Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01729 and BACOVA_01730 are separated by 29 nucleotides BACOVA_01730 and BACOVA_01731 are separated by 151 nucleotides BACOVA_01731 and BACOVA_01732 overlap by 4 nucleotides BACOVA_01732 and BACOVA_01733 are separated by 34 nucleotides
BACOVA_01729: BACOVA_01729 - hypothetical protein, at 153,519 to 155,351
_01729
BACOVA_01730: BACOVA_01730 - VirE N-terminal domain protein, at 155,381 to 156,010
_01730
BACOVA_01731: BACOVA_01731 - hypothetical protein, at 156,162 to 156,311
_01731
BACOVA_01732: BACOVA_01732 - hypothetical protein, at 156,308 to 156,427
_01732
BACOVA_01733: BACOVA_01733 - hypothetical protein, at 156,462 to 157,868
_01733
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2 at 154.469 kb on + strand, within BACOVA_01729 at 154.469 kb on + strand, within BACOVA_01729 at 154.470 kb on - strand, within BACOVA_01729 at 154.497 kb on - strand, within BACOVA_01729 at 154.524 kb on - strand, within BACOVA_01729 at 154.599 kb on - strand, within BACOVA_01729 at 154.599 kb on - strand, within BACOVA_01729 at 154.599 kb on - strand, within BACOVA_01729 at 154.728 kb on + strand, within BACOVA_01729 at 154.728 kb on + strand, within BACOVA_01729 at 154.806 kb on + strand, within BACOVA_01729 at 154.807 kb on - strand, within BACOVA_01729 at 154.986 kb on - strand, within BACOVA_01729 at 154.986 kb on - strand, within BACOVA_01729 at 154.987 kb on + strand, within BACOVA_01729 at 154.987 kb on + strand, within BACOVA_01729 at 154.989 kb on + strand, within BACOVA_01729 at 154.990 kb on - strand, within BACOVA_01729 at 155.079 kb on + strand, within BACOVA_01729 at 155.080 kb on - strand, within BACOVA_01729 at 155.142 kb on - strand, within BACOVA_01729 at 155.183 kb on - strand at 155.266 kb on - strand at 155.270 kb on - strand at 155.279 kb on - strand at 155.331 kb on + strand at 155.364 kb on + strand at 155.371 kb on + strand at 155.378 kb on + strand at 155.460 kb on - strand, within BACOVA_01730 at 155.506 kb on - strand, within BACOVA_01730 at 155.521 kb on - strand, within BACOVA_01730 at 155.540 kb on - strand, within BACOVA_01730 at 155.586 kb on + strand, within BACOVA_01730 at 155.636 kb on + strand, within BACOVA_01730 at 155.681 kb on + strand, within BACOVA_01730 at 155.695 kb on - strand, within BACOVA_01730 at 155.695 kb on - strand, within BACOVA_01730 at 155.717 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.820 kb on - strand, within BACOVA_01730 at 155.920 kb on + strand, within BACOVA_01730 at 155.936 kb on - strand, within BACOVA_01730 at 155.985 kb on + strand at 155.986 kb on - strand at 156.011 kb on - strand at 156.021 kb on - strand at 156.021 kb on - strand at 156.095 kb on + strand at 156.222 kb on - strand, within BACOVA_01731 at 156.229 kb on + strand, within BACOVA_01731 at 156.242 kb on + strand, within BACOVA_01731 at 156.242 kb on + strand, within BACOVA_01731 at 156.248 kb on + strand, within BACOVA_01731 at 156.257 kb on - strand, within BACOVA_01731 at 156.260 kb on + strand, within BACOVA_01731 at 156.260 kb on + strand, within BACOVA_01731 at 156.261 kb on - strand, within BACOVA_01731 at 156.261 kb on - strand, within BACOVA_01731 at 156.276 kb on + strand, within BACOVA_01731 at 156.320 kb on - strand, within BACOVA_01732 at 156.408 kb on - strand, within BACOVA_01732 at 156.408 kb on - strand, within BACOVA_01732 at 156.426 kb on - strand at 156.482 kb on + strand at 156.485 kb on + strand at 156.494 kb on - strand at 156.535 kb on + strand at 156.586 kb on - strand at 156.586 kb on - strand at 156.593 kb on - strand at 156.593 kb on - strand at 156.625 kb on + strand, within BACOVA_01733 at 156.626 kb on - strand, within BACOVA_01733 at 156.626 kb on - strand, within BACOVA_01733 at 156.630 kb on + strand, within BACOVA_01733 at 156.630 kb on + strand, within BACOVA_01733 at 156.737 kb on - strand, within BACOVA_01733 at 156.737 kb on - strand, within BACOVA_01733 at 156.895 kb on + strand, within BACOVA_01733 at 156.973 kb on + strand, within BACOVA_01733
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 154,469 + BACOVA_01729 0.52 +0.4 154,469 + BACOVA_01729 0.52 -0.1 154,470 - BACOVA_01729 0.52 +0.8 154,497 - BACOVA_01729 0.53 -0.5 154,524 - BACOVA_01729 0.55 -1.4 154,599 - BACOVA_01729 0.59 +0.6 154,599 - BACOVA_01729 0.59 -0.1 154,599 - BACOVA_01729 0.59 -2.2 154,728 + BACOVA_01729 0.66 -0.5 154,728 + BACOVA_01729 0.66 +0.4 154,806 + BACOVA_01729 0.70 -0.0 154,807 - BACOVA_01729 0.70 +0.9 154,986 - BACOVA_01729 0.80 -0.1 154,986 - BACOVA_01729 0.80 -0.5 154,987 + BACOVA_01729 0.80 +0.3 154,987 + BACOVA_01729 0.80 +0.1 154,989 + BACOVA_01729 0.80 -1.5 154,990 - BACOVA_01729 0.80 +0.1 155,079 + BACOVA_01729 0.85 -1.0 155,080 - BACOVA_01729 0.85 -2.5 155,142 - BACOVA_01729 0.89 -0.4 155,183 - +0.2 155,266 - +0.2 155,270 - -0.6 155,279 - +0.1 155,331 + -1.9 155,364 + +1.0 155,371 + -0.0 155,378 + -0.0 155,460 - BACOVA_01730 0.13 -0.9 155,506 - BACOVA_01730 0.20 +1.2 155,521 - BACOVA_01730 0.22 +1.4 155,540 - BACOVA_01730 0.25 -1.0 155,586 + BACOVA_01730 0.33 +0.7 155,636 + BACOVA_01730 0.40 +0.2 155,681 + BACOVA_01730 0.48 +1.0 155,695 - BACOVA_01730 0.50 +0.4 155,695 - BACOVA_01730 0.50 +1.7 155,717 - BACOVA_01730 0.53 +1.1 155,791 - BACOVA_01730 0.65 +0.5 155,791 - BACOVA_01730 0.65 -0.3 155,791 - BACOVA_01730 0.65 +0.3 155,820 - BACOVA_01730 0.70 -0.8 155,920 + BACOVA_01730 0.86 -0.0 155,936 - BACOVA_01730 0.88 -0.0 155,985 + -1.2 155,986 - -1.5 156,011 - +0.1 156,021 - +0.3 156,021 - -0.1 156,095 + -0.7 156,222 - BACOVA_01731 0.40 +1.3 156,229 + BACOVA_01731 0.45 +2.4 156,242 + BACOVA_01731 0.53 +1.5 156,242 + BACOVA_01731 0.53 +0.9 156,248 + BACOVA_01731 0.57 +1.7 156,257 - BACOVA_01731 0.63 -0.3 156,260 + BACOVA_01731 0.65 +1.0 156,260 + BACOVA_01731 0.65 -0.6 156,261 - BACOVA_01731 0.66 -0.1 156,261 - BACOVA_01731 0.66 -0.4 156,276 + BACOVA_01731 0.76 -0.3 156,320 - BACOVA_01732 0.10 -0.5 156,408 - BACOVA_01732 0.83 -0.3 156,408 - BACOVA_01732 0.83 -1.7 156,426 - +0.2 156,482 + +0.0 156,485 + -1.0 156,494 - +1.6 156,535 + -1.0 156,586 - -0.4 156,586 - -0.6 156,593 - -0.4 156,593 - +0.6 156,625 + BACOVA_01733 0.12 -1.9 156,626 - BACOVA_01733 0.12 -1.5 156,626 - BACOVA_01733 0.12 +0.2 156,630 + BACOVA_01733 0.12 -0.4 156,630 + BACOVA_01733 0.12 -1.5 156,737 - BACOVA_01733 0.20 -1.2 156,737 - BACOVA_01733 0.20 +0.2 156,895 + BACOVA_01733 0.31 -0.3 156,973 + BACOVA_01733 0.36 -0.5
Or see this region's nucleotide sequence