Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03219 and BACOVA_03220 are separated by 42 nucleotides BACOVA_03220 and BACOVA_03222 are separated by 123 nucleotides
BACOVA_03219: BACOVA_03219 - VirE N-terminal domain protein, at 306,018 to 307,919
_03219
BACOVA_03220: BACOVA_03220 - hypothetical protein, at 307,962 to 308,825
_03220
BACOVA_03222: BACOVA_03222 - hypothetical protein, at 308,949 to 310,070
_03222
Position (kb) 307
308
309 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 306.973 kb on + strand, within BACOVA_03219 at 306.974 kb on - strand, within BACOVA_03219 at 307.032 kb on + strand, within BACOVA_03219 at 307.032 kb on + strand, within BACOVA_03219 at 307.097 kb on + strand, within BACOVA_03219 at 307.166 kb on + strand, within BACOVA_03219 at 307.166 kb on + strand, within BACOVA_03219 at 307.184 kb on + strand, within BACOVA_03219 at 307.185 kb on - strand, within BACOVA_03219 at 307.259 kb on - strand, within BACOVA_03219 at 307.266 kb on + strand, within BACOVA_03219 at 307.266 kb on + strand, within BACOVA_03219 at 307.267 kb on - strand, within BACOVA_03219 at 307.270 kb on - strand, within BACOVA_03219 at 307.270 kb on - strand, within BACOVA_03219 at 307.272 kb on - strand, within BACOVA_03219 at 307.315 kb on - strand, within BACOVA_03219 at 307.340 kb on + strand, within BACOVA_03219 at 307.341 kb on - strand, within BACOVA_03219 at 307.391 kb on + strand, within BACOVA_03219 at 307.392 kb on - strand, within BACOVA_03219 at 307.458 kb on + strand, within BACOVA_03219 at 307.533 kb on - strand, within BACOVA_03219 at 307.536 kb on + strand, within BACOVA_03219 at 307.537 kb on - strand, within BACOVA_03219 at 307.537 kb on - strand, within BACOVA_03219 at 307.551 kb on - strand, within BACOVA_03219 at 307.551 kb on - strand, within BACOVA_03219 at 307.552 kb on + strand, within BACOVA_03219 at 307.552 kb on + strand, within BACOVA_03219 at 307.553 kb on - strand, within BACOVA_03219 at 307.576 kb on - strand, within BACOVA_03219 at 307.709 kb on + strand, within BACOVA_03219 at 307.720 kb on - strand, within BACOVA_03219 at 307.720 kb on - strand, within BACOVA_03219 at 307.724 kb on + strand, within BACOVA_03219 at 307.770 kb on - strand at 307.883 kb on + strand at 307.884 kb on - strand at 307.884 kb on - strand at 307.888 kb on - strand at 307.888 kb on - strand at 307.891 kb on - strand at 307.901 kb on - strand at 307.913 kb on - strand at 307.950 kb on - strand at 307.952 kb on - strand at 307.953 kb on + strand at 307.955 kb on + strand at 307.956 kb on - strand at 307.956 kb on - strand at 307.962 kb on - strand at 307.962 kb on - strand at 307.982 kb on - strand at 308.069 kb on - strand, within BACOVA_03220 at 308.072 kb on - strand, within BACOVA_03220 at 308.194 kb on - strand, within BACOVA_03220 at 308.196 kb on - strand, within BACOVA_03220 at 308.196 kb on - strand, within BACOVA_03220 at 308.210 kb on + strand, within BACOVA_03220 at 308.234 kb on - strand, within BACOVA_03220 at 308.244 kb on - strand, within BACOVA_03220 at 308.244 kb on - strand, within BACOVA_03220 at 308.356 kb on - strand, within BACOVA_03220 at 308.388 kb on - strand, within BACOVA_03220 at 308.414 kb on - strand, within BACOVA_03220 at 308.414 kb on - strand, within BACOVA_03220 at 308.426 kb on - strand, within BACOVA_03220 at 308.488 kb on + strand, within BACOVA_03220 at 308.488 kb on + strand, within BACOVA_03220 at 308.489 kb on - strand, within BACOVA_03220 at 308.526 kb on + strand, within BACOVA_03220 at 308.527 kb on - strand, within BACOVA_03220 at 308.529 kb on - strand, within BACOVA_03220 at 308.570 kb on + strand, within BACOVA_03220 at 308.570 kb on + strand, within BACOVA_03220 at 308.597 kb on + strand, within BACOVA_03220 at 308.728 kb on + strand, within BACOVA_03220 at 308.729 kb on - strand, within BACOVA_03220 at 308.729 kb on - strand, within BACOVA_03220 at 308.741 kb on + strand at 308.741 kb on + strand at 308.741 kb on + strand at 308.742 kb on - strand at 308.742 kb on - strand at 308.743 kb on + strand at 308.753 kb on + strand at 308.832 kb on - strand at 308.832 kb on - strand at 308.836 kb on + strand at 308.837 kb on - strand at 308.837 kb on - strand at 308.837 kb on - strand at 308.837 kb on - strand at 308.840 kb on + strand at 308.840 kb on + strand at 308.841 kb on - strand at 308.859 kb on + strand at 308.859 kb on + strand at 308.860 kb on - strand at 308.868 kb on + strand at 308.868 kb on + strand at 308.884 kb on + strand at 308.914 kb on - strand at 308.943 kb on - strand at 308.947 kb on + strand at 308.948 kb on - strand at 308.948 kb on - strand at 308.966 kb on - strand at 308.996 kb on - strand at 309.003 kb on + strand at 309.066 kb on + strand, within BACOVA_03222 at 309.066 kb on + strand, within BACOVA_03222 at 309.158 kb on - strand, within BACOVA_03222 at 309.168 kb on - strand, within BACOVA_03222 at 309.178 kb on - strand, within BACOVA_03222 at 309.188 kb on + strand, within BACOVA_03222 at 309.209 kb on - strand, within BACOVA_03222 at 309.218 kb on + strand, within BACOVA_03222 at 309.294 kb on - strand, within BACOVA_03222 at 309.377 kb on - strand, within BACOVA_03222 at 309.377 kb on - strand, within BACOVA_03222 at 309.377 kb on - strand, within BACOVA_03222 at 309.434 kb on - strand, within BACOVA_03222 at 309.434 kb on - strand, within BACOVA_03222 at 309.545 kb on + strand, within BACOVA_03222 at 309.546 kb on - strand, within BACOVA_03222 at 309.571 kb on - strand, within BACOVA_03222 at 309.612 kb on - strand, within BACOVA_03222 at 309.645 kb on + strand, within BACOVA_03222 at 309.645 kb on + strand, within BACOVA_03222 at 309.646 kb on - strand, within BACOVA_03222 at 309.646 kb on - strand, within BACOVA_03222 at 309.646 kb on - strand, within BACOVA_03222 at 309.646 kb on - strand, within BACOVA_03222 at 309.648 kb on + strand, within BACOVA_03222 at 309.648 kb on + strand, within BACOVA_03222 at 309.648 kb on + strand, within BACOVA_03222 at 309.692 kb on - strand, within BACOVA_03222 at 309.694 kb on + strand, within BACOVA_03222 at 309.705 kb on + strand, within BACOVA_03222 at 309.705 kb on + strand, within BACOVA_03222 at 309.705 kb on + strand, within BACOVA_03222 at 309.705 kb on + strand, within BACOVA_03222 at 309.706 kb on - strand, within BACOVA_03222 at 309.706 kb on - strand, within BACOVA_03222 at 309.707 kb on + strand, within BACOVA_03222 at 309.707 kb on + strand, within BACOVA_03222 at 309.709 kb on + strand, within BACOVA_03222 at 309.709 kb on + strand, within BACOVA_03222 at 309.710 kb on - strand, within BACOVA_03222 at 309.713 kb on + strand, within BACOVA_03222 at 309.714 kb on - strand, within BACOVA_03222 at 309.747 kb on + strand, within BACOVA_03222 at 309.810 kb on + strand, within BACOVA_03222 at 309.811 kb on - strand, within BACOVA_03222 at 309.811 kb on - strand, within BACOVA_03222 at 309.815 kb on + strand, within BACOVA_03222
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 306,973 + BACOVA_03219 0.50 +0.1 306,974 - BACOVA_03219 0.50 +1.1 307,032 + BACOVA_03219 0.53 -1.8 307,032 + BACOVA_03219 0.53 +0.3 307,097 + BACOVA_03219 0.57 +0.2 307,166 + BACOVA_03219 0.60 +0.1 307,166 + BACOVA_03219 0.60 +0.2 307,184 + BACOVA_03219 0.61 -1.9 307,185 - BACOVA_03219 0.61 +1.1 307,259 - BACOVA_03219 0.65 -0.1 307,266 + BACOVA_03219 0.66 -0.3 307,266 + BACOVA_03219 0.66 -0.5 307,267 - BACOVA_03219 0.66 -0.7 307,270 - BACOVA_03219 0.66 -1.2 307,270 - BACOVA_03219 0.66 -0.3 307,272 - BACOVA_03219 0.66 -3.3 307,315 - BACOVA_03219 0.68 +0.2 307,340 + BACOVA_03219 0.70 +0.1 307,341 - BACOVA_03219 0.70 -0.3 307,391 + BACOVA_03219 0.72 -0.2 307,392 - BACOVA_03219 0.72 +2.3 307,458 + BACOVA_03219 0.76 -1.0 307,533 - BACOVA_03219 0.80 +1.1 307,536 + BACOVA_03219 0.80 +0.6 307,537 - BACOVA_03219 0.80 -0.5 307,537 - BACOVA_03219 0.80 +1.3 307,551 - BACOVA_03219 0.81 -0.3 307,551 - BACOVA_03219 0.81 -0.4 307,552 + BACOVA_03219 0.81 -0.1 307,552 + BACOVA_03219 0.81 -1.1 307,553 - BACOVA_03219 0.81 -0.1 307,576 - BACOVA_03219 0.82 -0.1 307,709 + BACOVA_03219 0.89 +0.2 307,720 - BACOVA_03219 0.89 -0.7 307,720 - BACOVA_03219 0.89 -0.1 307,724 + BACOVA_03219 0.90 -0.6 307,770 - +1.6 307,883 + -0.3 307,884 - -0.8 307,884 - +0.2 307,888 - -0.0 307,888 - -0.2 307,891 - -0.9 307,901 - -0.6 307,913 - -0.3 307,950 - +1.1 307,952 - +0.2 307,953 + -1.5 307,955 + +0.1 307,956 - +0.1 307,956 - -0.1 307,962 - -0.7 307,962 - +0.1 307,982 - -0.8 308,069 - BACOVA_03220 0.12 -0.7 308,072 - BACOVA_03220 0.13 -2.4 308,194 - BACOVA_03220 0.27 -2.3 308,196 - BACOVA_03220 0.27 -0.4 308,196 - BACOVA_03220 0.27 -0.8 308,210 + BACOVA_03220 0.29 +0.2 308,234 - BACOVA_03220 0.31 +1.1 308,244 - BACOVA_03220 0.33 -1.3 308,244 - BACOVA_03220 0.33 -0.5 308,356 - BACOVA_03220 0.46 -0.3 308,388 - BACOVA_03220 0.49 -0.2 308,414 - BACOVA_03220 0.52 -0.1 308,414 - BACOVA_03220 0.52 +2.4 308,426 - BACOVA_03220 0.54 -0.6 308,488 + BACOVA_03220 0.61 -1.3 308,488 + BACOVA_03220 0.61 +0.5 308,489 - BACOVA_03220 0.61 -0.1 308,526 + BACOVA_03220 0.65 +0.3 308,527 - BACOVA_03220 0.65 -1.2 308,529 - BACOVA_03220 0.66 +0.2 308,570 + BACOVA_03220 0.70 +0.6 308,570 + BACOVA_03220 0.70 -0.1 308,597 + BACOVA_03220 0.73 +0.2 308,728 + BACOVA_03220 0.89 -0.7 308,729 - BACOVA_03220 0.89 +0.4 308,729 - BACOVA_03220 0.89 -0.0 308,741 + -0.4 308,741 + -0.7 308,741 + +0.7 308,742 - -1.0 308,742 - +0.1 308,743 + -0.8 308,753 + -1.8 308,832 - +0.1 308,832 - -1.0 308,836 + -0.6 308,837 - +1.1 308,837 - -1.3 308,837 - -1.4 308,837 - +0.4 308,840 + +0.6 308,840 + +0.1 308,841 - -0.3 308,859 + +0.4 308,859 + -1.2 308,860 - +0.3 308,868 + +0.4 308,868 + +0.3 308,884 + +1.1 308,914 - +0.3 308,943 - -1.1 308,947 + +1.7 308,948 - -4.6 308,948 - -0.0 308,966 - -0.7 308,996 - +0.1 309,003 + -0.2 309,066 + BACOVA_03222 0.10 +0.8 309,066 + BACOVA_03222 0.10 -0.5 309,158 - BACOVA_03222 0.19 -1.6 309,168 - BACOVA_03222 0.20 -0.2 309,178 - BACOVA_03222 0.20 +0.7 309,188 + BACOVA_03222 0.21 +0.0 309,209 - BACOVA_03222 0.23 -0.5 309,218 + BACOVA_03222 0.24 -1.0 309,294 - BACOVA_03222 0.31 -0.5 309,377 - BACOVA_03222 0.38 -0.6 309,377 - BACOVA_03222 0.38 +1.6 309,377 - BACOVA_03222 0.38 -0.5 309,434 - BACOVA_03222 0.43 +1.7 309,434 - BACOVA_03222 0.43 +0.1 309,545 + BACOVA_03222 0.53 +0.1 309,546 - BACOVA_03222 0.53 -0.9 309,571 - BACOVA_03222 0.55 -0.4 309,612 - BACOVA_03222 0.59 +0.1 309,645 + BACOVA_03222 0.62 +0.9 309,645 + BACOVA_03222 0.62 -0.8 309,646 - BACOVA_03222 0.62 +0.1 309,646 - BACOVA_03222 0.62 -1.1 309,646 - BACOVA_03222 0.62 +0.5 309,646 - BACOVA_03222 0.62 +0.5 309,648 + BACOVA_03222 0.62 -0.2 309,648 + BACOVA_03222 0.62 -0.2 309,648 + BACOVA_03222 0.62 +0.5 309,692 - BACOVA_03222 0.66 -0.2 309,694 + BACOVA_03222 0.66 +0.2 309,705 + BACOVA_03222 0.67 -0.1 309,705 + BACOVA_03222 0.67 +0.5 309,705 + BACOVA_03222 0.67 +0.5 309,705 + BACOVA_03222 0.67 +0.7 309,706 - BACOVA_03222 0.67 +0.2 309,706 - BACOVA_03222 0.67 +0.1 309,707 + BACOVA_03222 0.68 -0.8 309,707 + BACOVA_03222 0.68 +1.2 309,709 + BACOVA_03222 0.68 -0.0 309,709 + BACOVA_03222 0.68 -0.2 309,710 - BACOVA_03222 0.68 -1.6 309,713 + BACOVA_03222 0.68 -1.1 309,714 - BACOVA_03222 0.68 -0.6 309,747 + BACOVA_03222 0.71 -0.0 309,810 + BACOVA_03222 0.77 -0.4 309,811 - BACOVA_03222 0.77 +0.6 309,811 - BACOVA_03222 0.77 +0.3 309,815 + BACOVA_03222 0.77 +0.8
Or see this region's nucleotide sequence