Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01164 and BACOVA_01165 overlap by 8 nucleotides BACOVA_01165 and BACOVA_01166 are separated by 157 nucleotides BACOVA_01166 and BACOVA_01167 overlap by 4 nucleotides BACOVA_01167 and BACOVA_01169 are separated by 23 nucleotides
BACOVA_01164: BACOVA_01164 - ATP-dependent DNA helicase, RecQ family, at 118,982 to 120,892
_01164
BACOVA_01165: BACOVA_01165 - single-stranded-DNA-specific exonuclease RecJ, at 120,885 to 122,651
_01165
BACOVA_01166: BACOVA_01166 - hypothetical protein, at 122,809 to 123,039
_01166
BACOVA_01167: BACOVA_01167 - hypothetical protein, at 123,036 to 123,491
_01167
BACOVA_01169: BACOVA_01169 - hypothetical protein, at 123,515 to 123,739
_01169
Position (kb) 120
121
122
123 Strain fitness (log2 ratio) -2
-1
0
1
2 at 120.883 kb on - strand at 122.609 kb on - strand at 122.728 kb on + strand at 122.746 kb on + strand at 122.774 kb on + strand at 122.814 kb on + strand at 122.815 kb on - strand at 122.876 kb on + strand, within BACOVA_01166 at 122.877 kb on - strand, within BACOVA_01166 at 122.877 kb on - strand, within BACOVA_01166 at 122.925 kb on - strand, within BACOVA_01166 at 122.927 kb on + strand, within BACOVA_01166 at 122.953 kb on - strand, within BACOVA_01166 at 122.953 kb on - strand, within BACOVA_01166 at 122.954 kb on + strand, within BACOVA_01166 at 122.954 kb on + strand, within BACOVA_01166 at 122.955 kb on - strand, within BACOVA_01166 at 122.955 kb on - strand, within BACOVA_01166 at 122.974 kb on + strand, within BACOVA_01166 at 122.975 kb on - strand, within BACOVA_01166 at 122.975 kb on - strand, within BACOVA_01166 at 122.981 kb on - strand, within BACOVA_01166 at 122.981 kb on - strand, within BACOVA_01166 at 123.009 kb on + strand, within BACOVA_01166 at 123.009 kb on + strand, within BACOVA_01166 at 123.009 kb on + strand, within BACOVA_01166 at 123.010 kb on - strand, within BACOVA_01166 at 123.024 kb on + strand at 123.052 kb on + strand at 123.082 kb on + strand, within BACOVA_01167 at 123.082 kb on + strand, within BACOVA_01167 at 123.082 kb on + strand, within BACOVA_01167 at 123.087 kb on + strand, within BACOVA_01167 at 123.087 kb on + strand, within BACOVA_01167 at 123.088 kb on - strand, within BACOVA_01167 at 123.088 kb on - strand, within BACOVA_01167 at 123.112 kb on - strand, within BACOVA_01167 at 123.112 kb on - strand, within BACOVA_01167 at 123.154 kb on + strand, within BACOVA_01167 at 123.169 kb on + strand, within BACOVA_01167 at 123.169 kb on + strand, within BACOVA_01167 at 123.192 kb on - strand, within BACOVA_01167 at 123.204 kb on + strand, within BACOVA_01167 at 123.205 kb on - strand, within BACOVA_01167 at 123.207 kb on - strand, within BACOVA_01167 at 123.207 kb on - strand, within BACOVA_01167 at 123.212 kb on - strand, within BACOVA_01167 at 123.212 kb on - strand, within BACOVA_01167 at 123.253 kb on - strand, within BACOVA_01167 at 123.281 kb on - strand, within BACOVA_01167 at 123.281 kb on - strand, within BACOVA_01167 at 123.319 kb on - strand, within BACOVA_01167 at 123.322 kb on - strand, within BACOVA_01167 at 123.468 kb on + strand at 123.505 kb on + strand at 123.505 kb on + strand at 123.508 kb on - strand at 123.508 kb on - strand at 123.516 kb on + strand at 123.536 kb on - strand at 123.563 kb on - strand, within BACOVA_01169
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 120,883 - -0.4 122,609 - +0.0 122,728 + +0.3 122,746 + +0.5 122,774 + +0.3 122,814 + -0.4 122,815 - -1.0 122,876 + BACOVA_01166 0.29 +0.8 122,877 - BACOVA_01166 0.29 -0.7 122,877 - BACOVA_01166 0.29 -0.5 122,925 - BACOVA_01166 0.50 -0.7 122,927 + BACOVA_01166 0.51 -0.8 122,953 - BACOVA_01166 0.62 -0.4 122,953 - BACOVA_01166 0.62 -0.8 122,954 + BACOVA_01166 0.63 +0.4 122,954 + BACOVA_01166 0.63 +2.2 122,955 - BACOVA_01166 0.63 +0.3 122,955 - BACOVA_01166 0.63 -1.8 122,974 + BACOVA_01166 0.71 +0.6 122,975 - BACOVA_01166 0.72 -0.3 122,975 - BACOVA_01166 0.72 -0.8 122,981 - BACOVA_01166 0.74 -1.1 122,981 - BACOVA_01166 0.74 -0.4 123,009 + BACOVA_01166 0.87 +0.4 123,009 + BACOVA_01166 0.87 +0.0 123,009 + BACOVA_01166 0.87 -0.2 123,010 - BACOVA_01166 0.87 -0.4 123,024 + -0.5 123,052 + +0.5 123,082 + BACOVA_01167 0.10 -0.7 123,082 + BACOVA_01167 0.10 +1.0 123,082 + BACOVA_01167 0.10 +0.5 123,087 + BACOVA_01167 0.11 -0.3 123,087 + BACOVA_01167 0.11 -1.0 123,088 - BACOVA_01167 0.11 +0.0 123,088 - BACOVA_01167 0.11 -0.3 123,112 - BACOVA_01167 0.17 +0.1 123,112 - BACOVA_01167 0.17 -0.7 123,154 + BACOVA_01167 0.26 -0.2 123,169 + BACOVA_01167 0.29 -1.8 123,169 + BACOVA_01167 0.29 -0.5 123,192 - BACOVA_01167 0.34 -0.3 123,204 + BACOVA_01167 0.37 -0.6 123,205 - BACOVA_01167 0.37 -0.6 123,207 - BACOVA_01167 0.38 +0.2 123,207 - BACOVA_01167 0.38 -0.1 123,212 - BACOVA_01167 0.39 +0.4 123,212 - BACOVA_01167 0.39 -0.9 123,253 - BACOVA_01167 0.48 -2.4 123,281 - BACOVA_01167 0.54 +0.5 123,281 - BACOVA_01167 0.54 -1.1 123,319 - BACOVA_01167 0.62 -0.6 123,322 - BACOVA_01167 0.63 -0.1 123,468 + -0.6 123,505 + -0.6 123,505 + +0.2 123,508 - -0.3 123,508 - -1.0 123,516 + -0.2 123,536 - -0.0 123,563 - BACOVA_01169 0.21 +0.3
Or see this region's nucleotide sequence