Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00668 and BACOVA_00669 overlap by 20 nucleotides BACOVA_00669 and BACOVA_00670 overlap by 4 nucleotides BACOVA_00670 and BACOVA_00671 are separated by 58 nucleotides
BACOVA_00668: BACOVA_00668 - hypothetical protein, at 29,949 to 30,278
_00668
BACOVA_00669: BACOVA_00669 - Sigma-70 region 2, at 30,259 to 30,810
_00669
BACOVA_00670: BACOVA_00670 - hypothetical protein, at 30,807 to 31,586
_00670
BACOVA_00671: BACOVA_00671 - NOL1/NOP2/sun family protein, at 31,645 to 33,159
_00671
Position (kb)
30
31
32 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 29.917 kb on + strand at 29.917 kb on + strand at 29.918 kb on - strand at 29.937 kb on + strand at 29.937 kb on + strand at 29.938 kb on - strand at 29.941 kb on + strand at 29.941 kb on + strand at 29.951 kb on - strand at 29.976 kb on - strand at 30.045 kb on - strand, within BACOVA_00668 at 30.045 kb on - strand, within BACOVA_00668 at 30.057 kb on - strand, within BACOVA_00668 at 30.168 kb on - strand, within BACOVA_00668 at 30.178 kb on - strand, within BACOVA_00668 at 30.296 kb on + strand at 30.358 kb on + strand, within BACOVA_00669 at 30.384 kb on + strand, within BACOVA_00669 at 30.385 kb on - strand, within BACOVA_00669 at 30.385 kb on - strand, within BACOVA_00669 at 30.399 kb on - strand, within BACOVA_00669 at 30.432 kb on + strand, within BACOVA_00669 at 30.505 kb on + strand, within BACOVA_00669 at 30.505 kb on + strand, within BACOVA_00669 at 30.506 kb on - strand, within BACOVA_00669 at 30.517 kb on - strand, within BACOVA_00669 at 30.550 kb on - strand, within BACOVA_00669 at 30.552 kb on - strand, within BACOVA_00669 at 30.570 kb on - strand, within BACOVA_00669 at 30.570 kb on - strand, within BACOVA_00669 at 30.576 kb on + strand, within BACOVA_00669 at 30.630 kb on + strand, within BACOVA_00669 at 30.630 kb on + strand, within BACOVA_00669 at 30.640 kb on - strand, within BACOVA_00669 at 30.649 kb on - strand, within BACOVA_00669 at 30.649 kb on - strand, within BACOVA_00669 at 30.726 kb on - strand, within BACOVA_00669 at 30.790 kb on + strand at 30.790 kb on + strand at 30.790 kb on + strand at 30.791 kb on - strand at 30.792 kb on + strand at 30.793 kb on - strand at 30.812 kb on + strand at 30.812 kb on + strand at 30.813 kb on - strand at 30.884 kb on + strand at 30.894 kb on - strand, within BACOVA_00670 at 30.924 kb on - strand, within BACOVA_00670 at 30.924 kb on - strand, within BACOVA_00670 at 30.933 kb on - strand, within BACOVA_00670 at 31.007 kb on + strand, within BACOVA_00670 at 31.304 kb on + strand, within BACOVA_00670 at 31.373 kb on + strand, within BACOVA_00670 at 31.374 kb on - strand, within BACOVA_00670 at 31.374 kb on - strand, within BACOVA_00670 at 31.448 kb on + strand, within BACOVA_00670 at 31.466 kb on + strand, within BACOVA_00670 at 31.467 kb on - strand, within BACOVA_00670 at 31.554 kb on + strand at 31.572 kb on + strand at 31.621 kb on - strand at 31.626 kb on + strand at 31.627 kb on - strand at 31.630 kb on + strand at 31.633 kb on + strand at 31.634 kb on - strand at 31.638 kb on + strand at 31.639 kb on - strand at 31.639 kb on - strand at 31.639 kb on - strand at 31.661 kb on + strand at 31.683 kb on + strand at 31.724 kb on - strand at 31.867 kb on + strand, within BACOVA_00671 at 31.904 kb on + strand, within BACOVA_00671 at 31.925 kb on - strand, within BACOVA_00671 at 31.973 kb on - strand, within BACOVA_00671 at 32.045 kb on + strand, within BACOVA_00671 at 32.045 kb on + strand, within BACOVA_00671 at 32.181 kb on - strand, within BACOVA_00671 at 32.232 kb on + strand, within BACOVA_00671 at 32.232 kb on + strand, within BACOVA_00671 at 32.233 kb on - strand, within BACOVA_00671 at 32.322 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.357 kb on + strand, within BACOVA_00671 at 32.357 kb on + strand, within BACOVA_00671 at 32.361 kb on + strand, within BACOVA_00671 at 32.361 kb on + strand, within BACOVA_00671 at 32.361 kb on + strand, within BACOVA_00671 at 32.362 kb on - strand, within BACOVA_00671 at 32.364 kb on + strand, within BACOVA_00671 at 32.365 kb on - strand, within BACOVA_00671 at 32.376 kb on + strand, within BACOVA_00671 at 32.439 kb on - strand, within BACOVA_00671 at 32.468 kb on + strand, within BACOVA_00671 at 32.541 kb on + strand, within BACOVA_00671
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 29,917 + -0.4 29,917 + +0.1 29,918 - -0.0 29,937 + +0.6 29,937 + +0.1 29,938 - -1.1 29,941 + +0.5 29,941 + -0.7 29,951 - -0.4 29,976 - +0.8 30,045 - BACOVA_00668 0.29 -0.6 30,045 - BACOVA_00668 0.29 +0.5 30,057 - BACOVA_00668 0.33 +0.4 30,168 - BACOVA_00668 0.66 -0.0 30,178 - BACOVA_00668 0.69 -2.2 30,296 + +0.2 30,358 + BACOVA_00669 0.18 +0.3 30,384 + BACOVA_00669 0.23 +0.2 30,385 - BACOVA_00669 0.23 +0.1 30,385 - BACOVA_00669 0.23 -0.4 30,399 - BACOVA_00669 0.25 +0.4 30,432 + BACOVA_00669 0.31 -0.4 30,505 + BACOVA_00669 0.45 +0.0 30,505 + BACOVA_00669 0.45 +1.0 30,506 - BACOVA_00669 0.45 +0.7 30,517 - BACOVA_00669 0.47 -0.8 30,550 - BACOVA_00669 0.53 -0.2 30,552 - BACOVA_00669 0.53 +0.6 30,570 - BACOVA_00669 0.56 +0.2 30,570 - BACOVA_00669 0.56 -0.0 30,576 + BACOVA_00669 0.57 -1.3 30,630 + BACOVA_00669 0.67 +0.5 30,630 + BACOVA_00669 0.67 -0.2 30,640 - BACOVA_00669 0.69 +0.5 30,649 - BACOVA_00669 0.71 +0.6 30,649 - BACOVA_00669 0.71 -0.0 30,726 - BACOVA_00669 0.85 -0.2 30,790 + -0.0 30,790 + +0.1 30,790 + -0.7 30,791 - -1.5 30,792 + +0.6 30,793 - +1.6 30,812 + -0.7 30,812 + +0.4 30,813 - -0.4 30,884 + +0.1 30,894 - BACOVA_00670 0.11 +0.4 30,924 - BACOVA_00670 0.15 +0.7 30,924 - BACOVA_00670 0.15 -1.5 30,933 - BACOVA_00670 0.16 +1.7 31,007 + BACOVA_00670 0.26 +0.6 31,304 + BACOVA_00670 0.64 +1.6 31,373 + BACOVA_00670 0.73 +0.1 31,374 - BACOVA_00670 0.73 +0.4 31,374 - BACOVA_00670 0.73 +1.6 31,448 + BACOVA_00670 0.82 -0.4 31,466 + BACOVA_00670 0.84 +0.8 31,467 - BACOVA_00670 0.85 +0.1 31,554 + +0.1 31,572 + -0.6 31,621 - +0.1 31,626 + -1.6 31,627 - -0.2 31,630 + -1.5 31,633 + -1.0 31,634 - -0.2 31,638 + +0.3 31,639 - +0.9 31,639 - -0.7 31,639 - +0.1 31,661 + -1.2 31,683 + +0.3 31,724 - -1.2 31,867 + BACOVA_00671 0.15 +1.1 31,904 + BACOVA_00671 0.17 +1.5 31,925 - BACOVA_00671 0.18 +1.6 31,973 - BACOVA_00671 0.22 -0.4 32,045 + BACOVA_00671 0.26 +0.6 32,045 + BACOVA_00671 0.26 -0.0 32,181 - BACOVA_00671 0.35 +0.3 32,232 + BACOVA_00671 0.39 -0.8 32,232 + BACOVA_00671 0.39 +1.5 32,233 - BACOVA_00671 0.39 +0.6 32,322 + BACOVA_00671 0.45 +2.1 32,355 + BACOVA_00671 0.47 -1.2 32,355 + BACOVA_00671 0.47 -0.7 32,355 + BACOVA_00671 0.47 +1.3 32,355 + BACOVA_00671 0.47 +1.0 32,355 + BACOVA_00671 0.47 +0.0 32,357 + BACOVA_00671 0.47 +0.9 32,357 + BACOVA_00671 0.47 +2.0 32,361 + BACOVA_00671 0.47 +1.8 32,361 + BACOVA_00671 0.47 +1.1 32,361 + BACOVA_00671 0.47 -0.9 32,362 - BACOVA_00671 0.47 +1.0 32,364 + BACOVA_00671 0.47 +1.2 32,365 - BACOVA_00671 0.48 -0.5 32,376 + BACOVA_00671 0.48 +1.6 32,439 - BACOVA_00671 0.52 +0.9 32,468 + BACOVA_00671 0.54 +0.9 32,541 + BACOVA_00671 0.59 -1.0
Or see this region's nucleotide sequence