Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00542

Experiment: L-Rhamnose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00540 and BACOVA_00541 are separated by 126 nucleotidesBACOVA_00541 and BACOVA_00542 are separated by 143 nucleotidesBACOVA_00542 and BACOVA_00543 are separated by 17 nucleotidesBACOVA_00543 and BACOVA_00544 are separated by 191 nucleotidesBACOVA_00544 and BACOVA_00545 overlap by 4 nucleotides BACOVA_00540: BACOVA_00540 - hypothetical protein, at 37,694 to 40,675 _00540 BACOVA_00541: BACOVA_00541 - hypothetical protein, at 40,802 to 40,903 _00541 BACOVA_00542: BACOVA_00542 - N-acetylmuramoyl-L-alanine amidase, at 41,047 to 41,547 _00542 BACOVA_00543: BACOVA_00543 - putative DNA-binding protein, at 41,565 to 42,080 _00543 BACOVA_00544: BACOVA_00544 - hypothetical protein, at 42,272 to 42,379 _00544 BACOVA_00545: BACOVA_00545 - hypothetical protein, at 42,376 to 42,621 _00545 Position (kb) 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 40.242 kb on + strand, within BACOVA_00540at 40.251 kb on + strand, within BACOVA_00540at 40.251 kb on + strand, within BACOVA_00540at 40.276 kb on + strand, within BACOVA_00540at 40.300 kb on - strand, within BACOVA_00540at 40.320 kb on + strand, within BACOVA_00540at 40.320 kb on + strand, within BACOVA_00540at 40.321 kb on - strand, within BACOVA_00540at 40.321 kb on - strand, within BACOVA_00540at 40.321 kb on - strand, within BACOVA_00540at 40.321 kb on - strand, within BACOVA_00540at 40.341 kb on + strand, within BACOVA_00540at 40.373 kb on + strand, within BACOVA_00540at 40.452 kb on + strandat 40.452 kb on + strandat 40.497 kb on + strandat 40.497 kb on + strandat 40.498 kb on - strandat 40.498 kb on - strandat 40.498 kb on - strandat 40.500 kb on - strandat 40.501 kb on + strandat 40.502 kb on - strandat 40.554 kb on + strandat 40.576 kb on + strandat 40.576 kb on + strandat 40.617 kb on + strandat 40.621 kb on + strandat 40.621 kb on + strandat 40.621 kb on + strandat 40.622 kb on - strandat 40.624 kb on + strandat 40.624 kb on + strandat 40.634 kb on + strandat 40.661 kb on - strandat 40.661 kb on - strandat 40.661 kb on - strandat 40.664 kb on + strandat 40.678 kb on - strandat 40.777 kb on + strandat 40.778 kb on - strandat 40.960 kb on + strandat 40.964 kb on + strandat 40.970 kb on + strandat 41.158 kb on + strand, within BACOVA_00542at 41.298 kb on + strand, within BACOVA_00542at 41.387 kb on + strand, within BACOVA_00542at 41.390 kb on + strand, within BACOVA_00542at 41.514 kb on + strandat 41.514 kb on + strandat 41.566 kb on + strandat 41.789 kb on + strand, within BACOVA_00543at 41.982 kb on + strand, within BACOVA_00543at 42.208 kb on + strandat 42.275 kb on + strandat 42.309 kb on + strand, within BACOVA_00544at 42.427 kb on + strand, within BACOVA_00545at 42.452 kb on + strand, within BACOVA_00545at 42.468 kb on - strand, within BACOVA_00545at 42.478 kb on + strand, within BACOVA_00545at 42.513 kb on + strand, within BACOVA_00545at 42.524 kb on + strand, within BACOVA_00545at 42.525 kb on - strand, within BACOVA_00545

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C)
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40,242 + BACOVA_00540 0.85 -0.3
40,251 + BACOVA_00540 0.86 +0.2
40,251 + BACOVA_00540 0.86 -0.0
40,276 + BACOVA_00540 0.87 +0.3
40,300 - BACOVA_00540 0.87 +0.1
40,320 + BACOVA_00540 0.88 -0.7
40,320 + BACOVA_00540 0.88 -0.4
40,321 - BACOVA_00540 0.88 +0.2
40,321 - BACOVA_00540 0.88 +0.3
40,321 - BACOVA_00540 0.88 +0.3
40,321 - BACOVA_00540 0.88 +0.3
40,341 + BACOVA_00540 0.89 -0.1
40,373 + BACOVA_00540 0.90 +0.0
40,452 + +0.5
40,452 + +0.4
40,497 + +0.5
40,497 + -0.7
40,498 - +0.2
40,498 - +0.5
40,498 - +0.2
40,500 - -0.7
40,501 + -0.0
40,502 - +0.8
40,554 + +0.6
40,576 + -1.2
40,576 + -0.4
40,617 + +0.1
40,621 + -1.4
40,621 + +0.5
40,621 + -2.0
40,622 - +1.0
40,624 + +2.0
40,624 + -0.3
40,634 + +0.5
40,661 - +0.3
40,661 - -1.0
40,661 - -0.4
40,664 + -0.8
40,678 - -1.3
40,777 + +0.4
40,778 - -0.3
40,960 + +1.0
40,964 + +0.6
40,970 + +0.1
41,158 + BACOVA_00542 0.22 -0.9
41,298 + BACOVA_00542 0.50 -0.0
41,387 + BACOVA_00542 0.68 -0.7
41,390 + BACOVA_00542 0.68 -0.8
41,514 + -1.7
41,514 + +0.5
41,566 + -2.0
41,789 + BACOVA_00543 0.43 -0.7
41,982 + BACOVA_00543 0.81 -0.4
42,208 + +0.0
42,275 + -2.8
42,309 + BACOVA_00544 0.34 +1.3
42,427 + BACOVA_00545 0.21 -0.1
42,452 + BACOVA_00545 0.31 +0.8
42,468 - BACOVA_00545 0.37 -0.5
42,478 + BACOVA_00545 0.41 +0.6
42,513 + BACOVA_00545 0.56 -0.2
42,524 + BACOVA_00545 0.60 +1.5
42,525 - BACOVA_00545 0.61 +2.2

Or see this region's nucleotide sequence