Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03211

Experiment: L-Rhamnose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03208 and BACOVA_03209 are separated by 202 nucleotidesBACOVA_03209 and BACOVA_03210 are separated by 78 nucleotidesBACOVA_03210 and BACOVA_03211 are separated by 79 nucleotidesBACOVA_03211 and BACOVA_03212 are separated by 81 nucleotidesBACOVA_03212 and BACOVA_03213 are separated by 13 nucleotidesBACOVA_03213 and BACOVA_03214 are separated by 29 nucleotides BACOVA_03208: BACOVA_03208 - hypothetical protein, at 299,442 to 299,909 _03208 BACOVA_03209: BACOVA_03209 - hypothetical protein, at 300,112 to 300,387 _03209 BACOVA_03210: BACOVA_03210 - hypothetical protein, at 300,466 to 300,570 _03210 BACOVA_03211: BACOVA_03211 - hypothetical protein, at 300,650 to 301,702 _03211 BACOVA_03212: BACOVA_03212 - hypothetical protein, at 301,784 to 302,293 _03212 BACOVA_03213: BACOVA_03213 - hypothetical protein, at 302,307 to 302,672 _03213 BACOVA_03214: BACOVA_03214 - hypothetical protein, at 302,702 to 304,012 _03214 Position (kb) 300 301 302Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 299.660 kb on + strand, within BACOVA_03208at 299.661 kb on - strand, within BACOVA_03208at 299.661 kb on - strand, within BACOVA_03208at 299.661 kb on - strand, within BACOVA_03208at 299.664 kb on + strand, within BACOVA_03208at 299.664 kb on + strand, within BACOVA_03208at 299.687 kb on + strand, within BACOVA_03208at 299.688 kb on - strand, within BACOVA_03208at 299.693 kb on + strand, within BACOVA_03208at 299.693 kb on + strand, within BACOVA_03208at 299.693 kb on + strand, within BACOVA_03208at 299.693 kb on + strand, within BACOVA_03208at 299.693 kb on + strand, within BACOVA_03208at 299.693 kb on + strand, within BACOVA_03208at 299.694 kb on - strand, within BACOVA_03208at 299.694 kb on - strand, within BACOVA_03208at 299.694 kb on - strand, within BACOVA_03208at 299.696 kb on + strand, within BACOVA_03208at 299.724 kb on + strand, within BACOVA_03208at 299.725 kb on - strand, within BACOVA_03208at 299.797 kb on + strand, within BACOVA_03208at 299.797 kb on + strand, within BACOVA_03208at 299.797 kb on + strand, within BACOVA_03208at 299.799 kb on + strand, within BACOVA_03208at 299.799 kb on + strand, within BACOVA_03208at 299.800 kb on - strand, within BACOVA_03208at 299.800 kb on - strand, within BACOVA_03208at 299.802 kb on + strand, within BACOVA_03208at 299.840 kb on - strand, within BACOVA_03208at 299.840 kb on - strand, within BACOVA_03208at 299.840 kb on - strand, within BACOVA_03208at 299.843 kb on + strand, within BACOVA_03208at 299.844 kb on - strand, within BACOVA_03208at 299.844 kb on - strand, within BACOVA_03208at 299.844 kb on - strand, within BACOVA_03208at 299.851 kb on - strand, within BACOVA_03208at 299.856 kb on - strand, within BACOVA_03208at 299.860 kb on - strand, within BACOVA_03208at 299.869 kb on + strandat 299.869 kb on + strandat 299.874 kb on + strandat 299.891 kb on + strandat 299.896 kb on + strandat 299.896 kb on + strandat 299.897 kb on - strandat 299.932 kb on - strandat 300.023 kb on - strandat 300.049 kb on - strandat 300.100 kb on - strandat 300.108 kb on + strandat 300.108 kb on + strandat 300.109 kb on - strandat 300.110 kb on + strandat 300.111 kb on - strandat 300.111 kb on - strandat 300.138 kb on + strandat 300.231 kb on + strand, within BACOVA_03209at 300.232 kb on - strand, within BACOVA_03209at 300.271 kb on - strand, within BACOVA_03209at 300.316 kb on + strand, within BACOVA_03209at 300.316 kb on + strand, within BACOVA_03209at 300.318 kb on + strand, within BACOVA_03209at 300.321 kb on - strand, within BACOVA_03209at 300.321 kb on - strand, within BACOVA_03209at 300.352 kb on + strand, within BACOVA_03209at 300.354 kb on + strand, within BACOVA_03209at 300.360 kb on - strandat 300.368 kb on - strandat 300.371 kb on + strandat 300.372 kb on - strandat 300.386 kb on - strandat 300.454 kb on + strandat 300.454 kb on + strandat 300.455 kb on - strandat 300.455 kb on - strandat 300.455 kb on - strandat 300.465 kb on - strandat 300.465 kb on - strandat 300.536 kb on + strand, within BACOVA_03210at 300.552 kb on + strand, within BACOVA_03210at 300.554 kb on + strand, within BACOVA_03210at 300.554 kb on + strand, within BACOVA_03210at 300.554 kb on + strand, within BACOVA_03210at 300.555 kb on - strand, within BACOVA_03210at 300.555 kb on - strand, within BACOVA_03210at 300.577 kb on - strandat 300.588 kb on - strandat 300.634 kb on - strandat 300.634 kb on - strandat 300.670 kb on - strandat 300.697 kb on + strandat 300.706 kb on - strandat 300.753 kb on + strandat 300.818 kb on + strand, within BACOVA_03211at 300.819 kb on - strand, within BACOVA_03211at 300.821 kb on + strand, within BACOVA_03211at 300.822 kb on - strand, within BACOVA_03211at 300.990 kb on - strand, within BACOVA_03211at 300.990 kb on - strand, within BACOVA_03211at 300.991 kb on + strand, within BACOVA_03211at 300.991 kb on + strand, within BACOVA_03211at 300.992 kb on - strand, within BACOVA_03211at 300.992 kb on - strand, within BACOVA_03211at 300.992 kb on - strand, within BACOVA_03211at 301.012 kb on + strand, within BACOVA_03211at 301.012 kb on + strand, within BACOVA_03211at 301.013 kb on - strand, within BACOVA_03211at 301.013 kb on - strand, within BACOVA_03211at 301.013 kb on - strand, within BACOVA_03211at 301.057 kb on + strand, within BACOVA_03211at 301.062 kb on - strand, within BACOVA_03211at 301.063 kb on + strand, within BACOVA_03211at 301.063 kb on + strand, within BACOVA_03211at 301.064 kb on - strand, within BACOVA_03211at 301.066 kb on + strand, within BACOVA_03211at 301.094 kb on + strand, within BACOVA_03211at 301.095 kb on - strand, within BACOVA_03211at 301.097 kb on - strand, within BACOVA_03211at 301.117 kb on - strand, within BACOVA_03211at 301.117 kb on - strand, within BACOVA_03211at 301.120 kb on + strand, within BACOVA_03211at 301.120 kb on + strand, within BACOVA_03211at 301.120 kb on + strand, within BACOVA_03211at 301.120 kb on + strand, within BACOVA_03211at 301.121 kb on - strand, within BACOVA_03211at 301.121 kb on - strand, within BACOVA_03211at 301.238 kb on + strand, within BACOVA_03211at 301.238 kb on + strand, within BACOVA_03211at 301.238 kb on + strand, within BACOVA_03211at 301.239 kb on - strand, within BACOVA_03211at 301.241 kb on + strand, within BACOVA_03211at 301.241 kb on + strand, within BACOVA_03211at 301.243 kb on + strand, within BACOVA_03211at 301.244 kb on - strand, within BACOVA_03211at 301.274 kb on + strand, within BACOVA_03211at 301.275 kb on - strand, within BACOVA_03211at 301.281 kb on - strand, within BACOVA_03211at 301.285 kb on + strand, within BACOVA_03211at 301.358 kb on + strand, within BACOVA_03211at 301.359 kb on - strand, within BACOVA_03211at 301.359 kb on - strand, within BACOVA_03211at 301.359 kb on - strand, within BACOVA_03211at 301.364 kb on + strand, within BACOVA_03211at 301.365 kb on - strand, within BACOVA_03211at 301.372 kb on + strand, within BACOVA_03211at 301.372 kb on + strand, within BACOVA_03211at 301.372 kb on + strand, within BACOVA_03211at 301.373 kb on - strand, within BACOVA_03211at 301.376 kb on - strand, within BACOVA_03211at 301.415 kb on - strand, within BACOVA_03211at 301.417 kb on + strand, within BACOVA_03211at 301.426 kb on - strand, within BACOVA_03211at 301.426 kb on - strand, within BACOVA_03211at 301.449 kb on - strand, within BACOVA_03211at 301.451 kb on + strand, within BACOVA_03211at 301.486 kb on + strand, within BACOVA_03211at 301.557 kb on - strand, within BACOVA_03211at 301.557 kb on - strand, within BACOVA_03211at 301.626 kb on - strandat 301.656 kb on + strandat 301.684 kb on + strandat 301.685 kb on - strandat 301.689 kb on - strandat 301.701 kb on - strandat 301.721 kb on + strandat 301.743 kb on + strandat 301.743 kb on + strandat 301.743 kb on + strandat 301.744 kb on - strandat 301.774 kb on - strandat 301.789 kb on + strandat 301.819 kb on - strandat 301.861 kb on + strand, within BACOVA_03212at 301.862 kb on - strand, within BACOVA_03212at 301.862 kb on - strand, within BACOVA_03212at 301.873 kb on + strand, within BACOVA_03212at 301.897 kb on + strand, within BACOVA_03212at 301.898 kb on - strand, within BACOVA_03212at 301.898 kb on - strand, within BACOVA_03212at 301.903 kb on + strand, within BACOVA_03212at 301.927 kb on + strand, within BACOVA_03212at 302.028 kb on + strand, within BACOVA_03212at 302.028 kb on + strand, within BACOVA_03212at 302.037 kb on + strand, within BACOVA_03212at 302.065 kb on + strand, within BACOVA_03212at 302.079 kb on + strand, within BACOVA_03212at 302.083 kb on + strand, within BACOVA_03212at 302.084 kb on - strand, within BACOVA_03212at 302.084 kb on - strand, within BACOVA_03212at 302.084 kb on - strand, within BACOVA_03212at 302.084 kb on - strand, within BACOVA_03212at 302.153 kb on + strand, within BACOVA_03212at 302.162 kb on - strand, within BACOVA_03212at 302.162 kb on - strand, within BACOVA_03212at 302.178 kb on + strand, within BACOVA_03212at 302.181 kb on + strand, within BACOVA_03212at 302.182 kb on - strand, within BACOVA_03212at 302.182 kb on - strand, within BACOVA_03212at 302.185 kb on + strand, within BACOVA_03212at 302.185 kb on + strand, within BACOVA_03212at 302.186 kb on - strand, within BACOVA_03212at 302.275 kb on - strandat 302.281 kb on - strandat 302.281 kb on - strandat 302.346 kb on + strand, within BACOVA_03213at 302.347 kb on - strand, within BACOVA_03213at 302.347 kb on - strand, within BACOVA_03213at 302.351 kb on + strand, within BACOVA_03213at 302.351 kb on + strand, within BACOVA_03213at 302.352 kb on - strand, within BACOVA_03213at 302.357 kb on - strand, within BACOVA_03213at 302.368 kb on - strand, within BACOVA_03213at 302.368 kb on - strand, within BACOVA_03213at 302.395 kb on - strand, within BACOVA_03213at 302.411 kb on - strand, within BACOVA_03213at 302.462 kb on + strand, within BACOVA_03213at 302.464 kb on + strand, within BACOVA_03213at 302.464 kb on + strand, within BACOVA_03213at 302.563 kb on + strand, within BACOVA_03213at 302.564 kb on - strand, within BACOVA_03213at 302.585 kb on + strand, within BACOVA_03213at 302.587 kb on + strand, within BACOVA_03213at 302.588 kb on - strand, within BACOVA_03213at 302.647 kb on + strandat 302.647 kb on + strandat 302.647 kb on + strandat 302.647 kb on + strandat 302.648 kb on - strandat 302.648 kb on - strandat 302.654 kb on + strandat 302.692 kb on - strandat 302.692 kb on - strandat 302.695 kb on + strandat 302.696 kb on - strandat 302.698 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C)
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299,660 + BACOVA_03208 0.47 -0.9
299,661 - BACOVA_03208 0.47 +0.5
299,661 - BACOVA_03208 0.47 +0.4
299,661 - BACOVA_03208 0.47 +1.3
299,664 + BACOVA_03208 0.47 +0.0
299,664 + BACOVA_03208 0.47 +0.4
299,687 + BACOVA_03208 0.52 -0.8
299,688 - BACOVA_03208 0.53 +0.3
299,693 + BACOVA_03208 0.54 +0.4
299,693 + BACOVA_03208 0.54 +0.4
299,693 + BACOVA_03208 0.54 +2.1
299,693 + BACOVA_03208 0.54 +0.5
299,693 + BACOVA_03208 0.54 +0.4
299,693 + BACOVA_03208 0.54 +0.3
299,694 - BACOVA_03208 0.54 -0.1
299,694 - BACOVA_03208 0.54 -1.3
299,694 - BACOVA_03208 0.54 +0.8
299,696 + BACOVA_03208 0.54 +0.6
299,724 + BACOVA_03208 0.60 +1.0
299,725 - BACOVA_03208 0.60 -0.8
299,797 + BACOVA_03208 0.76 +0.1
299,797 + BACOVA_03208 0.76 -0.3
299,797 + BACOVA_03208 0.76 -0.1
299,799 + BACOVA_03208 0.76 -1.1
299,799 + BACOVA_03208 0.76 +0.7
299,800 - BACOVA_03208 0.76 +0.4
299,800 - BACOVA_03208 0.76 +0.3
299,802 + BACOVA_03208 0.77 +0.9
299,840 - BACOVA_03208 0.85 +0.1
299,840 - BACOVA_03208 0.85 -0.7
299,840 - BACOVA_03208 0.85 -0.6
299,843 + BACOVA_03208 0.86 +0.1
299,844 - BACOVA_03208 0.86 +0.4
299,844 - BACOVA_03208 0.86 -0.3
299,844 - BACOVA_03208 0.86 -0.9
299,851 - BACOVA_03208 0.87 +0.3
299,856 - BACOVA_03208 0.88 -0.4
299,860 - BACOVA_03208 0.89 -1.1
299,869 + -0.4
299,869 + +0.6
299,874 + +0.3
299,891 + -0.1
299,896 + +0.5
299,896 + -0.8
299,897 - -1.1
299,932 - +0.3
300,023 - +0.3
300,049 - +0.7
300,100 - -2.3
300,108 + +0.2
300,108 + +0.1
300,109 - -0.7
300,110 + -0.4
300,111 - -0.8
300,111 - -0.7
300,138 + +0.5
300,231 + BACOVA_03209 0.43 +0.2
300,232 - BACOVA_03209 0.43 -0.5
300,271 - BACOVA_03209 0.58 +0.5
300,316 + BACOVA_03209 0.74 +1.1
300,316 + BACOVA_03209 0.74 -0.4
300,318 + BACOVA_03209 0.75 -1.2
300,321 - BACOVA_03209 0.76 -0.1
300,321 - BACOVA_03209 0.76 -0.2
300,352 + BACOVA_03209 0.87 +0.2
300,354 + BACOVA_03209 0.88 +0.6
300,360 - -0.6
300,368 - -0.0
300,371 + +0.1
300,372 - -0.7
300,386 - -1.3
300,454 + +0.7
300,454 + +0.7
300,455 - -1.3
300,455 - -0.2
300,455 - +1.0
300,465 - -0.9
300,465 - +0.8
300,536 + BACOVA_03210 0.67 -0.9
300,552 + BACOVA_03210 0.82 -0.9
300,554 + BACOVA_03210 0.84 +0.5
300,554 + BACOVA_03210 0.84 -0.5
300,554 + BACOVA_03210 0.84 +0.0
300,555 - BACOVA_03210 0.85 -0.3
300,555 - BACOVA_03210 0.85 -0.1
300,577 - +0.2
300,588 - -0.4
300,634 - -0.1
300,634 - -0.4
300,670 - -0.6
300,697 + +1.1
300,706 - +0.4
300,753 + +0.5
300,818 + BACOVA_03211 0.16 +0.1
300,819 - BACOVA_03211 0.16 +0.0
300,821 + BACOVA_03211 0.16 +1.2
300,822 - BACOVA_03211 0.16 -0.1
300,990 - BACOVA_03211 0.32 -1.4
300,990 - BACOVA_03211 0.32 +0.7
300,991 + BACOVA_03211 0.32 +1.0
300,991 + BACOVA_03211 0.32 -0.9
300,992 - BACOVA_03211 0.32 -0.1
300,992 - BACOVA_03211 0.32 -0.0
300,992 - BACOVA_03211 0.32 +0.2
301,012 + BACOVA_03211 0.34 +0.5
301,012 + BACOVA_03211 0.34 +0.3
301,013 - BACOVA_03211 0.34 -0.0
301,013 - BACOVA_03211 0.34 -1.8
301,013 - BACOVA_03211 0.34 +0.5
301,057 + BACOVA_03211 0.39 +0.4
301,062 - BACOVA_03211 0.39 -0.8
301,063 + BACOVA_03211 0.39 +0.2
301,063 + BACOVA_03211 0.39 +0.5
301,064 - BACOVA_03211 0.39 -0.1
301,066 + BACOVA_03211 0.40 +1.2
301,094 + BACOVA_03211 0.42 +0.1
301,095 - BACOVA_03211 0.42 -1.7
301,097 - BACOVA_03211 0.42 -0.5
301,117 - BACOVA_03211 0.44 -0.1
301,117 - BACOVA_03211 0.44 +0.8
301,120 + BACOVA_03211 0.45 -0.5
301,120 + BACOVA_03211 0.45 +0.3
301,120 + BACOVA_03211 0.45 -0.9
301,120 + BACOVA_03211 0.45 +1.0
301,121 - BACOVA_03211 0.45 -0.2
301,121 - BACOVA_03211 0.45 +1.3
301,238 + BACOVA_03211 0.56 +0.9
301,238 + BACOVA_03211 0.56 -0.6
301,238 + BACOVA_03211 0.56 -0.2
301,239 - BACOVA_03211 0.56 -0.7
301,241 + BACOVA_03211 0.56 -1.4
301,241 + BACOVA_03211 0.56 +0.8
301,243 + BACOVA_03211 0.56 +0.1
301,244 - BACOVA_03211 0.56 -0.6
301,274 + BACOVA_03211 0.59 -0.6
301,275 - BACOVA_03211 0.59 -0.5
301,281 - BACOVA_03211 0.60 -1.7
301,285 + BACOVA_03211 0.60 -3.3
301,358 + BACOVA_03211 0.67 -0.0
301,359 - BACOVA_03211 0.67 -0.6
301,359 - BACOVA_03211 0.67 +0.5
301,359 - BACOVA_03211 0.67 +0.5
301,364 + BACOVA_03211 0.68 -0.5
301,365 - BACOVA_03211 0.68 +1.1
301,372 + BACOVA_03211 0.69 +0.4
301,372 + BACOVA_03211 0.69 -0.6
301,372 + BACOVA_03211 0.69 -0.9
301,373 - BACOVA_03211 0.69 -0.0
301,376 - BACOVA_03211 0.69 -0.4
301,415 - BACOVA_03211 0.73 -0.4
301,417 + BACOVA_03211 0.73 +0.9
301,426 - BACOVA_03211 0.74 +1.1
301,426 - BACOVA_03211 0.74 -0.9
301,449 - BACOVA_03211 0.76 -0.2
301,451 + BACOVA_03211 0.76 -0.6
301,486 + BACOVA_03211 0.79 +0.2
301,557 - BACOVA_03211 0.86 -0.1
301,557 - BACOVA_03211 0.86 +0.5
301,626 - -1.9
301,656 + +0.9
301,684 + -0.2
301,685 - -0.0
301,689 - +0.4
301,701 - +0.4
301,721 + +0.2
301,743 + +0.6
301,743 + +0.0
301,743 + -0.6
301,744 - -1.3
301,774 - +0.4
301,789 + +0.3
301,819 - -0.7
301,861 + BACOVA_03212 0.15 -0.2
301,862 - BACOVA_03212 0.15 -1.1
301,862 - BACOVA_03212 0.15 -0.2
301,873 + BACOVA_03212 0.17 -1.5
301,897 + BACOVA_03212 0.22 +0.7
301,898 - BACOVA_03212 0.22 +0.3
301,898 - BACOVA_03212 0.22 +0.7
301,903 + BACOVA_03212 0.23 +0.3
301,927 + BACOVA_03212 0.28 -0.5
302,028 + BACOVA_03212 0.48 -0.1
302,028 + BACOVA_03212 0.48 -0.3
302,037 + BACOVA_03212 0.50 -0.9
302,065 + BACOVA_03212 0.55 +0.0
302,079 + BACOVA_03212 0.58 +0.1
302,083 + BACOVA_03212 0.59 -1.1
302,084 - BACOVA_03212 0.59 -1.3
302,084 - BACOVA_03212 0.59 -1.3
302,084 - BACOVA_03212 0.59 -0.3
302,084 - BACOVA_03212 0.59 -0.2
302,153 + BACOVA_03212 0.72 +0.1
302,162 - BACOVA_03212 0.74 -0.2
302,162 - BACOVA_03212 0.74 -0.4
302,178 + BACOVA_03212 0.77 -0.4
302,181 + BACOVA_03212 0.78 -0.2
302,182 - BACOVA_03212 0.78 -0.7
302,182 - BACOVA_03212 0.78 -0.7
302,185 + BACOVA_03212 0.79 +1.2
302,185 + BACOVA_03212 0.79 +0.7
302,186 - BACOVA_03212 0.79 -2.6
302,275 - -0.5
302,281 - -0.3
302,281 - -1.9
302,346 + BACOVA_03213 0.11 +0.4
302,347 - BACOVA_03213 0.11 +0.3
302,347 - BACOVA_03213 0.11 +0.7
302,351 + BACOVA_03213 0.12 -0.7
302,351 + BACOVA_03213 0.12 -0.0
302,352 - BACOVA_03213 0.12 -0.2
302,357 - BACOVA_03213 0.14 -0.2
302,368 - BACOVA_03213 0.17 -0.3
302,368 - BACOVA_03213 0.17 -0.9
302,395 - BACOVA_03213 0.24 +0.1
302,411 - BACOVA_03213 0.28 +0.1
302,462 + BACOVA_03213 0.42 -0.2
302,464 + BACOVA_03213 0.43 +0.7
302,464 + BACOVA_03213 0.43 -0.2
302,563 + BACOVA_03213 0.70 -1.1
302,564 - BACOVA_03213 0.70 -0.2
302,585 + BACOVA_03213 0.76 -1.2
302,587 + BACOVA_03213 0.77 -0.4
302,588 - BACOVA_03213 0.77 +0.3
302,647 + -0.0
302,647 + +0.3
302,647 + +0.7
302,647 + +0.1
302,648 - +0.2
302,648 - -0.7
302,654 + +0.9
302,692 - -0.3
302,692 - -0.9
302,695 + -0.9
302,696 - -0.3
302,698 + +0.0

Or see this region's nucleotide sequence