Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02856

Experiment: L-Rhamnose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02854 and BACOVA_02855 are separated by 38 nucleotidesBACOVA_02855 and BACOVA_02856 are separated by 594 nucleotidesBACOVA_02856 and BACOVA_02857 are separated by 302 nucleotides BACOVA_02854: BACOVA_02854 - hypothetical protein, at 338,684 to 338,902 _02854 BACOVA_02855: BACOVA_02855 - hypothetical protein, at 338,941 to 339,063 _02855 BACOVA_02856: BACOVA_02856 - hypothetical protein, at 339,658 to 339,921 _02856 BACOVA_02857: BACOVA_02857 - conserved hypothetical protein TIGR03982, at 340,224 to 344,234 _02857 Position (kb) 339 340Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 338.700 kb on - strandat 338.731 kb on - strand, within BACOVA_02854at 338.826 kb on + strand, within BACOVA_02854at 338.830 kb on + strand, within BACOVA_02854at 338.863 kb on - strand, within BACOVA_02854at 338.901 kb on - strandat 338.955 kb on + strand, within BACOVA_02855at 338.967 kb on - strand, within BACOVA_02855at 339.126 kb on - strandat 339.138 kb on - strandat 339.173 kb on + strandat 339.178 kb on - strandat 339.226 kb on - strandat 339.344 kb on + strandat 339.344 kb on + strandat 339.353 kb on + strandat 339.369 kb on - strandat 339.374 kb on + strandat 339.375 kb on - strandat 339.385 kb on + strandat 339.386 kb on - strandat 339.386 kb on - strandat 339.411 kb on - strandat 339.412 kb on + strandat 339.413 kb on - strandat 339.413 kb on - strandat 339.414 kb on + strandat 339.414 kb on + strandat 339.415 kb on - strandat 339.415 kb on - strandat 339.418 kb on - strandat 339.427 kb on - strandat 339.441 kb on - strandat 339.553 kb on + strandat 339.554 kb on - strandat 339.554 kb on - strandat 339.555 kb on + strandat 339.556 kb on - strandat 339.600 kb on + strandat 339.706 kb on + strand, within BACOVA_02856at 339.716 kb on + strand, within BACOVA_02856at 339.716 kb on + strand, within BACOVA_02856at 339.716 kb on + strand, within BACOVA_02856at 339.716 kb on + strand, within BACOVA_02856at 339.717 kb on - strand, within BACOVA_02856at 339.717 kb on - strand, within BACOVA_02856at 339.751 kb on + strand, within BACOVA_02856at 339.836 kb on - strand, within BACOVA_02856at 339.861 kb on + strand, within BACOVA_02856at 339.861 kb on + strand, within BACOVA_02856at 339.862 kb on - strand, within BACOVA_02856at 339.876 kb on - strand, within BACOVA_02856at 339.876 kb on - strand, within BACOVA_02856at 339.879 kb on + strand, within BACOVA_02856at 339.921 kb on + strandat 339.921 kb on + strandat 339.970 kb on + strandat 339.971 kb on - strandat 340.010 kb on - strandat 340.010 kb on - strandat 340.011 kb on + strandat 340.012 kb on - strandat 340.033 kb on + strandat 340.033 kb on + strandat 340.034 kb on - strandat 340.042 kb on - strandat 340.042 kb on - strandat 340.042 kb on - strandat 340.103 kb on - strandat 340.203 kb on + strandat 340.203 kb on + strandat 340.203 kb on + strandat 340.208 kb on - strandat 340.226 kb on - strandat 340.264 kb on - strandat 340.378 kb on + strandat 340.419 kb on + strandat 340.515 kb on - strandat 340.515 kb on - strandat 340.515 kb on - strandat 340.612 kb on + strandat 340.698 kb on + strand, within BACOVA_02857at 340.716 kb on + strand, within BACOVA_02857at 340.717 kb on - strand, within BACOVA_02857at 340.717 kb on - strand, within BACOVA_02857at 340.719 kb on - strand, within BACOVA_02857at 340.719 kb on - strand, within BACOVA_02857at 340.721 kb on - strand, within BACOVA_02857at 340.808 kb on + strand, within BACOVA_02857at 340.809 kb on - strand, within BACOVA_02857at 340.833 kb on + strand, within BACOVA_02857at 340.877 kb on + strand, within BACOVA_02857at 340.878 kb on - strand, within BACOVA_02857at 340.885 kb on - strand, within BACOVA_02857

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C)
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338,700 - +0.1
338,731 - BACOVA_02854 0.21 +0.6
338,826 + BACOVA_02854 0.65 +0.1
338,830 + BACOVA_02854 0.67 -0.7
338,863 - BACOVA_02854 0.82 +0.4
338,901 - +0.4
338,955 + BACOVA_02855 0.11 -0.2
338,967 - BACOVA_02855 0.21 -0.4
339,126 - -0.4
339,138 - -0.1
339,173 + +0.5
339,178 - +0.5
339,226 - +0.1
339,344 + +0.6
339,344 + -3.9
339,353 + -0.7
339,369 - +0.3
339,374 + +0.6
339,375 - -0.6
339,385 + -1.0
339,386 - -0.3
339,386 - -0.4
339,411 - +0.3
339,412 + +0.6
339,413 - +0.9
339,413 - +0.2
339,414 + +0.0
339,414 + -0.7
339,415 - -0.4
339,415 - -0.2
339,418 - -2.2
339,427 - -0.8
339,441 - -0.4
339,553 + -0.7
339,554 - -2.3
339,554 - +0.4
339,555 + +0.4
339,556 - +0.6
339,600 + -0.8
339,706 + BACOVA_02856 0.18 +0.4
339,716 + BACOVA_02856 0.22 -2.4
339,716 + BACOVA_02856 0.22 +0.9
339,716 + BACOVA_02856 0.22 +0.7
339,716 + BACOVA_02856 0.22 +0.5
339,717 - BACOVA_02856 0.22 -1.3
339,717 - BACOVA_02856 0.22 +0.1
339,751 + BACOVA_02856 0.35 -0.8
339,836 - BACOVA_02856 0.67 -0.3
339,861 + BACOVA_02856 0.77 -0.2
339,861 + BACOVA_02856 0.77 +1.0
339,862 - BACOVA_02856 0.77 -0.1
339,876 - BACOVA_02856 0.83 +0.4
339,876 - BACOVA_02856 0.83 -1.1
339,879 + BACOVA_02856 0.84 +1.1
339,921 + +0.6
339,921 + +0.1
339,970 + -0.7
339,971 - +0.7
340,010 - -0.0
340,010 - -0.2
340,011 + -1.2
340,012 - -0.1
340,033 + -0.3
340,033 + +0.4
340,034 - -0.7
340,042 - +0.3
340,042 - +0.6
340,042 - +0.1
340,103 - +1.1
340,203 + -0.4
340,203 + +0.5
340,203 + +0.0
340,208 - -0.5
340,226 - -1.0
340,264 - -0.0
340,378 + +0.4
340,419 + -0.7
340,515 - -0.5
340,515 - -0.3
340,515 - -0.1
340,612 + +0.1
340,698 + BACOVA_02857 0.12 +1.1
340,716 + BACOVA_02857 0.12 +0.1
340,717 - BACOVA_02857 0.12 -0.0
340,717 - BACOVA_02857 0.12 +1.4
340,719 - BACOVA_02857 0.12 -0.4
340,719 - BACOVA_02857 0.12 -0.2
340,721 - BACOVA_02857 0.12 -1.0
340,808 + BACOVA_02857 0.15 +0.2
340,809 - BACOVA_02857 0.15 -0.5
340,833 + BACOVA_02857 0.15 +0.3
340,877 + BACOVA_02857 0.16 -0.4
340,878 - BACOVA_02857 0.16 +1.1
340,885 - BACOVA_02857 0.16 +0.1

Or see this region's nucleotide sequence