Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02298 and BACOVA_02299 overlap by 11 nucleotides BACOVA_02299 and BACOVA_02300 are separated by 24 nucleotides BACOVA_02300 and BACOVA_02301 are separated by 28 nucleotides BACOVA_02301 and BACOVA_02302 are separated by 25 nucleotides
BACOVA_02298: BACOVA_02298 - hypothetical protein, at 68,216 to 68,920
_02298
BACOVA_02299: BACOVA_02299 - hypothetical protein, at 68,910 to 69,587
_02299
BACOVA_02300: BACOVA_02300 - hypothetical protein, at 69,612 to 70,739
_02300
BACOVA_02301: BACOVA_02301 - conjugative transposon TraK protein, at 70,768 to 71,364
_02301
BACOVA_02302: BACOVA_02302 - hypothetical protein, at 71,390 to 71,881
_02302
Position (kb)
69
70
71 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 68.613 kb on - strand, within BACOVA_02298 at 68.615 kb on + strand, within BACOVA_02298 at 68.661 kb on - strand, within BACOVA_02298 at 68.661 kb on - strand, within BACOVA_02298 at 68.667 kb on + strand, within BACOVA_02298 at 68.667 kb on + strand, within BACOVA_02298 at 68.670 kb on - strand, within BACOVA_02298 at 68.772 kb on - strand, within BACOVA_02298 at 68.772 kb on - strand, within BACOVA_02298 at 68.835 kb on - strand, within BACOVA_02298 at 68.945 kb on + strand at 68.947 kb on + strand at 69.057 kb on + strand, within BACOVA_02299 at 69.058 kb on - strand, within BACOVA_02299 at 69.060 kb on + strand, within BACOVA_02299 at 69.060 kb on + strand, within BACOVA_02299 at 69.060 kb on + strand, within BACOVA_02299 at 69.060 kb on + strand, within BACOVA_02299 at 69.061 kb on - strand, within BACOVA_02299 at 69.161 kb on - strand, within BACOVA_02299 at 69.244 kb on + strand, within BACOVA_02299 at 69.244 kb on + strand, within BACOVA_02299 at 69.245 kb on - strand, within BACOVA_02299 at 69.303 kb on + strand, within BACOVA_02299 at 69.312 kb on + strand, within BACOVA_02299 at 69.332 kb on + strand, within BACOVA_02299 at 69.363 kb on + strand, within BACOVA_02299 at 69.453 kb on - strand, within BACOVA_02299 at 69.508 kb on - strand, within BACOVA_02299 at 69.582 kb on + strand at 69.585 kb on + strand at 69.594 kb on + strand at 69.611 kb on + strand at 69.619 kb on + strand at 69.623 kb on - strand at 69.627 kb on - strand at 69.640 kb on + strand at 69.641 kb on - strand at 69.641 kb on - strand at 69.641 kb on - strand at 69.778 kb on - strand, within BACOVA_02300 at 69.877 kb on + strand, within BACOVA_02300 at 70.092 kb on + strand, within BACOVA_02300 at 70.224 kb on + strand, within BACOVA_02300 at 70.225 kb on - strand, within BACOVA_02300 at 70.347 kb on + strand, within BACOVA_02300 at 70.381 kb on - strand, within BACOVA_02300 at 70.393 kb on - strand, within BACOVA_02300 at 70.393 kb on - strand, within BACOVA_02300 at 70.396 kb on - strand, within BACOVA_02300 at 70.414 kb on + strand, within BACOVA_02300 at 70.416 kb on + strand, within BACOVA_02300 at 70.417 kb on - strand, within BACOVA_02300 at 70.417 kb on - strand, within BACOVA_02300 at 70.417 kb on - strand, within BACOVA_02300 at 70.528 kb on - strand, within BACOVA_02300 at 70.539 kb on - strand, within BACOVA_02300 at 70.554 kb on + strand, within BACOVA_02300 at 70.742 kb on - strand at 70.775 kb on + strand at 70.776 kb on - strand at 70.906 kb on + strand, within BACOVA_02301 at 70.906 kb on + strand, within BACOVA_02301 at 70.906 kb on + strand, within BACOVA_02301 at 71.036 kb on - strand, within BACOVA_02301 at 71.037 kb on + strand, within BACOVA_02301 at 71.038 kb on - strand, within BACOVA_02301 at 71.065 kb on + strand, within BACOVA_02301 at 71.065 kb on + strand, within BACOVA_02301 at 71.135 kb on + strand, within BACOVA_02301 at 71.136 kb on - strand, within BACOVA_02301 at 71.210 kb on - strand, within BACOVA_02301 at 71.377 kb on + strand at 71.410 kb on - strand at 71.446 kb on - strand, within BACOVA_02302 at 71.612 kb on - strand, within BACOVA_02302 at 71.691 kb on + strand, within BACOVA_02302 at 71.692 kb on - strand, within BACOVA_02302
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 68,613 - BACOVA_02298 0.56 +1.1 68,615 + BACOVA_02298 0.57 -1.0 68,661 - BACOVA_02298 0.63 +0.3 68,661 - BACOVA_02298 0.63 -0.3 68,667 + BACOVA_02298 0.64 -0.4 68,667 + BACOVA_02298 0.64 -0.4 68,670 - BACOVA_02298 0.64 -0.1 68,772 - BACOVA_02298 0.79 -0.5 68,772 - BACOVA_02298 0.79 +0.0 68,835 - BACOVA_02298 0.88 -0.6 68,945 + -1.4 68,947 + -0.6 69,057 + BACOVA_02299 0.22 -0.4 69,058 - BACOVA_02299 0.22 -0.4 69,060 + BACOVA_02299 0.22 -1.0 69,060 + BACOVA_02299 0.22 +0.4 69,060 + BACOVA_02299 0.22 +0.9 69,060 + BACOVA_02299 0.22 +0.0 69,061 - BACOVA_02299 0.22 +0.6 69,161 - BACOVA_02299 0.37 +0.1 69,244 + BACOVA_02299 0.49 -0.5 69,244 + BACOVA_02299 0.49 -1.9 69,245 - BACOVA_02299 0.49 +1.2 69,303 + BACOVA_02299 0.58 -1.4 69,312 + BACOVA_02299 0.59 +1.7 69,332 + BACOVA_02299 0.62 -0.4 69,363 + BACOVA_02299 0.67 +1.0 69,453 - BACOVA_02299 0.80 -0.2 69,508 - BACOVA_02299 0.88 +0.6 69,582 + -0.5 69,585 + +0.6 69,594 + -2.4 69,611 + -0.4 69,619 + +1.2 69,623 - -1.3 69,627 - +0.6 69,640 + +1.6 69,641 - +0.1 69,641 - +1.1 69,641 - -0.4 69,778 - BACOVA_02300 0.15 -0.5 69,877 + BACOVA_02300 0.23 +0.3 70,092 + BACOVA_02300 0.43 +0.4 70,224 + BACOVA_02300 0.54 +0.5 70,225 - BACOVA_02300 0.54 -0.8 70,347 + BACOVA_02300 0.65 -0.0 70,381 - BACOVA_02300 0.68 -0.5 70,393 - BACOVA_02300 0.69 -0.9 70,393 - BACOVA_02300 0.69 -0.5 70,396 - BACOVA_02300 0.70 +0.0 70,414 + BACOVA_02300 0.71 -0.3 70,416 + BACOVA_02300 0.71 +0.4 70,417 - BACOVA_02300 0.71 -0.4 70,417 - BACOVA_02300 0.71 +0.1 70,417 - BACOVA_02300 0.71 +1.2 70,528 - BACOVA_02300 0.81 +0.6 70,539 - BACOVA_02300 0.82 -1.9 70,554 + BACOVA_02300 0.84 -0.5 70,742 - +0.1 70,775 + +0.4 70,776 - +2.0 70,906 + BACOVA_02301 0.23 -0.4 70,906 + BACOVA_02301 0.23 -0.3 70,906 + BACOVA_02301 0.23 -0.2 71,036 - BACOVA_02301 0.45 -0.3 71,037 + BACOVA_02301 0.45 -1.2 71,038 - BACOVA_02301 0.45 -0.8 71,065 + BACOVA_02301 0.50 -2.0 71,065 + BACOVA_02301 0.50 -0.8 71,135 + BACOVA_02301 0.61 -1.0 71,136 - BACOVA_02301 0.62 -1.1 71,210 - BACOVA_02301 0.74 +0.6 71,377 + +0.2 71,410 - -1.8 71,446 - BACOVA_02302 0.11 -0.7 71,612 - BACOVA_02302 0.45 +0.3 71,691 + BACOVA_02302 0.61 -0.6 71,692 - BACOVA_02302 0.61 -0.8
Or see this region's nucleotide sequence