Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00435 and BACOVA_00436 are separated by 130 nucleotides BACOVA_00436 and BACOVA_00437 are separated by 215 nucleotides BACOVA_00437 and BACOVA_00438 are separated by 27 nucleotides BACOVA_00438 and BACOVA_00439 are separated by 41 nucleotides BACOVA_00439 and BACOVA_00440 are separated by 175 nucleotides BACOVA_00440 and BACOVA_00441 are separated by 87 nucleotides
BACOVA_00435: BACOVA_00435 - sigma factor regulatory protein, FecR/PupR family, at 16,290 to 17,489
_00435
BACOVA_00436: BACOVA_00436 - sigma-70, region 4, at 17,620 to 18,207
_00436
BACOVA_00437: BACOVA_00437 - hypothetical protein, at 18,423 to 18,557
_00437
BACOVA_00438: BACOVA_00438 - hypothetical protein, at 18,585 to 18,701
_00438
BACOVA_00439: BACOVA_00439 - hypothetical protein, at 18,743 to 18,856
_00439
BACOVA_00440: BACOVA_00440 - hypothetical protein, at 19,032 to 19,184
_00440
BACOVA_00441: BACOVA_00441 - hypothetical protein, at 19,272 to 19,436
_00441
Position (kb) 18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.464 kb on - strand at 17.471 kb on + strand at 17.471 kb on + strand at 17.471 kb on + strand at 17.472 kb on - strand at 17.499 kb on + strand at 17.506 kb on + strand at 17.532 kb on + strand at 17.534 kb on + strand at 17.596 kb on - strand at 17.600 kb on + strand at 17.600 kb on + strand at 17.600 kb on + strand at 17.603 kb on - strand at 17.614 kb on - strand at 17.616 kb on - strand at 17.621 kb on + strand at 17.637 kb on + strand at 17.641 kb on - strand at 17.656 kb on - strand at 17.702 kb on - strand, within BACOVA_00436 at 17.721 kb on + strand, within BACOVA_00436 at 17.734 kb on + strand, within BACOVA_00436 at 17.780 kb on + strand, within BACOVA_00436 at 17.780 kb on + strand, within BACOVA_00436 at 17.781 kb on - strand, within BACOVA_00436 at 17.819 kb on - strand, within BACOVA_00436 at 17.821 kb on - strand, within BACOVA_00436 at 17.821 kb on - strand, within BACOVA_00436 at 17.881 kb on - strand, within BACOVA_00436 at 17.881 kb on - strand, within BACOVA_00436 at 17.881 kb on - strand, within BACOVA_00436 at 17.966 kb on - strand, within BACOVA_00436 at 18.027 kb on - strand, within BACOVA_00436 at 18.062 kb on - strand, within BACOVA_00436 at 18.062 kb on - strand, within BACOVA_00436 at 18.095 kb on + strand, within BACOVA_00436 at 18.095 kb on + strand, within BACOVA_00436 at 18.096 kb on - strand, within BACOVA_00436 at 18.103 kb on + strand, within BACOVA_00436 at 18.118 kb on + strand, within BACOVA_00436 at 18.119 kb on - strand, within BACOVA_00436 at 18.172 kb on + strand at 18.173 kb on - strand at 18.173 kb on - strand at 18.179 kb on - strand at 18.218 kb on + strand at 18.219 kb on - strand at 18.240 kb on + strand at 18.241 kb on - strand at 18.300 kb on - strand at 18.310 kb on + strand at 18.326 kb on + strand at 18.326 kb on + strand at 18.327 kb on - strand at 18.327 kb on - strand at 18.329 kb on - strand at 18.351 kb on + strand at 18.351 kb on + strand at 18.390 kb on - strand at 18.390 kb on - strand at 18.427 kb on + strand at 18.449 kb on + strand, within BACOVA_00437 at 18.449 kb on + strand, within BACOVA_00437 at 18.449 kb on + strand, within BACOVA_00437 at 18.450 kb on - strand, within BACOVA_00437 at 18.450 kb on - strand, within BACOVA_00437 at 18.450 kb on - strand, within BACOVA_00437 at 18.457 kb on - strand, within BACOVA_00437 at 18.473 kb on + strand, within BACOVA_00437 at 18.474 kb on - strand, within BACOVA_00437 at 18.475 kb on - strand, within BACOVA_00437 at 18.489 kb on - strand, within BACOVA_00437 at 18.604 kb on + strand, within BACOVA_00438 at 18.680 kb on - strand, within BACOVA_00438 at 18.699 kb on + strand at 18.707 kb on + strand at 18.707 kb on + strand at 18.767 kb on + strand, within BACOVA_00439 at 18.768 kb on - strand, within BACOVA_00439 at 18.869 kb on - strand at 18.933 kb on + strand at 18.933 kb on + strand at 18.933 kb on + strand at 18.934 kb on - strand at 18.960 kb on + strand at 18.980 kb on + strand at 18.980 kb on + strand at 18.981 kb on - strand at 19.086 kb on - strand, within BACOVA_00440 at 19.103 kb on + strand, within BACOVA_00440 at 19.108 kb on + strand, within BACOVA_00440 at 19.111 kb on + strand, within BACOVA_00440 at 19.112 kb on - strand, within BACOVA_00440 at 19.116 kb on - strand, within BACOVA_00440 at 19.116 kb on - strand, within BACOVA_00440 at 19.183 kb on - strand at 19.253 kb on + strand at 19.271 kb on + strand at 19.271 kb on + strand at 19.313 kb on - strand, within BACOVA_00441 at 19.435 kb on - strand at 19.435 kb on - strand at 19.482 kb on - strand at 19.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 17,464 - -0.1 17,471 + +0.6 17,471 + +0.0 17,471 + +0.3 17,472 - +1.7 17,499 + +0.9 17,506 + -0.7 17,532 + -1.5 17,534 + +0.3 17,596 - +0.1 17,600 + -0.2 17,600 + -0.6 17,600 + +0.3 17,603 - +1.2 17,614 - -0.2 17,616 - -0.5 17,621 + -1.1 17,637 + -1.2 17,641 - +0.7 17,656 - -0.9 17,702 - BACOVA_00436 0.14 +2.1 17,721 + BACOVA_00436 0.17 -0.8 17,734 + BACOVA_00436 0.19 +0.8 17,780 + BACOVA_00436 0.27 +0.1 17,780 + BACOVA_00436 0.27 -0.3 17,781 - BACOVA_00436 0.27 +0.9 17,819 - BACOVA_00436 0.34 -0.3 17,821 - BACOVA_00436 0.34 -1.9 17,821 - BACOVA_00436 0.34 -0.7 17,881 - BACOVA_00436 0.44 -0.1 17,881 - BACOVA_00436 0.44 +1.1 17,881 - BACOVA_00436 0.44 -0.7 17,966 - BACOVA_00436 0.59 -0.0 18,027 - BACOVA_00436 0.69 +0.4 18,062 - BACOVA_00436 0.75 +0.6 18,062 - BACOVA_00436 0.75 +0.0 18,095 + BACOVA_00436 0.81 +0.4 18,095 + BACOVA_00436 0.81 +0.6 18,096 - BACOVA_00436 0.81 -0.3 18,103 + BACOVA_00436 0.82 -1.4 18,118 + BACOVA_00436 0.85 -1.1 18,119 - BACOVA_00436 0.85 -0.8 18,172 + +0.7 18,173 - +0.0 18,173 - -0.2 18,179 - -2.6 18,218 + -1.0 18,219 - +0.9 18,240 + +0.0 18,241 - -1.2 18,300 - +0.2 18,310 + -0.8 18,326 + +0.8 18,326 + -1.8 18,327 - -0.9 18,327 - -2.9 18,329 - -2.7 18,351 + +1.0 18,351 + -0.6 18,390 - +0.7 18,390 - +0.1 18,427 + -0.7 18,449 + BACOVA_00437 0.19 +0.8 18,449 + BACOVA_00437 0.19 +0.1 18,449 + BACOVA_00437 0.19 -1.7 18,450 - BACOVA_00437 0.20 +0.3 18,450 - BACOVA_00437 0.20 -0.4 18,450 - BACOVA_00437 0.20 +0.2 18,457 - BACOVA_00437 0.25 +0.7 18,473 + BACOVA_00437 0.37 +0.2 18,474 - BACOVA_00437 0.38 +1.0 18,475 - BACOVA_00437 0.39 +0.9 18,489 - BACOVA_00437 0.49 +0.4 18,604 + BACOVA_00438 0.16 +0.6 18,680 - BACOVA_00438 0.81 -1.1 18,699 + -0.3 18,707 + +0.4 18,707 + +0.1 18,767 + BACOVA_00439 0.21 +0.6 18,768 - BACOVA_00439 0.22 -1.5 18,869 - -1.1 18,933 + -0.8 18,933 + +0.5 18,933 + +1.1 18,934 - +0.3 18,960 + +0.2 18,980 + -0.1 18,980 + -1.7 18,981 - +0.4 19,086 - BACOVA_00440 0.35 +0.2 19,103 + BACOVA_00440 0.46 +0.3 19,108 + BACOVA_00440 0.50 +0.2 19,111 + BACOVA_00440 0.52 -0.2 19,112 - BACOVA_00440 0.52 -1.0 19,116 - BACOVA_00440 0.55 -0.3 19,116 - BACOVA_00440 0.55 -0.2 19,183 - -0.2 19,253 + -1.2 19,271 + +0.3 19,271 + +0.2 19,313 - BACOVA_00441 0.25 +1.4 19,435 - +0.6 19,435 - -1.3 19,482 - -1.3 19,518 - -0.4
Or see this region's nucleotide sequence