOVA_03375at 76.769 kb on - strand, within BACOVA_03375at 76.769 kb on - strand, within BACOVA_03375at 76.791 kb on + strand, within BACOVA_03375at 76.792 kb on - strand, within BACOVA_03375at 76.792 kb on - strand, within BACOVA_03375at 76.811 kb on - strand, within BACOVA_03375at 76.864 kb on + strand, within BACOVA_03375at 76.869 kb on - strand, within BACOVA_03375at 77.010 kb on - strand, within BACOVA_03375at 77.011 kb on + strand, within BACOVA_03375at 77.011 kb on + strand, within BACOVA_03375at 77.011 kb on + strand, within BACOVA_03375at 77.011 kb on + strand, within BACOVA_03375at 77.013 kb on + strand, within BACOVA_03375at 77.014 kb on - strand, within BACOVA_03375at 77.111 kb on - strand, within BACOVA_03375at 77.136 kb on - strand, within BACOVA_03375at 77.136 kb on - strand, within BACOVA_03375at 77.169 kb on - strand, within BACOVA_03375at 77.220 kb on + strand, within BACOVA_03375at 77.221 kb on - strand, within BACOVA_03375at 77.255 kb on + strand, within BACOVA_03375at 77.255 kb on + strand, within BACOVA_03375at 77.258 kb on - strand, within BACOVA_03375at 77.279 kb on - strand, within BACOVA_03375at 77.296 kb on + strand, within BACOVA_03375at 77.310 kb on - strand, within BACOVA_03375at 77.319 kb on + strand, within BACOVA_03375at 77.320 kb on - strand, within BACOVA_03375at 77.388 kb on + strand, within BACOVA_03375at 77.388 kb on + strand, within BACOVA_03375at 77.402 kb on - strand, within BACOVA_03375at 77.441 kb on + strandat 77.448 kb on + strandat 77.456 kb on - strandat 77.476 kb on - strandat 77.499 kb on + strandat 77.501 kb on + strandat 77.501 kb on + strandat 77.502 kb on - strandat 77.502 kb on - strandat 77.506 kb on - strandat 77.537 kb on + strandat 77.543 kb on + strandat 77.566 kb on + strandat 77.567 kb on - strandat 77.567 kb on - strandat 77.569 kb on - strandat 77.603 kb on + strand, within BACOVA_03374at 77.645 kb on + strand, within BACOVA_03374at 77.650 kb on - strand, within BACOVA_03374at 77.650 kb on - strand, within BACOVA_03374at 77.650 kb on - strand, within BACOVA_03374at 77.690 kb on - strandat 77.690 kb on - strandat 77.690 kb on - strandat 77.690 kb on - strandat 77.690 kb on - strandat 77.697 kb on - strandat 77.697 kb on - strandat 77.702 kb on - strandat 77.702 kb on - strandat 77.851 kb on - strandat 77.865 kb on + strandat 77.912 kb on - strandat 77.912 kb on - strandat 78.044 kb on + strandat 78.057 kb on - strandat 78.090 kb on + strandat 78.161 kb on + strandat 78.203 kb on + strandat 78.203 kb on + strandat 78.204 kb on - strandat 78.205 kb on + strandat 78.205 kb on + strandat 78.206 kb on - strandat 78.243 kb on - strandat 78.243 kb on - strandat 78.243 kb on - strandat 78.272 kb on + strandat 78.308 kb on - strandat 78.308 kb on - strandat 78.315 kb on - strandat 78.385 kb on - strandat 78.514 kb on + strand, within BACOVA_03376at 78.518 kb on + strand, within BACOVA_03376at 78.519 kb on - strand, within BACOVA_03376at 78.541 kb on - strand, within BACOVA_03376at 78.568 kb on - strand, within BACOVA_03376at 78.569 kb on + strand, within BACOVA_03376at 78.623 kb on + strandat 78.624 kb on - strandat 78.624 kb on - strandat 78.625 kb on + strandat 78.626 kb on - strandat 78.627 kb on + strandat 78.627 kb on + strandat 78.628 kb on - strandat 78.633 kb on + strandat 78.634 kb on - strandat 78.643 kb on - strandat 78.646 kb on + strandat 78.646 kb on + strandat 78.646 kb on + strandat 78.646 kb on + strandat 78.647 kb on - strandat 78.647 kb on - strandat 78.651 kb on + strandat 78.651 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C)
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76,602 - BACOVA_03375 0.38 -0.7
76,644 + BACOVA_03375 0.41 -1.4
76,644 + BACOVA_03375 0.41 -0.0
76,645 - BACOVA_03375 0.41 +0.1
76,667 - BACOVA_03375 0.42 -2.1
76,675 - BACOVA_03375 0.43 -0.7
76,678 + BACOVA_03375 0.43 -0.7
76,678 + BACOVA_03375 0.43 -2.0
76,678 + BACOVA_03375 0.43 -0.7
76,678 + BACOVA_03375 0.43 +0.9
76,701 + BACOVA_03375 0.44 -0.3
76,752 + BACOVA_03375 0.48 +0.3
76,752 + BACOVA_03375 0.48 -2.3
76,753 - BACOVA_03375 0.48 -1.4
76,753 - BACOVA_03375 0.48 +0.4
76,755 - BACOVA_03375 0.48 +0.3
76,756 + BACOVA_03375 0.48 +1.2
76,768 + BACOVA_03375 0.49 -1.0
76,769 - BACOVA_03375 0.49 -1.2
76,769 - BACOVA_03375 0.49 -0.2
76,769 - BACOVA_03375 0.49 +0.6
76,791 + BACOVA_03375 0.50 -0.9
76,792 - BACOVA_03375 0.50 +0.8
76,792 - BACOVA_03375 0.50 +0.4
76,811 - BACOVA_03375 0.51 -0.5
76,864 + BACOVA_03375 0.55 -0.5
76,869 - BACOVA_03375 0.55 +0.5
77,010 - BACOVA_03375 0.64 -0.1
77,011 + BACOVA_03375 0.64 +0.2
77,011 + BACOVA_03375 0.64 -0.5
77,011 + BACOVA_03375 0.64 -0.4
77,011 + BACOVA_03375 0.64 -1.0
77,013 + BACOVA_03375 0.64 -0.4
77,014 - BACOVA_03375 0.64 +0.5
77,111 - BACOVA_03375 0.71 +0.3
77,136 - BACOVA_03375 0.72 -0.2
77,136 - BACOVA_03375 0.72 -0.5
77,169 - BACOVA_03375 0.74 +0.4
77,220 + BACOVA_03375 0.78 -0.5
77,221 - BACOVA_03375 0.78 +0.7
77,255 + BACOVA_03375 0.80 +0.6
77,255 + BACOVA_03375 0.80 +0.5
77,258 - BACOVA_03375 0.80 -2.5
77,279 - BACOVA_03375 0.81 -0.2
77,296 + BACOVA_03375 0.83 -0.3
77,310 - BACOVA_03375 0.83 -0.4
77,319 + BACOVA_03375 0.84 -0.4
77,320 - BACOVA_03375 0.84 +1.3
77,388 + BACOVA_03375 0.88 +0.2
77,388 + BACOVA_03375 0.88 -1.0
77,402 - BACOVA_03375 0.89 +1.0
77,441 + +0.8
77,448 + +0.5
77,456 - +1.4
77,476 - -0.2
77,499 + -0.9
77,501 + +1.2
77,501 + +0.6
77,502 - -0.8
77,502 - +1.4
77,506 - -0.4
77,537 + -0.7
77,543 + -0.6
77,566 + -1.0
77,567 - -0.6
77,567 - +1.2
77,569 - +0.9
77,603 + BACOVA_03374 0.42 +0.1
77,645 + BACOVA_03374 0.82 -0.8
77,650 - BACOVA_03374 0.87 -1.1
77,650 - BACOVA_03374 0.87 -1.4
77,650 - BACOVA_03374 0.87 -1.5
77,690 - -0.5
77,690 - -0.7
77,690 - -1.8
77,690 - -1.1
77,690 - -1.6
77,697 - +0.6
77,697 - -0.4
77,702 - +0.9
77,702 - -0.3
77,851 - -0.3
77,865 + -2.3
77,912 - +0.2
77,912 - +1.3
78,044 + -0.1
78,057 - -2.1
78,090 + +0.2
78,161 + -1.5
78,203 + +1.0
78,203 + +0.6
78,204 - +0.4
78,205 + +0.5
78,205 + +0.1
78,206 - -0.1
78,243 - +2.1
78,243 - -0.0
78,243 - +0.2
78,272 + +0.1
78,308 - -0.3
78,308 - -0.3
78,315 - +0.0
78,385 - -0.4
78,514 + BACOVA_03376 0.24 +0.7
78,518 + BACOVA_03376 0.28 -0.1
78,519 - BACOVA_03376 0.29 -0.5
78,541 - BACOVA_03376 0.49 +0.1
78,568 - BACOVA_03376 0.74 -0.2
78,569 + BACOVA_03376 0.75 +0.7
78,623 + -0.0
78,624 - -0.6
78,624 - +1.9
78,625 + -0.4
78,626 - -0.8
78,627 + +0.2
78,627 + -0.6
78,628 - -0.7
78,633 + +1.0
78,634 - +0.4
78,643 - -0.6
78,646 + +0.8
78,646 + -0.7
78,646 + +0.4
78,646 + +0.4
78,647 - -0.1
78,647 - +0.2
78,651 + -0.6
78,651 + -0.9

Or see this region's nucleotide sequence