Strain Fitness in Escherichia fergusonii Becca around EFB2_04573

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,803,613	+				+0.5
4,803,667	+				+0.8
4,803,667	+				-1.8
4,803,667	+				-0.3
4,803,668	-				+1.4
4,803,668	-				+0.2
4,803,692	+		EFB2_04571	0.12	-0.4
4,803,693	-		EFB2_04571	0.13	+0.7
4,803,693	-		EFB2_04571	0.13	-0.7
4,803,711	+		EFB2_04571	0.17	+2.2
4,803,712	-		EFB2_04571	0.17	-0.4
4,803,736	+		EFB2_04571	0.23	+0.9
4,803,736	+		EFB2_04571	0.23	+0.9
4,803,736	+		EFB2_04571	0.23	+0.8
4,803,778	+		EFB2_04571	0.33	+1.7
4,803,779	-		EFB2_04571	0.34	-2.5
4,803,779	-		EFB2_04571	0.34	-0.2
4,803,780	+		EFB2_04571	0.34	+1.5
4,803,780	+		EFB2_04571	0.34	+0.3
4,803,780	+		EFB2_04571	0.34	-0.3
4,803,780	+		EFB2_04571	0.34	+0.9
4,803,780	+		EFB2_04571	0.34	+0.9
4,803,781	-		EFB2_04571	0.34	-1.0
4,803,781	-		EFB2_04571	0.34	+0.7
4,803,781	-		EFB2_04571	0.34	-2.1
4,803,781	-		EFB2_04571	0.34	+0.1
4,803,781	-		EFB2_04571	0.34	+1.2
4,803,781	-		EFB2_04571	0.34	+0.7
4,803,789	+		EFB2_04571	0.36	-0.0
4,803,789	+		EFB2_04571	0.36	+0.1
4,803,789	+		EFB2_04571	0.36	-2.1
4,803,789	+		EFB2_04571	0.36	-1.9
4,803,789	+		EFB2_04571	0.36	+0.2
4,803,789	+		EFB2_04571	0.36	+0.6
4,803,790	-		EFB2_04571	0.36	+0.6
4,803,790	-		EFB2_04571	0.36	-0.6
4,803,790	-		EFB2_04571	0.36	+0.6
4,803,790	-		EFB2_04571	0.36	-1.4
4,803,822	+		EFB2_04571	0.44	+0.5
4,803,822	+		EFB2_04571	0.44	+0.4
4,803,823	-		EFB2_04571	0.44	-2.1
4,803,823	-		EFB2_04571	0.44	-2.9
4,803,823	-		EFB2_04571	0.44	+0.8
4,803,823	-		EFB2_04571	0.44	-1.8
4,803,852	+		EFB2_04571	0.51	-0.8
4,803,853	-		EFB2_04571	0.52	+0.3
4,803,861	+		EFB2_04571	0.54	-0.4
4,803,862	-		EFB2_04571	0.54	+1.0
4,803,862	-		EFB2_04571	0.54	+0.4
4,803,862	-		EFB2_04571	0.54	+0.0
4,803,862	-		EFB2_04571	0.54	-0.2
4,803,862	-		EFB2_04571	0.54	-0.3
4,803,878	+		EFB2_04571	0.58	+1.2
4,803,878	+		EFB2_04571	0.58	-0.2
4,803,879	-		EFB2_04571	0.58	-3.3
4,803,879	-		EFB2_04571	0.58	+0.0
4,803,879	-		EFB2_04571	0.58	-1.8
4,803,888	+		EFB2_04571	0.60	-0.1
4,803,888	+		EFB2_04571	0.60	-2.5
4,803,888	+		EFB2_04571	0.60	-1.2
4,803,888	+		EFB2_04571	0.60	+0.3
4,803,888	+		EFB2_04571	0.60	-0.4
4,803,889	-		EFB2_04571	0.60	-1.2
4,803,889	-		EFB2_04571	0.60	+2.7
4,803,889	-		EFB2_04571	0.60	-0.9
4,803,889	-		EFB2_04571	0.60	+0.1
4,803,889	-		EFB2_04571	0.60	-1.2
4,803,889	-		EFB2_04571	0.60	-1.5
4,803,889	-		EFB2_04571	0.60	+0.0
4,803,892	+		EFB2_04571	0.61	-3.8
4,803,995	+		EFB2_04571	0.86	-0.1
4,803,995	+		EFB2_04571	0.86	-0.4
4,803,996	-		EFB2_04571	0.86	+0.1
4,803,996	-		EFB2_04571	0.86	-1.6
4,804,016	+				+0.4
4,804,016	+				-1.7
4,804,017	-				-2.1
4,804,017	-				-0.8
4,804,017	-				-3.1
4,804,017	-				+1.7
4,804,018	+				-0.5
4,804,018	+				-1.3
4,804,018	+				-0.6
4,804,018	+				+0.2
4,804,018	+				+0.9
4,804,018	+				+0.3
4,804,018	+				+4.4
4,804,018	+				-1.1
4,804,018	+				+0.2
4,804,018	+				+0.5
4,804,018	+				-0.1
4,804,018	+				+0.8
4,804,018	+				+0.8
4,804,018	+				+0.7
4,804,019	-				+0.1
4,804,019	-				+0.5
4,804,019	-				-1.9
4,804,019	-				+1.1
4,804,019	-				+0.7
4,804,019	-				-0.2
4,804,019	-				+0.5
4,804,019	-				-1.7
4,804,019	-				-2.3
4,804,019	-				-0.2
4,804,019	-				+0.8
4,804,019	-				+1.0
4,804,019	-				-0.9
4,804,019	-				+0.5
4,804,019	-				+0.4
4,804,019	-				+1.0
4,804,019	-				+0.4
4,804,019	-				-1.2
4,804,019	-				+0.8
4,804,051	+				-1.4
4,804,051	+				-2.0
4,804,051	+				+0.5
4,804,051	+				+0.3
4,804,051	+				-0.6
4,804,051	+				-0.2
4,804,051	+				-0.3
4,804,051	+				-1.7
4,804,051	+				+0.3
4,804,051	+				+0.9
4,804,051	+				+0.8
4,804,051	+				+1.6
4,804,051	+				-0.2
4,804,051	+				-0.3
4,804,051	+				-0.3
4,804,051	+				+1.5
4,804,051	+				+0.7
4,804,051	+				-0.6
4,804,051	+				-1.6
4,804,051	+				-0.2
4,804,051	+				-1.3
4,804,052	-				-0.9
4,804,052	-				+0.5
4,804,052	-				-0.4
4,804,052	-				-0.5
4,804,052	-				+1.1
4,804,052	-				+0.7
4,804,052	-				+0.4
4,804,052	-				+0.0
4,804,052	-				-1.1
4,804,052	-				-2.5
4,804,052	-				-3.4
4,804,052	-				-2.1
4,804,052	-				+1.2
4,804,052	-				-0.3
4,804,057	+				-1.1
4,804,057	+				+0.9
4,804,057	+				+1.9
4,804,057	+				-2.9
4,804,057	+				-3.1
4,804,058	-				-3.2
4,804,058	-				-0.2
4,804,058	-				+0.1
4,804,058	-				-2.4
4,804,085	+		EFB2_04572	0.23	+0.8
4,804,085	+		EFB2_04572	0.23	-2.3
4,804,085	+		EFB2_04572	0.23	+1.2
4,804,085	+		EFB2_04572	0.23	+0.4
4,804,085	+		EFB2_04572	0.23	-0.9
4,804,085	+		EFB2_04572	0.23	+0.1
4,804,085	+		EFB2_04572	0.23	-0.0
4,804,085	+		EFB2_04572	0.23	+0.1
4,804,085	+		EFB2_04572	0.23	+0.7
4,804,085	+		EFB2_04572	0.23	+0.8
4,804,085	+		EFB2_04572	0.23	+0.8
4,804,085	+		EFB2_04572	0.23	-0.6
4,804,085	+		EFB2_04572	0.23	+0.7
4,804,085	+		EFB2_04572	0.23	+0.5
4,804,085	+		EFB2_04572	0.23	+0.5
4,804,085	+		EFB2_04572	0.23	+1.5
4,804,085	+		EFB2_04572	0.23	-1.8
4,804,085	+		EFB2_04572	0.23	-0.1
4,804,085	+		EFB2_04572	0.23	+0.4
4,804,085	+		EFB2_04572	0.23	+0.4
4,804,086	-		EFB2_04572	0.24	-0.4
4,804,086	-		EFB2_04572	0.24	+0.5
4,804,086	-		EFB2_04572	0.24	+2.1
4,804,086	-		EFB2_04572	0.24	+0.2
4,804,086	-		EFB2_04572	0.24	+0.7
4,804,086	-		EFB2_04572	0.24	+0.1
4,804,086	-		EFB2_04572	0.24	+1.6
4,804,086	-		EFB2_04572	0.24	-0.5
4,804,086	-		EFB2_04572	0.24	-0.8
4,804,086	-		EFB2_04572	0.24	-0.5
4,804,086	-		EFB2_04572	0.24	-1.0
4,804,086	-		EFB2_04572	0.24	+0.2
4,804,086	-		EFB2_04572	0.24	-1.0
4,804,086	-		EFB2_04572	0.24	-1.5
4,804,086	-		EFB2_04572	0.24	-0.5
4,804,086	-		EFB2_04572	0.24	+1.5
4,804,086	-		EFB2_04572	0.24	-2.0
4,804,086	-		EFB2_04572	0.24	+0.4
4,804,086	-		EFB2_04572	0.24	-0.5
4,804,086	-		EFB2_04572	0.24	-1.3
4,804,086	-		EFB2_04572	0.24	+0.5
4,804,086	-		EFB2_04572	0.24	-0.1
4,804,087	+		EFB2_04572	0.25	+0.5
4,804,088	-		EFB2_04572	0.25	-1.5
4,804,111	+		EFB2_04572	0.40	+0.0
4,804,112	-		EFB2_04572	0.40	-3.3
4,804,113	+		EFB2_04572	0.41	+0.7
4,804,124	+		EFB2_04572	0.48	+0.3
4,804,124	+		EFB2_04572	0.48	+1.3
4,804,125	-		EFB2_04572	0.48	+0.3
4,804,125	-		EFB2_04572	0.48	+0.9
4,804,125	-		EFB2_04572	0.48	-0.7
4,804,144	+		EFB2_04572	0.60	-2.2
4,804,144	+		EFB2_04572	0.60	+1.0
4,804,144	+		EFB2_04572	0.60	+0.4
4,804,144	+		EFB2_04572	0.60	+1.2
4,804,145	-		EFB2_04572	0.61	+0.2
4,804,145	-		EFB2_04572	0.61	+0.6
4,804,145	-		EFB2_04572	0.61	+0.7
4,804,145	-		EFB2_04572	0.61	+1.9
4,804,145	-		EFB2_04572	0.61	-1.5
4,804,274	+				-0.2
4,804,274	+				-0.4
4,804,274	+				+0.6
4,804,274	+				+1.1
4,804,274	+				+1.3
4,804,275	-				-0.5
4,804,275	-				-0.0
4,804,282	+				-1.9
4,804,291	+				-0.3
4,804,305	+				-0.8
4,804,305	+				-2.4
4,804,305	+				-0.5
4,804,305	+				+0.8
4,804,305	+				-1.5
4,804,305	+				-2.1
4,804,306	-				-3.7
4,804,306	-				+0.5
4,804,306	-				+0.5
4,804,306	-				-0.4
4,804,324	+				+1.4
4,804,324	+				+0.4
4,804,347	+				+0.4
4,804,347	+				+0.6
4,804,347	+				-0.5
4,804,347	+				-0.4
4,804,347	+				-1.3
4,804,347	+				-3.2
4,804,348	-				-0.3
4,804,348	-				-2.2
4,804,348	-				+1.0
4,804,348	-				+0.4
4,804,348	-				+0.0
4,804,348	-				+0.4
4,804,348	-				+1.2
4,804,348	-				-0.2
4,804,348	-				-0.1
4,804,373	+				+1.7
4,804,385	-				-1.4
4,804,385	-				+0.6
4,804,385	-				+0.9
4,804,385	-				+1.0
4,804,485	+				-0.3
4,804,485	+				+1.0
4,804,486	-				+0.7
4,804,486	-				+0.5
4,804,486	-				-1.1
4,804,486	-				-0.3
4,804,593	-				-1.0
4,804,608	+				-0.1
4,804,623	+				+1.6
4,804,623	+				-1.1
4,804,623	+				+1.1
4,804,623	+				-0.8
4,804,623	+				-0.4
4,804,623	+				+0.9
4,804,623	+				-0.7
4,804,623	+				+0.4
4,804,623	+				+0.0
4,804,623	+				+0.8
4,804,623	+				-0.4
4,804,623	+				+0.4
4,804,624	-				+0.0
4,804,624	-				+0.7
4,804,624	-				-0.1
4,804,624	-				+1.0
4,804,624	-				-0.1
4,804,624	-				-1.3
4,804,628	+				+0.1
4,804,628	+				-0.9
4,804,628	+				-0.1
4,804,628	+				+0.4
4,804,628	+				-1.5
4,804,628	+				-0.9
4,804,628	+				-0.4
4,804,628	+				+0.0
4,804,628	+				+0.2
4,804,628	+				-0.2
4,804,629	-				+0.2
4,804,629	-				-0.2
4,804,629	-				+0.3
4,804,629	-				+0.1
4,804,629	-				-1.0
4,804,629	-				+0.9
4,804,629	-				-0.3
4,804,629	-				+0.5
4,804,629	-				-0.4
4,804,629	-				+1.1
4,804,629	-				+0.0
4,804,629	-				+0.5
4,804,629	-				-1.1
4,804,629	-				+1.1
4,804,629	-				+1.3
4,804,641	+				+3.2
4,804,642	-				-3.0
4,804,642	-				-0.1
4,804,735	+				+0.0
4,804,736	-				-0.1
4,804,736	-				+1.3
4,804,745	+				-0.0
4,804,745	+				-0.9
4,804,745	+				-0.1
4,804,745	+				-2.1
4,804,745	+				+0.4
4,804,745	+				+0.8
4,804,745	+				-0.9
4,804,745	+				-0.7
4,804,745	+				-3.0
4,804,745	+				+1.9
4,804,745	+				-1.0
4,804,745	+				+0.4
4,804,745	+				+2.0
4,804,745	+				+0.6
4,804,745	+				-0.9
4,804,745	+				+0.1
4,804,746	-				+0.6
4,804,746	-				-1.2
4,804,746	-				-2.4
4,804,746	-				-0.0
4,804,746	-				-0.8
4,804,746	-				+0.6
4,804,746	-				-0.2
4,804,746	-				+1.3
4,804,746	-				+0.0
4,804,746	-				-0.4
4,804,746	-				-1.1
4,804,746	-				+0.1
4,804,746	-				+1.6
4,804,746	-				-0.9
4,804,746	-				-0.3
4,804,746	-				-3.6
4,804,746	-				-0.8
4,804,746	-				+1.0
4,804,746	-				-0.4
4,804,746	-				+0.8
4,804,746	-				+1.1
4,804,746	-				-1.9
4,804,746	-				+0.9
4,804,746	-				+0.9
4,804,746	-				+1.1
4,804,746	-				+1.3
4,804,746	-				+1.2
4,804,746	-				+0.8
4,804,746	-				-0.5
4,804,776	-				-0.4
4,804,808	+		EFB2_04573	0.10	+0.1
4,804,808	+		EFB2_04573	0.10	+0.5
4,804,809	-		EFB2_04573	0.10	+0.2
4,804,809	-		EFB2_04573	0.10	+0.0
4,804,880	+		EFB2_04573	0.14	+1.1
4,804,880	+		EFB2_04573	0.14	-0.1
4,804,881	-		EFB2_04573	0.14	+0.0
4,804,934	+		EFB2_04573	0.16	+0.8
4,804,934	+		EFB2_04573	0.16	-0.8
4,804,965	-		EFB2_04573	0.18	-2.3
4,804,965	-		EFB2_04573	0.18	-1.4
4,804,965	-		EFB2_04573	0.18	+0.6
4,804,983	+		EFB2_04573	0.19	+1.0
4,804,984	-		EFB2_04573	0.19	+1.9
4,804,984	-		EFB2_04573	0.19	+0.1
4,804,984	-		EFB2_04573	0.19	+0.2
4,804,984	-		EFB2_04573	0.19	-0.4
4,804,984	-		EFB2_04573	0.19	+0.3
4,804,984	-		EFB2_04573	0.19	-0.2
4,805,017	+		EFB2_04573	0.20	+1.5
4,805,018	+		EFB2_04573	0.20	-0.6
4,805,018	+		EFB2_04573	0.20	+0.5
4,805,018	+		EFB2_04573	0.20	-0.5
4,805,018	+		EFB2_04573	0.20	+0.5
4,805,018	+		EFB2_04573	0.20	-0.7
4,805,018	+		EFB2_04573	0.20	+1.4
4,805,018	+		EFB2_04573	0.20	+0.4
4,805,018	+		EFB2_04573	0.20	+1.3
4,805,018	+		EFB2_04573	0.20	+0.2
4,805,018	+		EFB2_04573	0.20	+1.4
4,805,018	+		EFB2_04573	0.20	-0.7
4,805,018	+		EFB2_04573	0.20	+0.3
4,805,019	-		EFB2_04573	0.20	+0.6
4,805,019	-		EFB2_04573	0.20	-1.3
4,805,019	-		EFB2_04573	0.20	+1.2
4,805,019	-		EFB2_04573	0.20	-2.4
4,805,019	-		EFB2_04573	0.20	-0.2
4,805,019	-		EFB2_04573	0.20	-1.5
4,805,019	-		EFB2_04573	0.20	+0.1
4,805,019	-		EFB2_04573	0.20	+0.0
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