Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02231 and BACOVA_02232 are separated by 200 nucleotides BACOVA_02232 and BACOVA_02233 are separated by 29 nucleotides BACOVA_02233 and BACOVA_02235 are separated by 154 nucleotides BACOVA_02235 and BACOVA_02234 overlap by 24 nucleotides BACOVA_02234 and BACOVA_02236 are separated by 7 nucleotides
BACOVA_02231: BACOVA_02231 - VirE N-terminal domain protein, at 13,838 to 14,431
_02231
BACOVA_02232: BACOVA_02232 - hypothetical protein, at 14,632 to 14,772
_02232
BACOVA_02233: BACOVA_02233 - hypothetical protein, at 14,802 to 14,906
_02233
BACOVA_02235: BACOVA_02235 - hypothetical protein, at 15,061 to 15,168
_02235
BACOVA_02234: BACOVA_02234 - positive regulator of sigma(E), RseC/MucC, at 15,145 to 15,570
_02234
BACOVA_02236: BACOVA_02236 - electron transport complex, RnfABCDGE type, B subunit, at 15,578 to 16,531
_02236
Position (kb) 15
16 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 14.078 kb on - strand, within BACOVA_02231 at 14.087 kb on + strand, within BACOVA_02231 at 14.096 kb on + strand, within BACOVA_02231 at 14.119 kb on + strand, within BACOVA_02231 at 14.120 kb on - strand, within BACOVA_02231 at 14.133 kb on - strand, within BACOVA_02231 at 14.168 kb on + strand, within BACOVA_02231 at 14.241 kb on + strand, within BACOVA_02231 at 14.242 kb on - strand, within BACOVA_02231 at 14.271 kb on - strand, within BACOVA_02231 at 14.271 kb on - strand, within BACOVA_02231 at 14.273 kb on - strand, within BACOVA_02231 at 14.273 kb on - strand, within BACOVA_02231 at 14.289 kb on - strand, within BACOVA_02231 at 14.326 kb on + strand, within BACOVA_02231 at 14.327 kb on - strand, within BACOVA_02231 at 14.327 kb on - strand, within BACOVA_02231 at 14.422 kb on + strand at 14.436 kb on + strand at 14.476 kb on + strand at 14.507 kb on + strand at 14.539 kb on + strand at 14.543 kb on - strand at 14.545 kb on + strand at 14.546 kb on - strand at 14.546 kb on - strand at 14.568 kb on + strand at 14.569 kb on - strand at 14.671 kb on + strand, within BACOVA_02232 at 14.671 kb on + strand, within BACOVA_02232 at 14.673 kb on + strand, within BACOVA_02232 at 14.673 kb on + strand, within BACOVA_02232 at 14.677 kb on - strand, within BACOVA_02232 at 14.713 kb on + strand, within BACOVA_02232 at 14.714 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.760 kb on - strand at 14.817 kb on + strand, within BACOVA_02233 at 14.872 kb on - strand, within BACOVA_02233 at 14.872 kb on - strand, within BACOVA_02233 at 14.883 kb on + strand, within BACOVA_02233 at 14.897 kb on - strand at 14.979 kb on + strand at 15.016 kb on - strand at 15.102 kb on + strand, within BACOVA_02235 at 15.157 kb on - strand at 15.160 kb on - strand at 15.162 kb on - strand at 15.162 kb on - strand at 15.188 kb on + strand, within BACOVA_02234 at 15.243 kb on + strand, within BACOVA_02234 at 15.291 kb on - strand, within BACOVA_02234 at 15.295 kb on - strand, within BACOVA_02234 at 15.300 kb on - strand, within BACOVA_02234 at 15.300 kb on - strand, within BACOVA_02234 at 15.300 kb on - strand, within BACOVA_02234 at 15.320 kb on - strand, within BACOVA_02234 at 15.405 kb on - strand, within BACOVA_02234 at 15.487 kb on - strand, within BACOVA_02234 at 15.493 kb on + strand, within BACOVA_02234 at 15.507 kb on - strand, within BACOVA_02234 at 15.507 kb on - strand, within BACOVA_02234 at 15.561 kb on - strand at 15.569 kb on - strand at 15.569 kb on - strand at 15.578 kb on - strand at 15.617 kb on - strand at 15.617 kb on - strand at 15.617 kb on - strand at 15.644 kb on + strand at 15.644 kb on + strand at 15.880 kb on - strand, within BACOVA_02236 at 15.889 kb on - strand, within BACOVA_02236 at 15.907 kb on + strand, within BACOVA_02236 at 15.908 kb on - strand, within BACOVA_02236 at 15.922 kb on + strand, within BACOVA_02236 at 15.972 kb on - strand, within BACOVA_02236 at 15.991 kb on + strand, within BACOVA_02236 at 15.992 kb on - strand, within BACOVA_02236 at 15.995 kb on + strand, within BACOVA_02236 at 16.097 kb on - strand, within BACOVA_02236
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 14,078 - BACOVA_02231 0.40 -0.6 14,087 + BACOVA_02231 0.42 -0.8 14,096 + BACOVA_02231 0.43 +0.6 14,119 + BACOVA_02231 0.47 +1.5 14,120 - BACOVA_02231 0.47 +0.1 14,133 - BACOVA_02231 0.50 -1.2 14,168 + BACOVA_02231 0.56 +1.0 14,241 + BACOVA_02231 0.68 -0.0 14,242 - BACOVA_02231 0.68 +0.7 14,271 - BACOVA_02231 0.73 -1.2 14,271 - BACOVA_02231 0.73 +0.3 14,273 - BACOVA_02231 0.73 -1.2 14,273 - BACOVA_02231 0.73 -1.2 14,289 - BACOVA_02231 0.76 +1.2 14,326 + BACOVA_02231 0.82 -0.9 14,327 - BACOVA_02231 0.82 +0.6 14,327 - BACOVA_02231 0.82 +1.4 14,422 + +0.6 14,436 + -0.6 14,476 + -1.7 14,507 + +0.4 14,539 + +1.7 14,543 - +0.1 14,545 + -1.6 14,546 - +0.0 14,546 - +0.7 14,568 + -1.1 14,569 - -0.1 14,671 + BACOVA_02232 0.28 -0.6 14,671 + BACOVA_02232 0.28 -0.2 14,673 + BACOVA_02232 0.29 +0.3 14,673 + BACOVA_02232 0.29 -0.2 14,677 - BACOVA_02232 0.32 +0.5 14,713 + BACOVA_02232 0.57 -1.0 14,714 - BACOVA_02232 0.58 -0.7 14,718 - BACOVA_02232 0.61 +1.1 14,718 - BACOVA_02232 0.61 +1.4 14,718 - BACOVA_02232 0.61 +1.6 14,718 - BACOVA_02232 0.61 -2.2 14,760 - -0.8 14,817 + BACOVA_02233 0.14 +0.5 14,872 - BACOVA_02233 0.67 -0.6 14,872 - BACOVA_02233 0.67 +0.1 14,883 + BACOVA_02233 0.77 -0.4 14,897 - -0.8 14,979 + +0.4 15,016 - -0.9 15,102 + BACOVA_02235 0.38 -1.7 15,157 - -2.9 15,160 - -3.6 15,162 - -1.6 15,162 - -1.4 15,188 + BACOVA_02234 0.10 -2.0 15,243 + BACOVA_02234 0.23 -2.2 15,291 - BACOVA_02234 0.34 -0.9 15,295 - BACOVA_02234 0.35 -1.5 15,300 - BACOVA_02234 0.36 -1.0 15,300 - BACOVA_02234 0.36 -0.8 15,300 - BACOVA_02234 0.36 -1.0 15,320 - BACOVA_02234 0.41 -1.4 15,405 - BACOVA_02234 0.61 -2.4 15,487 - BACOVA_02234 0.80 -1.8 15,493 + BACOVA_02234 0.82 -0.0 15,507 - BACOVA_02234 0.85 -1.1 15,507 - BACOVA_02234 0.85 -2.9 15,561 - -0.8 15,569 - -3.5 15,569 - -0.8 15,578 - -0.4 15,617 - -1.6 15,617 - -0.8 15,617 - -3.3 15,644 + +1.0 15,644 + -0.8 15,880 - BACOVA_02236 0.32 -0.2 15,889 - BACOVA_02236 0.33 -1.4 15,907 + BACOVA_02236 0.34 -1.4 15,908 - BACOVA_02236 0.35 -0.5 15,922 + BACOVA_02236 0.36 -0.0 15,972 - BACOVA_02236 0.41 -0.9 15,991 + BACOVA_02236 0.43 -0.0 15,992 - BACOVA_02236 0.43 -3.9 15,995 + BACOVA_02236 0.44 -0.0 16,097 - BACOVA_02236 0.54 -1.6
Or see this region's nucleotide sequence