Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02418

Experiment: L-Rhamnose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02416 and BACOVA_02417 are separated by 108 nucleotidesBACOVA_02417 and BACOVA_02418 are separated by 102 nucleotidesBACOVA_02418 and BACOVA_02419 are separated by 5 nucleotidesBACOVA_02419 and BACOVA_02420 overlap by 1 nucleotides BACOVA_02416: BACOVA_02416 - ATP synthase F0, A subunit, at 182,853 to 183,947 _02416 BACOVA_02417: BACOVA_02417 - ATP synthase F0, C subunit, at 184,056 to 184,313 _02417 BACOVA_02418: BACOVA_02418 - ATP synthase F0, B subunit, at 184,416 to 184,919 _02418 BACOVA_02419: BACOVA_02419 - ATP synthase F1, delta subunit, at 184,925 to 185,485 _02419 BACOVA_02420: BACOVA_02420 - ATP synthase F1, alpha subunit, at 185,485 to 187,068 _02420 Position (kb) 184 185Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 183.429 kb on + strand, within BACOVA_02416at 183.430 kb on - strand, within BACOVA_02416at 183.458 kb on + strand, within BACOVA_02416at 183.459 kb on - strand, within BACOVA_02416at 183.465 kb on - strand, within BACOVA_02416at 183.465 kb on - strand, within BACOVA_02416at 183.525 kb on - strand, within BACOVA_02416at 183.530 kb on + strand, within BACOVA_02416at 183.567 kb on - strand, within BACOVA_02416at 183.614 kb on - strand, within BACOVA_02416at 183.637 kb on + strand, within BACOVA_02416at 183.714 kb on - strand, within BACOVA_02416at 183.714 kb on - strand, within BACOVA_02416at 183.831 kb on - strand, within BACOVA_02416at 183.874 kb on + strandat 183.875 kb on - strandat 183.875 kb on - strandat 183.878 kb on + strandat 183.878 kb on + strandat 183.981 kb on + strandat 183.982 kb on - strandat 184.016 kb on + strandat 184.031 kb on - strandat 184.033 kb on - strandat 184.060 kb on + strandat 184.064 kb on - strandat 184.075 kb on + strandat 184.075 kb on + strandat 184.075 kb on + strandat 184.075 kb on + strandat 184.076 kb on - strandat 184.096 kb on + strand, within BACOVA_02417at 184.096 kb on + strand, within BACOVA_02417at 184.097 kb on - strand, within BACOVA_02417at 184.141 kb on + strand, within BACOVA_02417at 184.141 kb on + strand, within BACOVA_02417at 184.166 kb on + strand, within BACOVA_02417at 184.166 kb on + strand, within BACOVA_02417at 184.167 kb on - strand, within BACOVA_02417at 184.230 kb on - strand, within BACOVA_02417at 184.241 kb on + strand, within BACOVA_02417at 184.283 kb on - strand, within BACOVA_02417at 184.321 kb on + strandat 184.324 kb on - strandat 184.408 kb on + strandat 184.415 kb on + strandat 184.423 kb on + strandat 184.423 kb on + strandat 184.423 kb on + strandat 184.424 kb on - strandat 184.436 kb on + strandat 184.500 kb on - strand, within BACOVA_02418at 184.536 kb on - strand, within BACOVA_02418at 184.542 kb on + strand, within BACOVA_02418at 184.543 kb on - strand, within BACOVA_02418at 184.545 kb on - strand, within BACOVA_02418at 184.883 kb on + strandat 184.883 kb on + strandat 184.917 kb on + strandat 184.918 kb on - strandat 184.973 kb on + strandat 184.973 kb on + strandat 185.004 kb on + strand, within BACOVA_02419at 185.004 kb on + strand, within BACOVA_02419at 185.004 kb on + strand, within BACOVA_02419at 185.005 kb on - strand, within BACOVA_02419at 185.007 kb on - strand, within BACOVA_02419at 185.172 kb on + strand, within BACOVA_02419at 185.195 kb on + strand, within BACOVA_02419at 185.196 kb on - strand, within BACOVA_02419at 185.196 kb on - strand, within BACOVA_02419at 185.206 kb on + strand, within BACOVA_02419at 185.219 kb on + strand, within BACOVA_02419at 185.220 kb on - strand, within BACOVA_02419at 185.220 kb on - strand, within BACOVA_02419at 185.270 kb on - strand, within BACOVA_02419at 185.270 kb on - strand, within BACOVA_02419at 185.287 kb on + strand, within BACOVA_02419at 185.287 kb on + strand, within BACOVA_02419at 185.288 kb on - strand, within BACOVA_02419at 185.326 kb on + strand, within BACOVA_02419at 185.327 kb on - strand, within BACOVA_02419at 185.327 kb on - strand, within BACOVA_02419at 185.465 kb on - strandat 185.481 kb on + strandat 185.520 kb on + strandat 185.520 kb on + strandat 185.521 kb on - strandat 185.523 kb on - strandat 185.523 kb on - strandat 185.603 kb on + strandat 185.610 kb on + strandat 185.610 kb on + strandat 185.610 kb on + strandat 185.615 kb on - strandat 185.615 kb on - strandat 185.615 kb on - strandat 185.615 kb on - strandat 185.665 kb on - strand, within BACOVA_02420at 185.786 kb on + strand, within BACOVA_02420at 185.867 kb on - strand, within BACOVA_02420at 185.867 kb on - strand, within BACOVA_02420at 185.871 kb on + strand, within BACOVA_02420at 185.906 kb on - strand, within BACOVA_02420at 185.906 kb on - strand, within BACOVA_02420

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C)
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183,429 + BACOVA_02416 0.53 -2.5
183,430 - BACOVA_02416 0.53 -2.2
183,458 + BACOVA_02416 0.55 -3.1
183,459 - BACOVA_02416 0.55 -2.3
183,465 - BACOVA_02416 0.56 -1.6
183,465 - BACOVA_02416 0.56 -1.9
183,525 - BACOVA_02416 0.61 -1.8
183,530 + BACOVA_02416 0.62 -3.5
183,567 - BACOVA_02416 0.65 -1.9
183,614 - BACOVA_02416 0.69 -1.5
183,637 + BACOVA_02416 0.72 -1.8
183,714 - BACOVA_02416 0.79 -2.1
183,714 - BACOVA_02416 0.79 -3.0
183,831 - BACOVA_02416 0.89 -3.6
183,874 + -2.0
183,875 - -2.4
183,875 - -1.7
183,878 + -2.8
183,878 + -1.4
183,981 + -0.6
183,982 - -1.7
184,016 + -1.7
184,031 - -3.1
184,033 - -2.9
184,060 + -0.6
184,064 - -2.8
184,075 + -3.1
184,075 + -2.2
184,075 + -2.0
184,075 + -2.2
184,076 - -1.6
184,096 + BACOVA_02417 0.16 -0.8
184,096 + BACOVA_02417 0.16 -1.8
184,097 - BACOVA_02417 0.16 -2.3
184,141 + BACOVA_02417 0.33 -1.3
184,141 + BACOVA_02417 0.33 -1.7
184,166 + BACOVA_02417 0.43 -0.6
184,166 + BACOVA_02417 0.43 -3.2
184,167 - BACOVA_02417 0.43 -1.4
184,230 - BACOVA_02417 0.67 -2.9
184,241 + BACOVA_02417 0.72 +0.4
184,283 - BACOVA_02417 0.88 -2.5
184,321 + +0.1
184,324 - -1.9
184,408 + -1.8
184,415 + -2.3
184,423 + -3.5
184,423 + -1.6
184,423 + -3.0
184,424 - -1.1
184,436 + -2.3
184,500 - BACOVA_02418 0.17 -1.7
184,536 - BACOVA_02418 0.24 -1.3
184,542 + BACOVA_02418 0.25 -1.5
184,543 - BACOVA_02418 0.25 -2.0
184,545 - BACOVA_02418 0.26 -4.5
184,883 + -0.7
184,883 + -3.8
184,917 + -2.0
184,918 - -2.2
184,973 + -3.3
184,973 + -2.2
185,004 + BACOVA_02419 0.14 -4.3
185,004 + BACOVA_02419 0.14 -2.7
185,004 + BACOVA_02419 0.14 -2.7
185,005 - BACOVA_02419 0.14 -0.4
185,007 - BACOVA_02419 0.15 -2.2
185,172 + BACOVA_02419 0.44 -0.4
185,195 + BACOVA_02419 0.48 -1.0
185,196 - BACOVA_02419 0.48 -2.1
185,196 - BACOVA_02419 0.48 -2.5
185,206 + BACOVA_02419 0.50 -1.6
185,219 + BACOVA_02419 0.52 -1.9
185,220 - BACOVA_02419 0.53 -1.9
185,220 - BACOVA_02419 0.53 -4.1
185,270 - BACOVA_02419 0.61 -1.9
185,270 - BACOVA_02419 0.61 -1.9
185,287 + BACOVA_02419 0.65 -2.7
185,287 + BACOVA_02419 0.65 -2.4
185,288 - BACOVA_02419 0.65 -1.4
185,326 + BACOVA_02419 0.71 -2.6
185,327 - BACOVA_02419 0.72 -2.3
185,327 - BACOVA_02419 0.72 -1.5
185,465 - -2.6
185,481 + -2.0
185,520 + -3.6
185,520 + -2.1
185,521 - -2.5
185,523 - -2.0
185,523 - -2.3
185,603 + -0.8
185,610 + -2.3
185,610 + -1.0
185,610 + -3.3
185,615 - -2.6
185,615 - -3.1
185,615 - -2.6
185,615 - -2.3
185,665 - BACOVA_02420 0.11 -2.0
185,786 + BACOVA_02420 0.19 -2.8
185,867 - BACOVA_02420 0.24 -2.4
185,867 - BACOVA_02420 0.24 -2.2
185,871 + BACOVA_02420 0.24 -3.9
185,906 - BACOVA_02420 0.27 -0.9
185,906 - BACOVA_02420 0.27 -1.8

Or see this region's nucleotide sequence