Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03212

Experiment: L-Rhamnose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03211 and BACOVA_03212 are separated by 81 nucleotidesBACOVA_03212 and BACOVA_03213 are separated by 13 nucleotidesBACOVA_03213 and BACOVA_03214 are separated by 29 nucleotides BACOVA_03211: BACOVA_03211 - hypothetical protein, at 300,650 to 301,702 _03211 BACOVA_03212: BACOVA_03212 - hypothetical protein, at 301,784 to 302,293 _03212 BACOVA_03213: BACOVA_03213 - hypothetical protein, at 302,307 to 302,672 _03213 BACOVA_03214: BACOVA_03214 - hypothetical protein, at 302,702 to 304,012 _03214 Position (kb) 301 302 303Strain fitness (log2 ratio) -3 -2 -1 0 1at 300.818 kb on + strand, within BACOVA_03211at 300.819 kb on - strand, within BACOVA_03211at 300.821 kb on + strand, within BACOVA_03211at 300.822 kb on - strand, within BACOVA_03211at 300.990 kb on - strand, within BACOVA_03211at 300.990 kb on - strand, within BACOVA_03211at 300.991 kb on + strand, within BACOVA_03211at 300.991 kb on + strand, within BACOVA_03211at 300.992 kb on - strand, within BACOVA_03211at 300.992 kb on - strand, within BACOVA_03211at 300.992 kb on - strand, within BACOVA_03211at 301.012 kb on + strand, within BACOVA_03211at 301.012 kb on + strand, within BACOVA_03211at 301.013 kb on - strand, within BACOVA_03211at 301.013 kb on - strand, within BACOVA_03211at 301.013 kb on - strand, within BACOVA_03211at 301.057 kb on + strand, within BACOVA_03211at 301.062 kb on - strand, within BACOVA_03211at 301.063 kb on + strand, within BACOVA_03211at 301.063 kb on + strand, within BACOVA_03211at 301.064 kb on - strand, within BACOVA_03211at 301.066 kb on + strand, within BACOVA_03211at 301.094 kb on + strand, within BACOVA_03211at 301.095 kb on - strand, within BACOVA_03211at 301.097 kb on - strand, within BACOVA_03211at 301.117 kb on - strand, within BACOVA_03211at 301.117 kb on - strand, within BACOVA_03211at 301.120 kb on + strand, within BACOVA_03211at 301.120 kb on + strand, within BACOVA_03211at 301.120 kb on + strand, within BACOVA_03211at 301.120 kb on + strand, within BACOVA_03211at 301.121 kb on - strand, within BACOVA_03211at 301.121 kb on - strand, within BACOVA_03211at 301.238 kb on + strand, within BACOVA_03211at 301.238 kb on + strand, within BACOVA_03211at 301.238 kb on + strand, within BACOVA_03211at 301.239 kb on - strand, within BACOVA_03211at 301.241 kb on + strand, within BACOVA_03211at 301.241 kb on + strand, within BACOVA_03211at 301.243 kb on + strand, within BACOVA_03211at 301.244 kb on - strand, within BACOVA_03211at 301.274 kb on + strand, within BACOVA_03211at 301.275 kb on - strand, within BACOVA_03211at 301.281 kb on - strand, within BACOVA_03211at 301.285 kb on + strand, within BACOVA_03211at 301.358 kb on + strand, within BACOVA_03211at 301.359 kb on - strand, within BACOVA_03211at 301.359 kb on - strand, within BACOVA_03211at 301.359 kb on - strand, within BACOVA_03211at 301.364 kb on + strand, within BACOVA_03211at 301.365 kb on - strand, within BACOVA_03211at 301.372 kb on + strand, within BACOVA_03211at 301.372 kb on + strand, within BACOVA_03211at 301.372 kb on + strand, within BACOVA_03211at 301.373 kb on - strand, within BACOVA_03211at 301.376 kb on - strand, within BACOVA_03211at 301.415 kb on - strand, within BACOVA_03211at 301.417 kb on + strand, within BACOVA_03211at 301.426 kb on - strand, within BACOVA_03211at 301.426 kb on - strand, within BACOVA_03211at 301.449 kb on - strand, within BACOVA_03211at 301.451 kb on + strand, within BACOVA_03211at 301.486 kb on + strand, within BACOVA_03211at 301.557 kb on - strand, within BACOVA_03211at 301.557 kb on - strand, within BACOVA_03211at 301.626 kb on - strandat 301.656 kb on + strandat 301.684 kb on + strandat 301.685 kb on - strandat 301.689 kb on - strandat 301.701 kb on - strandat 301.721 kb on + strandat 301.743 kb on + strandat 301.743 kb on + strandat 301.743 kb on + strandat 301.744 kb on - strandat 301.774 kb on - strandat 301.789 kb on + strandat 301.819 kb on - strandat 301.861 kb on + strand, within BACOVA_03212at 301.862 kb on - strand, within BACOVA_03212at 301.862 kb on - strand, within BACOVA_03212at 301.873 kb on + strand, within BACOVA_03212at 301.897 kb on + strand, within BACOVA_03212at 301.898 kb on - strand, within BACOVA_03212at 301.898 kb on - strand, within BACOVA_03212at 301.903 kb on + strand, within BACOVA_03212at 301.927 kb on + strand, within BACOVA_03212at 302.028 kb on + strand, within BACOVA_03212at 302.028 kb on + strand, within BACOVA_03212at 302.037 kb on + strand, within BACOVA_03212at 302.065 kb on + strand, within BACOVA_03212at 302.079 kb on + strand, within BACOVA_03212at 302.083 kb on + strand, within BACOVA_03212at 302.084 kb on - strand, within BACOVA_03212at 302.084 kb on - strand, within BACOVA_03212at 302.084 kb on - strand, within BACOVA_03212at 302.084 kb on - strand, within BACOVA_03212at 302.153 kb on + strand, within BACOVA_03212at 302.162 kb on - strand, within BACOVA_03212at 302.162 kb on - strand, within BACOVA_03212at 302.178 kb on + strand, within BACOVA_03212at 302.181 kb on + strand, within BACOVA_03212at 302.182 kb on - strand, within BACOVA_03212at 302.182 kb on - strand, within BACOVA_03212at 302.185 kb on + strand, within BACOVA_03212at 302.185 kb on + strand, within BACOVA_03212at 302.186 kb on - strand, within BACOVA_03212at 302.275 kb on - strandat 302.281 kb on - strandat 302.281 kb on - strandat 302.346 kb on + strand, within BACOVA_03213at 302.347 kb on - strand, within BACOVA_03213at 302.347 kb on - strand, within BACOVA_03213at 302.351 kb on + strand, within BACOVA_03213at 302.351 kb on + strand, within BACOVA_03213at 302.352 kb on - strand, within BACOVA_03213at 302.357 kb on - strand, within BACOVA_03213at 302.368 kb on - strand, within BACOVA_03213at 302.368 kb on - strand, within BACOVA_03213at 302.395 kb on - strand, within BACOVA_03213at 302.411 kb on - strand, within BACOVA_03213at 302.462 kb on + strand, within BACOVA_03213at 302.464 kb on + strand, within BACOVA_03213at 302.464 kb on + strand, within BACOVA_03213at 302.563 kb on + strand, within BACOVA_03213at 302.564 kb on - strand, within BACOVA_03213at 302.585 kb on + strand, within BACOVA_03213at 302.587 kb on + strand, within BACOVA_03213at 302.588 kb on - strand, within BACOVA_03213at 302.647 kb on + strandat 302.647 kb on + strandat 302.647 kb on + strandat 302.647 kb on + strandat 302.648 kb on - strandat 302.648 kb on - strandat 302.654 kb on + strandat 302.692 kb on - strandat 302.692 kb on - strandat 302.695 kb on + strandat 302.696 kb on - strandat 302.698 kb on + strandat 302.731 kb on + strandat 302.732 kb on - strandat 302.750 kb on + strandat 302.757 kb on + strandat 302.787 kb on + strandat 302.788 kb on - strandat 302.788 kb on - strandat 302.790 kb on + strandat 302.805 kb on - strandat 302.894 kb on - strand, within BACOVA_03214at 302.894 kb on - strand, within BACOVA_03214at 302.894 kb on - strand, within BACOVA_03214at 302.904 kb on - strand, within BACOVA_03214at 302.905 kb on + strand, within BACOVA_03214at 302.905 kb on + strand, within BACOVA_03214at 302.911 kb on - strand, within BACOVA_03214at 302.921 kb on - strand, within BACOVA_03214at 302.964 kb on + strand, within BACOVA_03214at 302.972 kb on - strand, within BACOVA_03214at 302.973 kb on + strand, within BACOVA_03214at 303.004 kb on + strand, within BACOVA_03214at 303.049 kb on + strand, within BACOVA_03214at 303.049 kb on + strand, within BACOVA_03214at 303.050 kb on - strand, within BACOVA_03214at 303.067 kb on - strand, within BACOVA_03214at 303.089 kb on + strand, within BACOVA_03214at 303.120 kb on - strand, within BACOVA_03214at 303.175 kb on - strand, within BACOVA_03214at 303.190 kb on + strand, within BACOVA_03214at 303.210 kb on - strand, within BACOVA_03214at 303.255 kb on - strand, within BACOVA_03214at 303.281 kb on + strand, within BACOVA_03214at 303.291 kb on - strand, within BACOVA_03214

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C)
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300,818 + BACOVA_03211 0.16 +0.1
300,819 - BACOVA_03211 0.16 +0.0
300,821 + BACOVA_03211 0.16 +1.2
300,822 - BACOVA_03211 0.16 -0.1
300,990 - BACOVA_03211 0.32 -1.4
300,990 - BACOVA_03211 0.32 +0.7
300,991 + BACOVA_03211 0.32 +1.0
300,991 + BACOVA_03211 0.32 -0.9
300,992 - BACOVA_03211 0.32 -0.1
300,992 - BACOVA_03211 0.32 -0.0
300,992 - BACOVA_03211 0.32 +0.2
301,012 + BACOVA_03211 0.34 +0.5
301,012 + BACOVA_03211 0.34 +0.3
301,013 - BACOVA_03211 0.34 -0.0
301,013 - BACOVA_03211 0.34 -1.8
301,013 - BACOVA_03211 0.34 +0.5
301,057 + BACOVA_03211 0.39 +0.4
301,062 - BACOVA_03211 0.39 -0.8
301,063 + BACOVA_03211 0.39 +0.2
301,063 + BACOVA_03211 0.39 +0.5
301,064 - BACOVA_03211 0.39 -0.1
301,066 + BACOVA_03211 0.40 +1.2
301,094 + BACOVA_03211 0.42 +0.1
301,095 - BACOVA_03211 0.42 -1.7
301,097 - BACOVA_03211 0.42 -0.5
301,117 - BACOVA_03211 0.44 -0.1
301,117 - BACOVA_03211 0.44 +0.8
301,120 + BACOVA_03211 0.45 -0.5
301,120 + BACOVA_03211 0.45 +0.3
301,120 + BACOVA_03211 0.45 -0.9
301,120 + BACOVA_03211 0.45 +1.0
301,121 - BACOVA_03211 0.45 -0.2
301,121 - BACOVA_03211 0.45 +1.3
301,238 + BACOVA_03211 0.56 +0.9
301,238 + BACOVA_03211 0.56 -0.6
301,238 + BACOVA_03211 0.56 -0.2
301,239 - BACOVA_03211 0.56 -0.7
301,241 + BACOVA_03211 0.56 -1.4
301,241 + BACOVA_03211 0.56 +0.8
301,243 + BACOVA_03211 0.56 +0.1
301,244 - BACOVA_03211 0.56 -0.6
301,274 + BACOVA_03211 0.59 -0.6
301,275 - BACOVA_03211 0.59 -0.5
301,281 - BACOVA_03211 0.60 -1.7
301,285 + BACOVA_03211 0.60 -3.3
301,358 + BACOVA_03211 0.67 -0.0
301,359 - BACOVA_03211 0.67 -0.6
301,359 - BACOVA_03211 0.67 +0.5
301,359 - BACOVA_03211 0.67 +0.5
301,364 + BACOVA_03211 0.68 -0.5
301,365 - BACOVA_03211 0.68 +1.1
301,372 + BACOVA_03211 0.69 +0.4
301,372 + BACOVA_03211 0.69 -0.6
301,372 + BACOVA_03211 0.69 -0.9
301,373 - BACOVA_03211 0.69 -0.0
301,376 - BACOVA_03211 0.69 -0.4
301,415 - BACOVA_03211 0.73 -0.4
301,417 + BACOVA_03211 0.73 +0.9
301,426 - BACOVA_03211 0.74 +1.1
301,426 - BACOVA_03211 0.74 -0.9
301,449 - BACOVA_03211 0.76 -0.2
301,451 + BACOVA_03211 0.76 -0.6
301,486 + BACOVA_03211 0.79 +0.2
301,557 - BACOVA_03211 0.86 -0.1
301,557 - BACOVA_03211 0.86 +0.5
301,626 - -1.9
301,656 + +0.9
301,684 + -0.2
301,685 - -0.0
301,689 - +0.4
301,701 - +0.4
301,721 + +0.2
301,743 + +0.6
301,743 + +0.0
301,743 + -0.6
301,744 - -1.3
301,774 - +0.4
301,789 + +0.3
301,819 - -0.7
301,861 + BACOVA_03212 0.15 -0.2
301,862 - BACOVA_03212 0.15 -1.1
301,862 - BACOVA_03212 0.15 -0.2
301,873 + BACOVA_03212 0.17 -1.5
301,897 + BACOVA_03212 0.22 +0.7
301,898 - BACOVA_03212 0.22 +0.3
301,898 - BACOVA_03212 0.22 +0.7
301,903 + BACOVA_03212 0.23 +0.3
301,927 + BACOVA_03212 0.28 -0.5
302,028 + BACOVA_03212 0.48 -0.1
302,028 + BACOVA_03212 0.48 -0.3
302,037 + BACOVA_03212 0.50 -0.9
302,065 + BACOVA_03212 0.55 +0.0
302,079 + BACOVA_03212 0.58 +0.1
302,083 + BACOVA_03212 0.59 -1.1
302,084 - BACOVA_03212 0.59 -1.3
302,084 - BACOVA_03212 0.59 -1.3
302,084 - BACOVA_03212 0.59 -0.3
302,084 - BACOVA_03212 0.59 -0.2
302,153 + BACOVA_03212 0.72 +0.1
302,162 - BACOVA_03212 0.74 -0.2
302,162 - BACOVA_03212 0.74 -0.4
302,178 + BACOVA_03212 0.77 -0.4
302,181 + BACOVA_03212 0.78 -0.2
302,182 - BACOVA_03212 0.78 -0.7
302,182 - BACOVA_03212 0.78 -0.7
302,185 + BACOVA_03212 0.79 +1.2
302,185 + BACOVA_03212 0.79 +0.7
302,186 - BACOVA_03212 0.79 -2.6
302,275 - -0.5
302,281 - -0.3
302,281 - -1.9
302,346 + BACOVA_03213 0.11 +0.4
302,347 - BACOVA_03213 0.11 +0.3
302,347 - BACOVA_03213 0.11 +0.7
302,351 + BACOVA_03213 0.12 -0.7
302,351 + BACOVA_03213 0.12 -0.0
302,352 - BACOVA_03213 0.12 -0.2
302,357 - BACOVA_03213 0.14 -0.2
302,368 - BACOVA_03213 0.17 -0.3
302,368 - BACOVA_03213 0.17 -0.9
302,395 - BACOVA_03213 0.24 +0.1
302,411 - BACOVA_03213 0.28 +0.1
302,462 + BACOVA_03213 0.42 -0.2
302,464 + BACOVA_03213 0.43 +0.7
302,464 + BACOVA_03213 0.43 -0.2
302,563 + BACOVA_03213 0.70 -1.1
302,564 - BACOVA_03213 0.70 -0.2
302,585 + BACOVA_03213 0.76 -1.2
302,587 + BACOVA_03213 0.77 -0.4
302,588 - BACOVA_03213 0.77 +0.3
302,647 + -0.0
302,647 + +0.3
302,647 + +0.7
302,647 + +0.1
302,648 - +0.2
302,648 - -0.7
302,654 + +0.9
302,692 - -0.3
302,692 - -0.9
302,695 + -0.9
302,696 - -0.3
302,698 + +0.0
302,731 + -0.0
302,732 - +1.7
302,750 + -0.4
302,757 + +0.8
302,787 + +0.1
302,788 - +0.2
302,788 - -0.1
302,790 + +0.5
302,805 - -0.5
302,894 - BACOVA_03214 0.15 -1.2
302,894 - BACOVA_03214 0.15 +0.5
302,894 - BACOVA_03214 0.15 +0.2
302,904 - BACOVA_03214 0.15 -0.1
302,905 + BACOVA_03214 0.15 +0.5
302,905 + BACOVA_03214 0.15 +0.1
302,911 - BACOVA_03214 0.16 -1.1
302,921 - BACOVA_03214 0.17 -0.8
302,964 + BACOVA_03214 0.20 -1.9
302,972 - BACOVA_03214 0.21 -0.7
302,973 + BACOVA_03214 0.21 -0.1
303,004 + BACOVA_03214 0.23 -0.6
303,049 + BACOVA_03214 0.26 +0.7
303,049 + BACOVA_03214 0.26 -1.2
303,050 - BACOVA_03214 0.27 +0.2
303,067 - BACOVA_03214 0.28 -0.6
303,089 + BACOVA_03214 0.30 +0.3
303,120 - BACOVA_03214 0.32 -0.0
303,175 - BACOVA_03214 0.36 -1.7
303,190 + BACOVA_03214 0.37 +0.6
303,210 - BACOVA_03214 0.39 -0.3
303,255 - BACOVA_03214 0.42 -0.1
303,281 + BACOVA_03214 0.44 +0.2
303,291 - BACOVA_03214 0.45 -1.3

Or see this region's nucleotide sequence