Strain Fitness in Escherichia fergusonii Becca around EFB2_04557

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,786,946	+		EFB2_04556	0.15	+1.6
4,786,946	+		EFB2_04556	0.15	-0.3
4,786,946	+		EFB2_04556	0.15	-0.2
4,786,946	+		EFB2_04556	0.15	-0.0
4,786,946	+		EFB2_04556	0.15	+0.1
4,786,946	+		EFB2_04556	0.15	-0.5
4,786,946	+		EFB2_04556	0.15	-2.3
4,786,946	+		EFB2_04556	0.15	+0.7
4,786,946	+		EFB2_04556	0.15	-1.0
4,786,946	+		EFB2_04556	0.15	-1.8
4,786,946	+		EFB2_04556	0.15	-0.5
4,786,946	+		EFB2_04556	0.15	+1.0
4,786,946	+		EFB2_04556	0.15	-0.9
4,786,946	+		EFB2_04556	0.15	+1.8
4,786,946	+		EFB2_04556	0.15	-0.5
4,786,946	+		EFB2_04556	0.15	+0.8
4,786,946	+		EFB2_04556	0.15	-0.6
4,786,946	+		EFB2_04556	0.15	+0.3
4,786,947	-		EFB2_04556	0.16	-0.2
4,786,947	-		EFB2_04556	0.16	-0.9
4,786,947	-		EFB2_04556	0.16	-0.6
4,786,947	-		EFB2_04556	0.16	-0.5
4,786,947	-		EFB2_04556	0.16	+0.1
4,786,947	-		EFB2_04556	0.16	+0.2
4,786,947	-		EFB2_04556	0.16	+1.2
4,786,947	-		EFB2_04556	0.16	+1.1
4,786,947	-		EFB2_04556	0.16	-0.1
4,786,947	-		EFB2_04556	0.16	+2.3
4,786,947	-		EFB2_04556	0.16	-3.1
4,786,947	-		EFB2_04556	0.16	-0.3
4,786,947	-		EFB2_04556	0.16	+0.4
4,786,947	-		EFB2_04556	0.16	-3.1
4,786,950	+		EFB2_04556	0.16	-0.2
4,786,950	+		EFB2_04556	0.16	+1.2
4,786,950	+		EFB2_04556	0.16	+0.5
4,786,950	+		EFB2_04556	0.16	-2.4
4,786,951	-		EFB2_04556	0.16	+0.1
4,786,951	-		EFB2_04556	0.16	-2.6
4,786,951	-		EFB2_04556	0.16	+1.2
4,786,951	-		EFB2_04556	0.16	+0.6
4,786,951	-		EFB2_04556	0.16	+0.4
4,786,951	-		EFB2_04556	0.16	+1.8
4,786,951	-		EFB2_04556	0.16	-0.1
4,786,951	-		EFB2_04556	0.16	-3.5
4,786,951	-		EFB2_04556	0.16	-0.9
4,786,976	+		EFB2_04556	0.18	-0.1
4,786,976	+		EFB2_04556	0.18	+1.8
4,786,976	+		EFB2_04556	0.18	+0.8
4,786,976	+		EFB2_04556	0.18	+0.5
4,786,976	+		EFB2_04556	0.18	-2.6
4,786,976	+		EFB2_04556	0.18	+0.3
4,786,976	+		EFB2_04556	0.18	-3.9
4,786,976	+		EFB2_04556	0.18	-1.4
4,786,976	+		EFB2_04556	0.18	-0.3
4,786,976	+		EFB2_04556	0.18	-0.0
4,786,977	-		EFB2_04556	0.19	-1.9
4,786,977	-		EFB2_04556	0.19	-0.7
4,786,977	-		EFB2_04556	0.19	+0.4
4,786,977	-		EFB2_04556	0.19	-0.0
4,786,977	-		EFB2_04556	0.19	+0.1
4,786,977	-		EFB2_04556	0.19	+0.1
4,786,977	-		EFB2_04556	0.19	-2.6
4,786,977	-		EFB2_04556	0.19	+0.4
4,786,977	-		EFB2_04556	0.19	+0.8
4,786,977	-		EFB2_04556	0.19	-1.2
4,786,977	-		EFB2_04556	0.19	+0.2
4,786,982	+		EFB2_04556	0.19	-0.9
4,786,982	+		EFB2_04556	0.19	-0.5
4,786,982	+		EFB2_04556	0.19	-1.0
4,786,983	-		EFB2_04556	0.19	-0.0
4,786,983	-		EFB2_04556	0.19	+1.9
4,786,983	-		EFB2_04556	0.19	-0.3
4,786,983	-		EFB2_04556	0.19	-1.6
4,786,983	-		EFB2_04556	0.19	+0.4
4,786,983	-		EFB2_04556	0.19	+0.1
4,786,983	-		EFB2_04556	0.19	+0.7
4,786,997	-		EFB2_04556	0.21	-1.3
4,787,020	-		EFB2_04556	0.23	-3.2
4,787,047	+		EFB2_04556	0.26	+1.3
4,787,048	-		EFB2_04556	0.26	-2.4
4,787,048	-		EFB2_04556	0.26	-0.5
4,787,075	+		EFB2_04556	0.28	+0.3
4,787,076	-		EFB2_04556	0.29	-0.9
4,787,076	-		EFB2_04556	0.29	+0.6
4,787,106	+		EFB2_04556	0.32	-0.5
4,787,106	+		EFB2_04556	0.32	+1.3
4,787,106	+		EFB2_04556	0.32	+0.5
4,787,106	+		EFB2_04556	0.32	-0.7
4,787,106	+		EFB2_04556	0.32	+0.5
4,787,106	+		EFB2_04556	0.32	+1.5
4,787,106	+		EFB2_04556	0.32	+0.7
4,787,106	+		EFB2_04556	0.32	+0.4
4,787,106	+		EFB2_04556	0.32	-1.5
4,787,106	+		EFB2_04556	0.32	+2.0
4,787,106	+		EFB2_04556	0.32	+0.8
4,787,106	+		EFB2_04556	0.32	-0.9
4,787,106	+		EFB2_04556	0.32	+1.2
4,787,106	+		EFB2_04556	0.32	+1.5
4,787,106	+		EFB2_04556	0.32	-1.3
4,787,106	+		EFB2_04556	0.32	-2.5
4,787,106	+		EFB2_04556	0.32	+2.8
4,787,106	+		EFB2_04556	0.32	-1.4
4,787,106	+		EFB2_04556	0.32	-2.0
4,787,106	+		EFB2_04556	0.32	+1.0
4,787,106	+		EFB2_04556	0.32	+1.5
4,787,106	+		EFB2_04556	0.32	-2.0
4,787,106	+		EFB2_04556	0.32	-3.4
4,787,107	-		EFB2_04556	0.32	-0.7
4,787,107	-		EFB2_04556	0.32	+1.0
4,787,107	-		EFB2_04556	0.32	+0.4
4,787,107	-		EFB2_04556	0.32	-0.7
4,787,107	-		EFB2_04556	0.32	+0.8
4,787,107	-		EFB2_04556	0.32	+0.0
4,787,107	-		EFB2_04556	0.32	+1.1
4,787,107	-		EFB2_04556	0.32	-1.3
4,787,107	-		EFB2_04556	0.32	-0.4
4,787,107	-		EFB2_04556	0.32	-0.2
4,787,107	-		EFB2_04556	0.32	+0.0
4,787,107	-		EFB2_04556	0.32	-1.2
4,787,107	-		EFB2_04556	0.32	-1.2
4,787,107	-		EFB2_04556	0.32	-0.7
4,787,107	-		EFB2_04556	0.32	-0.3
4,787,107	-		EFB2_04556	0.32	+0.3
4,787,107	-		EFB2_04556	0.32	+1.5
4,787,107	-		EFB2_04556	0.32	-0.9
4,787,107	-		EFB2_04556	0.32	+0.2
4,787,124	+		EFB2_04556	0.33	+1.5
4,787,124	+		EFB2_04556	0.33	+2.1
4,787,124	+		EFB2_04556	0.33	-1.2
4,787,125	-		EFB2_04556	0.33	-0.5
4,787,125	-		EFB2_04556	0.33	-0.1
4,787,125	-		EFB2_04556	0.33	-0.2
4,787,125	-		EFB2_04556	0.33	+0.0
4,787,145	+		EFB2_04556	0.35	+1.6
4,787,145	+		EFB2_04556	0.35	-1.0
4,787,146	-		EFB2_04556	0.36	+0.2
4,787,146	-		EFB2_04556	0.36	-0.6
4,787,146	-		EFB2_04556	0.36	-4.1
4,787,146	-		EFB2_04556	0.36	+0.6
4,787,146	-		EFB2_04556	0.36	-2.5
4,787,195	+		EFB2_04556	0.40	-1.0
4,787,195	+		EFB2_04556	0.40	-1.5
4,787,195	+		EFB2_04556	0.40	-3.1
4,787,196	-		EFB2_04556	0.41	+0.0
4,787,196	-		EFB2_04556	0.41	+0.3
4,787,196	-		EFB2_04556	0.41	-0.2
4,787,196	-		EFB2_04556	0.41	-1.3
4,787,208	-		EFB2_04556	0.42	+1.2
4,787,246	-		EFB2_04556	0.46	+0.8
4,787,265	+		EFB2_04556	0.47	-0.4
4,787,265	+		EFB2_04556	0.47	-1.4
4,787,265	+		EFB2_04556	0.47	-0.5
4,787,265	+		EFB2_04556	0.47	+0.3
4,787,265	+		EFB2_04556	0.47	-2.0
4,787,265	+		EFB2_04556	0.47	+0.3
4,787,265	+		EFB2_04556	0.47	-0.8
4,787,265	+		EFB2_04556	0.47	-0.4
4,787,266	-		EFB2_04556	0.48	-0.2
4,787,266	-		EFB2_04556	0.48	-1.4
4,787,266	-		EFB2_04556	0.48	-1.1
4,787,266	-		EFB2_04556	0.48	+0.0
4,787,266	-		EFB2_04556	0.48	-1.0
4,787,266	-		EFB2_04556	0.48	+0.5
4,787,339	+		EFB2_04556	0.55	+1.0
4,787,339	+		EFB2_04556	0.55	-0.1
4,787,339	+		EFB2_04556	0.55	+0.5
4,787,339	+		EFB2_04556	0.55	+0.3
4,787,339	+		EFB2_04556	0.55	+0.4
4,787,339	+		EFB2_04556	0.55	+0.8
4,787,340	-		EFB2_04556	0.55	-0.3
4,787,340	-		EFB2_04556	0.55	-1.2
4,787,340	-		EFB2_04556	0.55	-0.9
4,787,340	-		EFB2_04556	0.55	-1.4
4,787,340	-		EFB2_04556	0.55	+0.5
4,787,364	+		EFB2_04556	0.57	-2.4
4,787,364	+		EFB2_04556	0.57	+0.4
4,787,364	+		EFB2_04556	0.57	+0.5
4,787,364	+		EFB2_04556	0.57	+0.7
4,787,365	-		EFB2_04556	0.58	-1.0
4,787,440	-		EFB2_04556	0.65	-0.8
4,787,440	-		EFB2_04556	0.65	-3.5
4,787,516	+		EFB2_04556	0.73	-1.8
4,787,517	-		EFB2_04556	0.73	+0.2
4,787,588	-		EFB2_04556	0.80	-1.0
4,787,609	+		EFB2_04556	0.82	+0.4
4,787,609	+		EFB2_04556	0.82	+0.0
4,787,609	+		EFB2_04556	0.82	+0.5
4,787,609	+		EFB2_04556	0.82	-1.4
4,787,609	+		EFB2_04556	0.82	-1.0
4,787,609	+		EFB2_04556	0.82	-1.5
4,787,618	+		EFB2_04556	0.83	+0.7
4,787,618	+		EFB2_04556	0.83	+0.8
4,787,618	+		EFB2_04556	0.83	+0.7
4,787,618	+		EFB2_04556	0.83	-0.3
4,787,619	-		EFB2_04556	0.83	-1.8
4,787,619	-		EFB2_04556	0.83	+0.0
4,787,619	-		EFB2_04556	0.83	-1.0
4,787,628	+		EFB2_04556	0.84	-1.0
4,787,629	-		EFB2_04556	0.84	-1.1
4,787,664	+		EFB2_04556	0.88	+0.8
4,787,666	+		EFB2_04556	0.88	+0.1
4,787,666	+		EFB2_04556	0.88	-2.9
4,787,666	+		EFB2_04556	0.88	+0.0
4,787,666	+		EFB2_04556	0.88	-0.9
4,787,666	+		EFB2_04556	0.88	-0.2
4,787,666	+		EFB2_04556	0.88	+0.8
4,787,666	+		EFB2_04556	0.88	+0.2
4,787,666	+		EFB2_04556	0.88	+1.5
4,787,666	+		EFB2_04556	0.88	-0.3
4,787,666	+		EFB2_04556	0.88	+0.2
4,787,667	-		EFB2_04556	0.88	-0.8
4,787,667	-		EFB2_04556	0.88	+2.0
4,787,667	-		EFB2_04556	0.88	-0.1
4,787,667	-		EFB2_04556	0.88	+0.0
4,787,667	-		EFB2_04556	0.88	+0.4
4,787,667	-		EFB2_04556	0.88	-1.2
4,787,676	+		EFB2_04556	0.89	+0.3
4,787,676	+		EFB2_04556	0.89	+0.0
4,787,676	+		EFB2_04556	0.89	+0.6
4,787,676	+		EFB2_04556	0.89	-4.1
4,787,676	+		EFB2_04556	0.89	-2.5
4,787,676	+		EFB2_04556	0.89	+0.2
4,787,676	+		EFB2_04556	0.89	-1.3
4,787,677	-		EFB2_04556	0.89	-0.1
4,787,677	-		EFB2_04556	0.89	-0.3
4,787,677	-		EFB2_04556	0.89	-3.0
4,787,702	+				-2.0
4,787,703	-				-0.6
4,787,798	+				-2.8
4,787,809	+				+0.2
4,787,810	-				+2.0
4,787,823	+				+0.3
4,787,823	+				+0.4
4,787,823	+				-1.7
4,787,823	+				-2.9
4,787,823	+				+0.6
4,787,824	-				-2.7
4,787,824	-				-0.2
4,787,824	-				-0.4
4,787,826	+				+0.4
4,787,826	+				+0.7
4,787,826	+				-1.3
4,787,826	+				-0.5
4,787,826	+				-2.9
4,787,826	+				+1.0
4,787,826	+				+0.1
4,787,826	+				-0.4
4,787,826	+				+0.6
4,787,826	+				+1.3
4,787,826	+				-0.1
4,787,826	+				-1.8
4,787,826	+				+0.6
4,787,826	+				+0.7
4,787,826	+				-0.7
4,787,826	+				-1.8
4,787,826	+				-0.9
4,787,826	+				+0.1
4,787,826	+				+0.2
4,787,826	+				+0.3
4,787,826	+				-1.4
4,787,826	+				+0.0
4,787,827	-				+0.6
4,787,827	-				+0.5
4,787,827	-				+0.7
4,787,827	-				-0.1
4,787,827	-				+0.6
4,787,827	-				+1.0
4,787,827	-				+0.5
4,787,827	-				-1.4
4,787,827	-				-0.8
4,787,827	-				-3.3
4,787,827	-				+0.3
4,787,827	-				+0.2
4,787,827	-				+1.0
4,787,827	-				-0.1
4,787,827	-				+1.8
4,787,827	-				-1.1
4,787,827	-				+0.1
4,787,827	-				+0.1
4,787,827	-				+1.2
4,787,827	-				+0.3
4,787,827	-				-0.8
4,787,827	-				+0.6
4,787,827	-				-1.4
4,787,827	-				+0.1
4,787,827	-				-0.9
4,787,828	+				-2.1
4,787,828	+				-0.3
4,787,828	+				-3.5
4,787,828	+				-0.1
4,787,828	+				+1.5
4,787,828	+				-3.9
4,787,828	+				-0.2
4,787,828	+				+2.0
4,787,828	+				+0.6
4,787,828	+				+0.6
4,787,828	+				+1.6
4,787,828	+				-1.0
4,787,828	+				+1.2
4,787,828	+				+0.6
4,787,828	+				-0.3
4,787,828	+				-1.2
4,787,828	+				+0.7
4,787,828	+				-0.1
4,787,828	+				+0.7
4,787,828	+				-0.8
4,787,828	+				-3.2
4,787,828	+				+0.7
4,787,828	+				+0.0
4,787,828	+				+0.2
4,787,828	+				-0.3
4,787,828	+				+2.0
4,787,828	+				+1.0
4,787,828	+				-0.8
4,787,828	+				+0.7
4,787,828	+				+0.4
4,787,828	+				+0.0
4,787,828	+				-0.2
4,787,828	+				-0.6
4,787,828	+				-1.1
4,787,828	+				-1.3
4,787,828	+				+0.5
4,787,828	+				-0.1
4,787,828	+				-1.8
4,787,828	+				-0.1
4,787,828	+				-0.2
4,787,828	+				-0.1
4,787,828	+				-0.8
4,787,828	+				-1.0
4,787,828	+				+0.2
4,787,829	-				+1.3
4,787,829	-				+0.1
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