Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00669 and BACOVA_00670 overlap by 4 nucleotides BACOVA_00670 and BACOVA_00671 are separated by 58 nucleotides BACOVA_00671 and BACOVA_00672 overlap by 4 nucleotides BACOVA_00672 and BACOVA_00673 are separated by 39 nucleotides
BACOVA_00669: BACOVA_00669 - Sigma-70 region 2, at 30,259 to 30,810
_00669
BACOVA_00670: BACOVA_00670 - hypothetical protein, at 30,807 to 31,586
_00670
BACOVA_00671: BACOVA_00671 - NOL1/NOP2/sun family protein, at 31,645 to 33,159
_00671
BACOVA_00672: BACOVA_00672 - hypothetical protein, at 33,156 to 33,959
_00672
BACOVA_00673: BACOVA_00673 - hypothetical protein, at 33,999 to 34,157
_00673
Position (kb) 31
32
33
34 Strain fitness (log2 ratio) -2
-1
0
1
2 at 30.649 kb on - strand, within BACOVA_00669 at 30.649 kb on - strand, within BACOVA_00669 at 30.726 kb on - strand, within BACOVA_00669 at 30.790 kb on + strand at 30.790 kb on + strand at 30.790 kb on + strand at 30.791 kb on - strand at 30.792 kb on + strand at 30.793 kb on - strand at 30.812 kb on + strand at 30.812 kb on + strand at 30.813 kb on - strand at 30.884 kb on + strand at 30.894 kb on - strand, within BACOVA_00670 at 30.924 kb on - strand, within BACOVA_00670 at 30.924 kb on - strand, within BACOVA_00670 at 30.933 kb on - strand, within BACOVA_00670 at 31.007 kb on + strand, within BACOVA_00670 at 31.304 kb on + strand, within BACOVA_00670 at 31.373 kb on + strand, within BACOVA_00670 at 31.374 kb on - strand, within BACOVA_00670 at 31.374 kb on - strand, within BACOVA_00670 at 31.448 kb on + strand, within BACOVA_00670 at 31.466 kb on + strand, within BACOVA_00670 at 31.467 kb on - strand, within BACOVA_00670 at 31.554 kb on + strand at 31.572 kb on + strand at 31.621 kb on - strand at 31.626 kb on + strand at 31.627 kb on - strand at 31.630 kb on + strand at 31.633 kb on + strand at 31.634 kb on - strand at 31.638 kb on + strand at 31.639 kb on - strand at 31.639 kb on - strand at 31.639 kb on - strand at 31.661 kb on + strand at 31.683 kb on + strand at 31.724 kb on - strand at 31.867 kb on + strand, within BACOVA_00671 at 31.904 kb on + strand, within BACOVA_00671 at 31.925 kb on - strand, within BACOVA_00671 at 31.973 kb on - strand, within BACOVA_00671 at 32.045 kb on + strand, within BACOVA_00671 at 32.045 kb on + strand, within BACOVA_00671 at 32.181 kb on - strand, within BACOVA_00671 at 32.232 kb on + strand, within BACOVA_00671 at 32.232 kb on + strand, within BACOVA_00671 at 32.233 kb on - strand, within BACOVA_00671 at 32.322 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.357 kb on + strand, within BACOVA_00671 at 32.357 kb on + strand, within BACOVA_00671 at 32.361 kb on + strand, within BACOVA_00671 at 32.361 kb on + strand, within BACOVA_00671 at 32.361 kb on + strand, within BACOVA_00671 at 32.362 kb on - strand, within BACOVA_00671 at 32.364 kb on + strand, within BACOVA_00671 at 32.365 kb on - strand, within BACOVA_00671 at 32.376 kb on + strand, within BACOVA_00671 at 32.439 kb on - strand, within BACOVA_00671 at 32.468 kb on + strand, within BACOVA_00671 at 32.541 kb on + strand, within BACOVA_00671 at 32.609 kb on + strand, within BACOVA_00671 at 32.785 kb on + strand, within BACOVA_00671 at 32.786 kb on - strand, within BACOVA_00671 at 32.787 kb on + strand, within BACOVA_00671 at 32.787 kb on + strand, within BACOVA_00671 at 32.898 kb on + strand, within BACOVA_00671 at 32.940 kb on - strand, within BACOVA_00671 at 32.962 kb on + strand, within BACOVA_00671 at 32.982 kb on + strand, within BACOVA_00671 at 32.983 kb on - strand, within BACOVA_00671 at 32.983 kb on - strand, within BACOVA_00671 at 32.988 kb on - strand, within BACOVA_00671 at 33.033 kb on + strand at 33.034 kb on - strand at 33.034 kb on - strand at 33.113 kb on - strand at 33.113 kb on - strand at 33.113 kb on - strand at 33.131 kb on - strand at 33.145 kb on + strand at 33.145 kb on + strand at 33.145 kb on + strand at 33.157 kb on + strand at 33.256 kb on + strand, within BACOVA_00672 at 33.256 kb on + strand, within BACOVA_00672 at 33.257 kb on - strand, within BACOVA_00672 at 33.350 kb on - strand, within BACOVA_00672 at 33.364 kb on - strand, within BACOVA_00672 at 33.366 kb on + strand, within BACOVA_00672 at 33.367 kb on - strand, within BACOVA_00672 at 33.399 kb on - strand, within BACOVA_00672 at 33.420 kb on + strand, within BACOVA_00672 at 33.420 kb on + strand, within BACOVA_00672 at 33.604 kb on - strand, within BACOVA_00672 at 33.604 kb on - strand, within BACOVA_00672 at 33.616 kb on + strand, within BACOVA_00672 at 33.616 kb on + strand, within BACOVA_00672 at 33.617 kb on - strand, within BACOVA_00672 at 33.617 kb on - strand, within BACOVA_00672 at 33.624 kb on + strand, within BACOVA_00672 at 33.647 kb on + strand, within BACOVA_00672 at 33.667 kb on - strand, within BACOVA_00672 at 33.709 kb on + strand, within BACOVA_00672 at 33.710 kb on - strand, within BACOVA_00672 at 33.740 kb on - strand, within BACOVA_00672 at 33.740 kb on - strand, within BACOVA_00672 at 33.746 kb on + strand, within BACOVA_00672 at 33.747 kb on - strand, within BACOVA_00672 at 33.760 kb on - strand, within BACOVA_00672 at 33.823 kb on + strand, within BACOVA_00672 at 33.824 kb on - strand, within BACOVA_00672 at 33.824 kb on - strand, within BACOVA_00672 at 33.853 kb on + strand, within BACOVA_00672 at 33.873 kb on + strand, within BACOVA_00672 at 33.874 kb on - strand, within BACOVA_00672 at 33.933 kb on + strand at 33.933 kb on + strand at 33.934 kb on - strand at 33.941 kb on + strand at 33.954 kb on + strand at 33.963 kb on + strand at 33.986 kb on + strand at 33.987 kb on - strand at 34.015 kb on + strand, within BACOVA_00673 at 34.016 kb on - strand, within BACOVA_00673 at 34.020 kb on + strand, within BACOVA_00673 at 34.021 kb on - strand, within BACOVA_00673 at 34.033 kb on + strand, within BACOVA_00673 at 34.069 kb on + strand, within BACOVA_00673 at 34.070 kb on - strand, within BACOVA_00673 at 34.070 kb on - strand, within BACOVA_00673 at 34.107 kb on + strand, within BACOVA_00673 at 34.108 kb on - strand, within BACOVA_00673 at 34.109 kb on + strand, within BACOVA_00673 at 34.109 kb on + strand, within BACOVA_00673 at 34.110 kb on - strand, within BACOVA_00673 at 34.114 kb on - strand, within BACOVA_00673 at 34.114 kb on - strand, within BACOVA_00673 at 34.122 kb on - strand, within BACOVA_00673 at 34.122 kb on - strand, within BACOVA_00673 at 34.124 kb on + strand, within BACOVA_00673 at 34.125 kb on - strand, within BACOVA_00673 at 34.125 kb on - strand, within BACOVA_00673
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 30,649 - BACOVA_00669 0.71 +0.6 30,649 - BACOVA_00669 0.71 -0.0 30,726 - BACOVA_00669 0.85 -0.2 30,790 + -0.0 30,790 + +0.1 30,790 + -0.7 30,791 - -1.5 30,792 + +0.6 30,793 - +1.6 30,812 + -0.7 30,812 + +0.4 30,813 - -0.4 30,884 + +0.1 30,894 - BACOVA_00670 0.11 +0.4 30,924 - BACOVA_00670 0.15 +0.7 30,924 - BACOVA_00670 0.15 -1.5 30,933 - BACOVA_00670 0.16 +1.7 31,007 + BACOVA_00670 0.26 +0.6 31,304 + BACOVA_00670 0.64 +1.6 31,373 + BACOVA_00670 0.73 +0.1 31,374 - BACOVA_00670 0.73 +0.4 31,374 - BACOVA_00670 0.73 +1.6 31,448 + BACOVA_00670 0.82 -0.4 31,466 + BACOVA_00670 0.84 +0.8 31,467 - BACOVA_00670 0.85 +0.1 31,554 + +0.1 31,572 + -0.6 31,621 - +0.1 31,626 + -1.6 31,627 - -0.2 31,630 + -1.5 31,633 + -1.0 31,634 - -0.2 31,638 + +0.3 31,639 - +0.9 31,639 - -0.7 31,639 - +0.1 31,661 + -1.2 31,683 + +0.3 31,724 - -1.2 31,867 + BACOVA_00671 0.15 +1.1 31,904 + BACOVA_00671 0.17 +1.5 31,925 - BACOVA_00671 0.18 +1.6 31,973 - BACOVA_00671 0.22 -0.4 32,045 + BACOVA_00671 0.26 +0.6 32,045 + BACOVA_00671 0.26 -0.0 32,181 - BACOVA_00671 0.35 +0.3 32,232 + BACOVA_00671 0.39 -0.8 32,232 + BACOVA_00671 0.39 +1.5 32,233 - BACOVA_00671 0.39 +0.6 32,322 + BACOVA_00671 0.45 +2.1 32,355 + BACOVA_00671 0.47 -1.2 32,355 + BACOVA_00671 0.47 -0.7 32,355 + BACOVA_00671 0.47 +1.3 32,355 + BACOVA_00671 0.47 +1.0 32,355 + BACOVA_00671 0.47 +0.0 32,357 + BACOVA_00671 0.47 +0.9 32,357 + BACOVA_00671 0.47 +2.0 32,361 + BACOVA_00671 0.47 +1.8 32,361 + BACOVA_00671 0.47 +1.1 32,361 + BACOVA_00671 0.47 -0.9 32,362 - BACOVA_00671 0.47 +1.0 32,364 + BACOVA_00671 0.47 +1.2 32,365 - BACOVA_00671 0.48 -0.5 32,376 + BACOVA_00671 0.48 +1.6 32,439 - BACOVA_00671 0.52 +0.9 32,468 + BACOVA_00671 0.54 +0.9 32,541 + BACOVA_00671 0.59 -1.0 32,609 + BACOVA_00671 0.64 +1.0 32,785 + BACOVA_00671 0.75 +0.5 32,786 - BACOVA_00671 0.75 +0.6 32,787 + BACOVA_00671 0.75 -0.4 32,787 + BACOVA_00671 0.75 +1.1 32,898 + BACOVA_00671 0.83 +1.4 32,940 - BACOVA_00671 0.85 +0.4 32,962 + BACOVA_00671 0.87 +0.8 32,982 + BACOVA_00671 0.88 +0.6 32,983 - BACOVA_00671 0.88 -0.8 32,983 - BACOVA_00671 0.88 -0.1 32,988 - BACOVA_00671 0.89 +1.3 33,033 + -0.9 33,034 - +0.1 33,034 - +0.9 33,113 - +1.1 33,113 - +0.3 33,113 - +1.2 33,131 - +1.4 33,145 + +0.8 33,145 + -0.3 33,145 + +0.4 33,157 + -0.3 33,256 + BACOVA_00672 0.12 -1.0 33,256 + BACOVA_00672 0.12 +0.7 33,257 - BACOVA_00672 0.13 -0.2 33,350 - BACOVA_00672 0.24 -0.7 33,364 - BACOVA_00672 0.26 +0.0 33,366 + BACOVA_00672 0.26 -0.0 33,367 - BACOVA_00672 0.26 +0.3 33,399 - BACOVA_00672 0.30 -0.8 33,420 + BACOVA_00672 0.33 +0.6 33,420 + BACOVA_00672 0.33 -0.2 33,604 - BACOVA_00672 0.56 -1.9 33,604 - BACOVA_00672 0.56 +0.3 33,616 + BACOVA_00672 0.57 -0.7 33,616 + BACOVA_00672 0.57 +0.7 33,617 - BACOVA_00672 0.57 -0.4 33,617 - BACOVA_00672 0.57 +1.0 33,624 + BACOVA_00672 0.58 -0.9 33,647 + BACOVA_00672 0.61 +1.3 33,667 - BACOVA_00672 0.64 +0.8 33,709 + BACOVA_00672 0.69 -1.5 33,710 - BACOVA_00672 0.69 -0.0 33,740 - BACOVA_00672 0.73 +0.6 33,740 - BACOVA_00672 0.73 -0.4 33,746 + BACOVA_00672 0.73 -0.9 33,747 - BACOVA_00672 0.74 -1.4 33,760 - BACOVA_00672 0.75 +1.4 33,823 + BACOVA_00672 0.83 -0.2 33,824 - BACOVA_00672 0.83 +0.6 33,824 - BACOVA_00672 0.83 -0.1 33,853 + BACOVA_00672 0.87 -0.6 33,873 + BACOVA_00672 0.89 -1.1 33,874 - BACOVA_00672 0.89 -0.4 33,933 + +0.1 33,933 + -0.2 33,934 - +0.4 33,941 + -0.0 33,954 + -0.6 33,963 + -0.4 33,986 + +1.4 33,987 - -0.2 34,015 + BACOVA_00673 0.10 -0.0 34,016 - BACOVA_00673 0.11 +0.5 34,020 + BACOVA_00673 0.13 -0.0 34,021 - BACOVA_00673 0.14 +0.1 34,033 + BACOVA_00673 0.21 +1.0 34,069 + BACOVA_00673 0.44 -1.2 34,070 - BACOVA_00673 0.45 -0.2 34,070 - BACOVA_00673 0.45 +2.5 34,107 + BACOVA_00673 0.68 +0.2 34,108 - BACOVA_00673 0.69 -0.9 34,109 + BACOVA_00673 0.69 +0.6 34,109 + BACOVA_00673 0.69 -0.4 34,110 - BACOVA_00673 0.70 -1.3 34,114 - BACOVA_00673 0.72 -0.6 34,114 - BACOVA_00673 0.72 -0.0 34,122 - BACOVA_00673 0.77 +0.2 34,122 - BACOVA_00673 0.77 -1.0 34,124 + BACOVA_00673 0.79 -0.1 34,125 - BACOVA_00673 0.79 -2.6 34,125 - BACOVA_00673 0.79 +0.7
Or see this region's nucleotide sequence