Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01727 and BACOVA_01728 are separated by 220 nucleotides BACOVA_01728 and BACOVA_01729 are separated by 133 nucleotides BACOVA_01729 and BACOVA_01730 are separated by 29 nucleotides BACOVA_01730 and BACOVA_01731 are separated by 151 nucleotides BACOVA_01731 and BACOVA_01732 overlap by 4 nucleotides
BACOVA_01727: BACOVA_01727 - putative DNA-binding protein, at 152,458 to 152,946
_01727
BACOVA_01728: BACOVA_01728 - hypothetical protein, at 153,167 to 153,385
_01728
BACOVA_01729: BACOVA_01729 - hypothetical protein, at 153,519 to 155,351
_01729
BACOVA_01730: BACOVA_01730 - VirE N-terminal domain protein, at 155,381 to 156,010
_01730
BACOVA_01731: BACOVA_01731 - hypothetical protein, at 156,162 to 156,311
_01731
BACOVA_01732: BACOVA_01732 - hypothetical protein, at 156,308 to 156,427
_01732
Position (kb) 153
154
155
156 Strain fitness (log2 ratio) -2
-1
0
1
2 at 152.637 kb on + strand, within BACOVA_01727 at 152.770 kb on + strand, within BACOVA_01727 at 153.184 kb on - strand at 153.191 kb on + strand, within BACOVA_01728 at 153.309 kb on + strand, within BACOVA_01728 at 153.309 kb on + strand, within BACOVA_01728 at 153.309 kb on + strand, within BACOVA_01728 at 153.363 kb on + strand, within BACOVA_01728 at 153.363 kb on + strand, within BACOVA_01728 at 153.383 kb on + strand at 153.412 kb on + strand at 153.428 kb on - strand at 153.443 kb on + strand at 153.443 kb on + strand at 153.457 kb on - strand at 153.486 kb on - strand at 153.486 kb on - strand at 153.569 kb on - strand at 153.608 kb on + strand at 153.608 kb on + strand at 153.751 kb on - strand, within BACOVA_01729 at 153.755 kb on + strand, within BACOVA_01729 at 153.945 kb on + strand, within BACOVA_01729 at 153.946 kb on - strand, within BACOVA_01729 at 153.946 kb on - strand, within BACOVA_01729 at 153.968 kb on + strand, within BACOVA_01729 at 153.977 kb on + strand, within BACOVA_01729 at 154.152 kb on + strand, within BACOVA_01729 at 154.152 kb on + strand, within BACOVA_01729 at 154.152 kb on + strand, within BACOVA_01729 at 154.152 kb on + strand, within BACOVA_01729 at 154.153 kb on - strand, within BACOVA_01729 at 154.153 kb on - strand, within BACOVA_01729 at 154.153 kb on - strand, within BACOVA_01729 at 154.215 kb on + strand, within BACOVA_01729 at 154.216 kb on - strand, within BACOVA_01729 at 154.216 kb on - strand, within BACOVA_01729 at 154.216 kb on - strand, within BACOVA_01729 at 154.226 kb on + strand, within BACOVA_01729 at 154.227 kb on - strand, within BACOVA_01729 at 154.227 kb on - strand, within BACOVA_01729 at 154.227 kb on - strand, within BACOVA_01729 at 154.232 kb on - strand, within BACOVA_01729 at 154.469 kb on + strand, within BACOVA_01729 at 154.469 kb on + strand, within BACOVA_01729 at 154.470 kb on - strand, within BACOVA_01729 at 154.497 kb on - strand, within BACOVA_01729 at 154.524 kb on - strand, within BACOVA_01729 at 154.599 kb on - strand, within BACOVA_01729 at 154.599 kb on - strand, within BACOVA_01729 at 154.599 kb on - strand, within BACOVA_01729 at 154.728 kb on + strand, within BACOVA_01729 at 154.728 kb on + strand, within BACOVA_01729 at 154.806 kb on + strand, within BACOVA_01729 at 154.807 kb on - strand, within BACOVA_01729 at 154.986 kb on - strand, within BACOVA_01729 at 154.986 kb on - strand, within BACOVA_01729 at 154.987 kb on + strand, within BACOVA_01729 at 154.987 kb on + strand, within BACOVA_01729 at 154.989 kb on + strand, within BACOVA_01729 at 154.990 kb on - strand, within BACOVA_01729 at 155.079 kb on + strand, within BACOVA_01729 at 155.080 kb on - strand, within BACOVA_01729 at 155.142 kb on - strand, within BACOVA_01729 at 155.183 kb on - strand at 155.266 kb on - strand at 155.270 kb on - strand at 155.279 kb on - strand at 155.331 kb on + strand at 155.364 kb on + strand at 155.371 kb on + strand at 155.378 kb on + strand at 155.460 kb on - strand, within BACOVA_01730 at 155.506 kb on - strand, within BACOVA_01730 at 155.521 kb on - strand, within BACOVA_01730 at 155.540 kb on - strand, within BACOVA_01730 at 155.586 kb on + strand, within BACOVA_01730 at 155.636 kb on + strand, within BACOVA_01730 at 155.681 kb on + strand, within BACOVA_01730 at 155.695 kb on - strand, within BACOVA_01730 at 155.695 kb on - strand, within BACOVA_01730 at 155.717 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.820 kb on - strand, within BACOVA_01730 at 155.920 kb on + strand, within BACOVA_01730 at 155.936 kb on - strand, within BACOVA_01730 at 155.985 kb on + strand at 155.986 kb on - strand at 156.011 kb on - strand at 156.021 kb on - strand at 156.021 kb on - strand at 156.095 kb on + strand at 156.222 kb on - strand, within BACOVA_01731 at 156.229 kb on + strand, within BACOVA_01731 at 156.242 kb on + strand, within BACOVA_01731 at 156.242 kb on + strand, within BACOVA_01731 at 156.248 kb on + strand, within BACOVA_01731 at 156.257 kb on - strand, within BACOVA_01731 at 156.260 kb on + strand, within BACOVA_01731 at 156.260 kb on + strand, within BACOVA_01731 at 156.261 kb on - strand, within BACOVA_01731 at 156.261 kb on - strand, within BACOVA_01731 at 156.276 kb on + strand, within BACOVA_01731 at 156.320 kb on - strand, within BACOVA_01732
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 152,637 + BACOVA_01727 0.37 +1.6 152,770 + BACOVA_01727 0.64 +0.9 153,184 - +0.7 153,191 + BACOVA_01728 0.11 +0.6 153,309 + BACOVA_01728 0.65 +0.5 153,309 + BACOVA_01728 0.65 +0.4 153,309 + BACOVA_01728 0.65 +0.9 153,363 + BACOVA_01728 0.89 +0.2 153,363 + BACOVA_01728 0.89 -0.5 153,383 + +0.7 153,412 + -0.5 153,428 - -1.9 153,443 + -0.7 153,443 + +1.0 153,457 - -0.1 153,486 - +0.1 153,486 - -0.2 153,569 - -1.9 153,608 + -0.7 153,608 + -0.4 153,751 - BACOVA_01729 0.13 -0.8 153,755 + BACOVA_01729 0.13 -1.1 153,945 + BACOVA_01729 0.23 -0.6 153,946 - BACOVA_01729 0.23 +0.3 153,946 - BACOVA_01729 0.23 +0.9 153,968 + BACOVA_01729 0.24 -0.6 153,977 + BACOVA_01729 0.25 -0.9 154,152 + BACOVA_01729 0.35 -0.4 154,152 + BACOVA_01729 0.35 -0.0 154,152 + BACOVA_01729 0.35 +0.5 154,152 + BACOVA_01729 0.35 +0.3 154,153 - BACOVA_01729 0.35 +0.2 154,153 - BACOVA_01729 0.35 -1.5 154,153 - BACOVA_01729 0.35 +1.2 154,215 + BACOVA_01729 0.38 -0.2 154,216 - BACOVA_01729 0.38 -0.3 154,216 - BACOVA_01729 0.38 +0.9 154,216 - BACOVA_01729 0.38 +0.0 154,226 + BACOVA_01729 0.39 +2.0 154,227 - BACOVA_01729 0.39 -1.3 154,227 - BACOVA_01729 0.39 -0.3 154,227 - BACOVA_01729 0.39 -1.0 154,232 - BACOVA_01729 0.39 -0.3 154,469 + BACOVA_01729 0.52 +0.4 154,469 + BACOVA_01729 0.52 -0.1 154,470 - BACOVA_01729 0.52 +0.8 154,497 - BACOVA_01729 0.53 -0.5 154,524 - BACOVA_01729 0.55 -1.4 154,599 - BACOVA_01729 0.59 +0.6 154,599 - BACOVA_01729 0.59 -0.1 154,599 - BACOVA_01729 0.59 -2.2 154,728 + BACOVA_01729 0.66 -0.5 154,728 + BACOVA_01729 0.66 +0.4 154,806 + BACOVA_01729 0.70 -0.0 154,807 - BACOVA_01729 0.70 +0.9 154,986 - BACOVA_01729 0.80 -0.1 154,986 - BACOVA_01729 0.80 -0.5 154,987 + BACOVA_01729 0.80 +0.3 154,987 + BACOVA_01729 0.80 +0.1 154,989 + BACOVA_01729 0.80 -1.5 154,990 - BACOVA_01729 0.80 +0.1 155,079 + BACOVA_01729 0.85 -1.0 155,080 - BACOVA_01729 0.85 -2.5 155,142 - BACOVA_01729 0.89 -0.4 155,183 - +0.2 155,266 - +0.2 155,270 - -0.6 155,279 - +0.1 155,331 + -1.9 155,364 + +1.0 155,371 + -0.0 155,378 + -0.0 155,460 - BACOVA_01730 0.13 -0.9 155,506 - BACOVA_01730 0.20 +1.2 155,521 - BACOVA_01730 0.22 +1.4 155,540 - BACOVA_01730 0.25 -1.0 155,586 + BACOVA_01730 0.33 +0.7 155,636 + BACOVA_01730 0.40 +0.2 155,681 + BACOVA_01730 0.48 +1.0 155,695 - BACOVA_01730 0.50 +0.4 155,695 - BACOVA_01730 0.50 +1.7 155,717 - BACOVA_01730 0.53 +1.1 155,791 - BACOVA_01730 0.65 +0.5 155,791 - BACOVA_01730 0.65 -0.3 155,791 - BACOVA_01730 0.65 +0.3 155,820 - BACOVA_01730 0.70 -0.8 155,920 + BACOVA_01730 0.86 -0.0 155,936 - BACOVA_01730 0.88 -0.0 155,985 + -1.2 155,986 - -1.5 156,011 - +0.1 156,021 - +0.3 156,021 - -0.1 156,095 + -0.7 156,222 - BACOVA_01731 0.40 +1.3 156,229 + BACOVA_01731 0.45 +2.4 156,242 + BACOVA_01731 0.53 +1.5 156,242 + BACOVA_01731 0.53 +0.9 156,248 + BACOVA_01731 0.57 +1.7 156,257 - BACOVA_01731 0.63 -0.3 156,260 + BACOVA_01731 0.65 +1.0 156,260 + BACOVA_01731 0.65 -0.6 156,261 - BACOVA_01731 0.66 -0.1 156,261 - BACOVA_01731 0.66 -0.4 156,276 + BACOVA_01731 0.76 -0.3 156,320 - BACOVA_01732 0.10 -0.5
Or see this region's nucleotide sequence