Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02077 and BACOVA_02078 are separated by 83 nucleotides BACOVA_02078 and BACOVA_02079 are separated by 218 nucleotides BACOVA_02079 and BACOVA_02080 overlap by 20 nucleotides
BACOVA_02077: BACOVA_02077 - arginine--tRNA ligase, at 403,022 to 404,839
_02077
BACOVA_02078: BACOVA_02078 - DNA-binding protein HU, at 404,923 to 405,195
_02078
BACOVA_02079: BACOVA_02079 - peptidase, S54 family, at 405,414 to 406,091
_02079
BACOVA_02080: BACOVA_02080 - peptidase, S54 family, at 406,072 to 406,977
_02080
Position (kb) 404
405
406 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 404.849 kb on - strand at 404.915 kb on + strand at 404.919 kb on + strand at 404.920 kb on - strand at 404.920 kb on - strand at 404.920 kb on - strand at 404.920 kb on - strand at 404.920 kb on - strand at 404.924 kb on + strand at 404.924 kb on + strand at 404.925 kb on - strand at 404.925 kb on - strand at 404.942 kb on - strand at 404.964 kb on + strand, within BACOVA_02078 at 404.969 kb on - strand, within BACOVA_02078 at 404.977 kb on - strand, within BACOVA_02078 at 404.985 kb on + strand, within BACOVA_02078 at 404.988 kb on + strand, within BACOVA_02078 at 404.992 kb on - strand, within BACOVA_02078 at 404.992 kb on - strand, within BACOVA_02078 at 404.992 kb on - strand, within BACOVA_02078 at 405.015 kb on + strand, within BACOVA_02078 at 405.071 kb on - strand, within BACOVA_02078 at 405.096 kb on + strand, within BACOVA_02078 at 405.096 kb on + strand, within BACOVA_02078 at 405.189 kb on + strand at 405.190 kb on - strand at 405.190 kb on - strand at 405.198 kb on + strand at 405.199 kb on - strand at 405.216 kb on - strand at 405.219 kb on - strand at 405.220 kb on + strand at 405.223 kb on - strand at 405.223 kb on - strand at 405.223 kb on - strand at 405.286 kb on + strand at 405.287 kb on - strand at 405.334 kb on + strand at 405.334 kb on + strand at 405.391 kb on + strand at 405.409 kb on + strand at 405.431 kb on + strand at 405.454 kb on + strand at 405.457 kb on + strand at 405.567 kb on + strand, within BACOVA_02079 at 405.567 kb on + strand, within BACOVA_02079 at 405.569 kb on + strand, within BACOVA_02079 at 405.569 kb on + strand, within BACOVA_02079 at 405.608 kb on + strand, within BACOVA_02079 at 405.608 kb on + strand, within BACOVA_02079 at 405.680 kb on + strand, within BACOVA_02079 at 405.707 kb on + strand, within BACOVA_02079 at 405.726 kb on + strand, within BACOVA_02079 at 405.728 kb on + strand, within BACOVA_02079 at 405.776 kb on + strand, within BACOVA_02079 at 405.801 kb on + strand, within BACOVA_02079 at 405.866 kb on + strand, within BACOVA_02079 at 405.866 kb on + strand, within BACOVA_02079 at 405.942 kb on + strand, within BACOVA_02079 at 405.958 kb on + strand, within BACOVA_02079 at 405.958 kb on + strand, within BACOVA_02079 at 406.047 kb on + strand at 406.080 kb on + strand at 406.080 kb on + strand at 406.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 404,849 - +0.7 404,915 + -1.9 404,919 + -0.2 404,920 - -2.1 404,920 - -0.5 404,920 - -0.6 404,920 - -0.9 404,920 - -1.7 404,924 + -0.9 404,924 + -2.7 404,925 - -0.5 404,925 - -1.1 404,942 - -1.8 404,964 + BACOVA_02078 0.15 -0.9 404,969 - BACOVA_02078 0.17 -1.2 404,977 - BACOVA_02078 0.20 -2.5 404,985 + BACOVA_02078 0.23 -0.8 404,988 + BACOVA_02078 0.24 -1.7 404,992 - BACOVA_02078 0.25 -2.4 404,992 - BACOVA_02078 0.25 -2.4 404,992 - BACOVA_02078 0.25 -1.3 405,015 + BACOVA_02078 0.34 -0.6 405,071 - BACOVA_02078 0.54 -1.1 405,096 + BACOVA_02078 0.63 +0.1 405,096 + BACOVA_02078 0.63 -1.0 405,189 + -0.6 405,190 - -2.3 405,190 - -1.0 405,198 + -1.7 405,199 - -1.8 405,216 - -2.0 405,219 - -1.2 405,220 + -2.3 405,223 - -2.0 405,223 - -1.8 405,223 - -2.3 405,286 + -4.4 405,287 - -0.5 405,334 + -1.4 405,334 + -1.1 405,391 + +0.9 405,409 + -0.1 405,431 + +0.8 405,454 + +1.4 405,457 + -0.4 405,567 + BACOVA_02079 0.23 +1.0 405,567 + BACOVA_02079 0.23 -0.3 405,569 + BACOVA_02079 0.23 +1.2 405,569 + BACOVA_02079 0.23 +0.7 405,608 + BACOVA_02079 0.29 -0.1 405,608 + BACOVA_02079 0.29 +0.9 405,680 + BACOVA_02079 0.39 -1.2 405,707 + BACOVA_02079 0.43 +1.2 405,726 + BACOVA_02079 0.46 +0.3 405,728 + BACOVA_02079 0.46 -0.5 405,776 + BACOVA_02079 0.53 -0.6 405,801 + BACOVA_02079 0.57 -0.6 405,866 + BACOVA_02079 0.67 +0.7 405,866 + BACOVA_02079 0.67 -0.5 405,942 + BACOVA_02079 0.78 +1.5 405,958 + BACOVA_02079 0.80 +0.4 405,958 + BACOVA_02079 0.80 +0.2 406,047 + +0.2 406,080 + +2.2 406,080 + -0.4 406,140 + +0.4
Or see this region's nucleotide sequence