Strain Fitness in Escherichia fergusonii Becca around EFB2_04458

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,673,562	+		EFB2_04455	0.80	-0.4
4,673,563	-		EFB2_04455	0.80	-0.6
4,673,563	-		EFB2_04455	0.80	+0.5
4,673,563	-		EFB2_04455	0.80	-0.2
4,673,592	+				-3.5
4,673,592	+				+1.2
4,673,592	+				+1.1
4,673,593	-				-2.2
4,673,593	-				-1.3
4,673,593	-				+0.9
4,673,593	-				+1.2
4,673,596	+				-1.9
4,673,596	+				+0.6
4,673,596	+				-1.7
4,673,612	-				-2.9
4,673,612	-				-1.1
4,673,620	+				+0.1
4,673,624	-				-0.6
4,673,632	+				-1.7
4,673,632	+				+0.4
4,673,669	-				+1.4
4,673,690	+				+0.5
4,673,690	+				-2.7
4,673,690	+				+0.3
4,673,691	-				-2.9
4,673,692	+				-0.4
4,673,692	+				+1.1
4,673,692	+				-1.4
4,673,692	+				-0.4
4,673,693	-				-0.3
4,673,693	-				+0.4
4,673,693	-				+0.3
4,673,693	-				-1.8
4,673,699	+				-0.9
4,673,699	+				+0.7
4,673,700	-				+0.3
4,673,839	+				-0.1
4,673,839	+				-0.3
4,673,840	-				+1.0
4,673,868	+				-3.8
4,673,869	-				+0.4
4,673,909	+		EFB2_04456	0.22	-1.2
4,673,909	+		EFB2_04456	0.22	-2.2
4,673,909	+		EFB2_04456	0.22	+0.5
4,673,909	+		EFB2_04456	0.22	-0.0
4,673,909	+		EFB2_04456	0.22	-1.4
4,673,910	-		EFB2_04456	0.22	+1.4
4,673,910	-		EFB2_04456	0.22	+1.1
4,673,910	-		EFB2_04456	0.22	-0.2
4,673,910	-		EFB2_04456	0.22	+0.5
4,674,010	+		EFB2_04456	0.59	+1.4
4,674,010	+		EFB2_04456	0.59	+1.6
4,674,010	+		EFB2_04456	0.59	+0.7
4,674,010	+		EFB2_04456	0.59	+1.8
4,674,010	+		EFB2_04456	0.59	-2.4
4,674,011	-		EFB2_04456	0.59	-2.5
4,674,011	-		EFB2_04456	0.59	+0.5
4,674,011	-		EFB2_04456	0.59	-0.5
4,674,011	-		EFB2_04456	0.59	+1.2
4,674,026	+		EFB2_04456	0.65	-0.5
4,674,027	-		EFB2_04456	0.65	-0.6
4,674,086	-		EFB2_04456	0.87	+1.2
4,674,086	-		EFB2_04456	0.87	+0.5
4,674,086	-		EFB2_04456	0.87	-1.1
4,674,124	+				-1.3
4,674,125	-				+0.6
4,674,125	-				+1.1
4,674,134	+				-0.5
4,674,134	+				-3.7
4,674,134	+				-0.9
4,674,135	-				-0.4
4,674,135	-				-0.3
4,674,138	+				-3.4
4,674,138	+				-1.0
4,674,171	+		EFB2_04457	0.16	+0.1
4,674,171	+		EFB2_04457	0.16	+0.4
4,674,171	+		EFB2_04457	0.16	-1.3
4,674,171	+		EFB2_04457	0.16	-1.3
4,674,171	+		EFB2_04457	0.16	-3.4
4,674,171	+		EFB2_04457	0.16	+1.4
4,674,172	-		EFB2_04457	0.17	+0.0
4,674,172	-		EFB2_04457	0.17	-0.1
4,674,172	-		EFB2_04457	0.17	+0.7
4,674,172	-		EFB2_04457	0.17	+0.2
4,674,172	-		EFB2_04457	0.17	+0.6
4,674,184	-		EFB2_04457	0.22	+1.1
4,674,240	+		EFB2_04457	0.46	-0.4
4,674,244	+		EFB2_04457	0.48	-3.1
4,674,244	+		EFB2_04457	0.48	+1.2
4,674,244	+		EFB2_04457	0.48	+0.6
4,674,245	-		EFB2_04457	0.48	+1.5
4,674,245	-		EFB2_04457	0.48	+0.1
4,674,245	-		EFB2_04457	0.48	-1.4
4,674,262	+		EFB2_04457	0.56	-0.4
4,674,263	-		EFB2_04457	0.56	+0.1
4,674,286	+		EFB2_04457	0.66	-0.3
4,674,286	+		EFB2_04457	0.66	-0.9
4,674,287	-		EFB2_04457	0.67	+0.4
4,674,287	-		EFB2_04457	0.67	+0.7
4,674,287	-		EFB2_04457	0.67	+0.2
4,674,287	-		EFB2_04457	0.67	+0.5
4,674,287	-		EFB2_04457	0.67	+1.0
4,674,302	+		EFB2_04457	0.73	+0.9
4,674,302	+		EFB2_04457	0.73	+0.8
4,674,302	+		EFB2_04457	0.73	+0.2
4,674,303	-		EFB2_04457	0.74	+1.2
4,674,303	-		EFB2_04457	0.74	-0.5
4,674,324	+		EFB2_04457	0.83	+0.7
4,674,326	+		EFB2_04457	0.84	-2.2
4,674,336	-		EFB2_04457	0.88	+0.6
4,674,384	+				-1.3
4,674,384	+				-0.7
4,674,384	+				+0.0
4,674,385	-				-1.6
4,674,385	-				+2.1
4,674,385	-				+0.4
4,674,396	+				+0.8
4,674,396	+				+1.1
4,674,396	+				-3.0
4,674,396	+				+0.8
4,674,396	+				-1.6
4,674,397	-				-0.3
4,674,397	-				-0.7
4,674,397	-				-0.2
4,674,398	+				-0.0
4,674,398	+				+0.7
4,674,398	+				-1.5
4,674,398	+				-1.0
4,674,398	+				+0.5
4,674,398	+				+0.9
4,674,398	+				-0.7
4,674,398	+				+1.1
4,674,398	+				-2.2
4,674,398	+				-1.8
4,674,398	+				-0.9
4,674,399	-				-2.3
4,674,399	-				+1.0
4,674,399	-				-1.9
4,674,399	-				-3.3
4,674,399	-				-0.8
4,674,399	-				-0.7
4,674,399	-				+0.2
4,674,399	-				+1.3
4,674,399	-				+1.0
4,674,399	-				-0.3
4,674,399	-				-0.5
4,674,404	+				-1.2
4,674,404	+				-0.4
4,674,404	+				+0.6
4,674,404	+				-0.9
4,674,404	+				-1.5
4,674,405	-				+0.3
4,674,405	-				-3.2
4,674,421	+				+1.3
4,674,421	+				+0.3
4,674,422	-				-0.8
4,674,422	-				+1.5
4,674,460	+				-3.0
4,674,460	+				-2.8
4,674,460	+				-1.2
4,674,460	+				-1.5
4,674,460	+				-0.3
4,674,460	+				+0.5
4,674,460	+				-2.8
4,674,461	-				+0.9
4,674,461	-				+0.1
4,674,461	-				+0.7
4,674,461	-				-4.0
4,674,461	-				-0.4
4,674,461	-				+0.9
4,674,461	-				-0.9
4,674,461	-				-0.4
4,674,461	-				+0.9
4,674,461	-				+1.5
4,674,461	-				-1.9
4,674,461	-				-0.1
4,674,461	-				-2.3
4,674,461	-				+0.8
4,674,462	+				+1.5
4,674,463	-				-1.1
4,674,463	-				-2.0
4,674,463	-				-1.6
4,674,464	+				-1.9
4,674,464	+				+1.4
4,674,464	+				-0.5
4,674,464	+				-0.5
4,674,464	+				+0.1
4,674,464	+				+0.2
4,674,464	+				+0.5
4,674,464	+				+3.6
4,674,464	+				-0.4
4,674,464	+				+2.2
4,674,464	+				+1.3
4,674,465	-				-0.9
4,674,465	-				-0.9
4,674,465	-				+0.1
4,674,465	-				-1.1
4,674,478	+				-0.6
4,674,478	+				+1.9
4,674,478	+				-0.3
4,674,478	+				-1.9
4,674,478	+				-1.1
4,674,479	-				+0.5
4,674,479	-				+1.8
4,674,492	+				+0.3
4,674,510	+				+0.1
4,674,510	+				+1.1
4,674,510	+				+0.9
4,674,510	+				-0.3
4,674,510	+				-2.8
4,674,510	+				+0.7
4,674,511	-				+0.9
4,674,511	-				+0.6
4,674,511	-				+0.1
4,674,511	-				+0.4
4,674,511	-				-2.0
4,674,511	-				+1.0
4,674,511	-				+0.4
4,674,511	-				+1.5
4,674,511	-				-0.4
4,674,567	+				+0.2
4,674,567	+				-2.6
4,674,567	+				+0.3
4,674,567	+				+0.6
4,674,567	+				-0.4
4,674,567	+				+0.3
4,674,567	+				-0.2
4,674,567	+				+1.7
4,674,567	+				-3.4
4,674,567	+				+2.3
4,674,567	+				-3.9
4,674,567	+				+0.2
4,674,567	+				-3.6
4,674,567	+				+0.2
4,674,567	+				+2.2
4,674,567	+				+2.0
4,674,567	+				-0.6
4,674,567	+				+0.9
4,674,567	+				-0.7
4,674,567	+				-2.4
4,674,567	+				+0.4
4,674,567	+				+1.4
4,674,567	+				+1.2
4,674,567	+				+1.8
4,674,567	+				+0.7
4,674,567	+				-0.6
4,674,568	-				+1.2
4,674,568	-				-3.3
4,674,568	-				-1.6
4,674,568	-				+0.4
4,674,568	-				-0.8
4,674,568	-				-1.3
4,674,568	-				+1.5
4,674,568	-				+0.7
4,674,568	-				+0.6
4,674,568	-				+0.1
4,674,568	-				-0.4
4,674,568	-				+1.1
4,674,568	-				-1.1
4,674,568	-				+1.3
4,674,568	-				-0.3
4,674,568	-				+0.2
4,674,568	-				+0.8
4,674,568	-				+1.3
4,674,568	-				-0.1
4,674,568	-				+3.9
4,674,611	+				-0.1
4,674,611	+				+0.8
4,674,611	+				-0.7
4,674,611	+				+0.8
4,674,611	+				+0.3
4,674,611	+				+1.8
4,674,612	-				-2.1
4,674,612	-				-0.7
4,674,612	-				+2.5
4,674,612	-				-0.1
4,674,626	+				+3.1
4,674,641	+				+1.0
4,674,641	+				+0.5
4,674,641	+				+0.8
4,674,642	-				-0.3
4,674,642	-				-1.4
4,674,661	+				+1.2
4,674,662	-				+1.9
4,674,662	-				+0.3
4,674,681	+				-0.8
4,674,681	+				+0.4
4,674,682	-				-0.7
4,674,698	+				-0.9
4,674,702	+				-2.7
4,674,702	+				+0.1
4,674,702	+				-0.3
4,674,702	+				-1.3
4,674,702	+				-0.5
4,674,702	+				+0.5
4,674,702	+				-0.9
4,674,703	-				+0.3
4,674,703	-				+2.4
4,674,703	-				-0.5
4,674,703	-				-1.0
4,674,703	-				-0.3
4,674,703	-				-0.3
4,674,834	+		EFB2_04458	0.18	+0.5
4,674,834	+		EFB2_04458	0.18	+1.3
4,674,834	+		EFB2_04458	0.18	-1.4
4,674,835	-		EFB2_04458	0.18	-3.4
4,674,835	-		EFB2_04458	0.18	-0.6
4,674,835	-		EFB2_04458	0.18	+0.9
4,674,835	-		EFB2_04458	0.18	+0.5
4,674,849	+		EFB2_04458	0.19	-1.2
4,674,849	+		EFB2_04458	0.19	+1.8
4,674,865	+		EFB2_04458	0.20	+1.5
4,674,888	+		EFB2_04458	0.21	+0.2
4,674,888	+		EFB2_04458	0.21	-1.2
4,674,888	+		EFB2_04458	0.21	-3.8
4,674,888	+		EFB2_04458	0.21	-0.7
4,674,888	+		EFB2_04458	0.21	+1.1
4,674,889	-		EFB2_04458	0.21	+0.3
4,674,889	-		EFB2_04458	0.21	-0.6
4,674,889	-		EFB2_04458	0.21	-0.0
4,674,903	+		EFB2_04458	0.22	-2.2
4,674,903	+		EFB2_04458	0.22	-1.7
4,674,904	-		EFB2_04458	0.22	-0.4
4,674,904	-		EFB2_04458	0.22	+0.5
4,674,904	-		EFB2_04458	0.22	-0.5
4,674,921	+		EFB2_04458	0.23	+1.0
4,674,922	-		EFB2_04458	0.23	+0.2
4,674,980	+		EFB2_04458	0.27	+0.6
4,674,986	+		EFB2_04458	0.27	+0.8
4,674,986	+		EFB2_04458	0.27	+0.5
4,674,986	+		EFB2_04458	0.27	-2.3
4,674,986	+		EFB2_04458	0.27	-1.1
4,674,986	+		EFB2_04458	0.27	+1.0
4,674,986	+		EFB2_04458	0.27	+0.4
4,674,986	+		EFB2_04458	0.27	-2.4
4,674,987	-		EFB2_04458	0.27	+0.8
4,674,987	-		EFB2_04458	0.27	-0.2
4,674,987	-		EFB2_04458	0.27	-1.5
4,674,990	+		EFB2_04458	0.27	+0.3
4,674,991	-		EFB2_04458	0.27	-4.1
4,675,000	+		EFB2_04458	0.28	-0.3
4,675,000	+		EFB2_04458	0.28	+0.6
4,675,000	+		EFB2_04458	0.28	+0.3
4,675,000	+		EFB2_04458	0.28	-3.3
4,675,000	+		EFB2_04458	0.28	-0.2
4,675,000	+		EFB2_04458	0.28	-3.0
4,675,000	+		EFB2_04458	0.28	-0.5
4,675,000	+		EFB2_04458	0.28	+0.4
4,675,000	+		EFB2_04458	0.28	+1.8
4,675,001	-		EFB2_04458	0.28	-0.6
4,675,001	-		EFB2_04458	0.28	+1.0
4,675,001	-		EFB2_04458	0.28	+1.0
4,675,001	-		EFB2_04458	0.28	-1.3
4,675,001	-		EFB2_04458	0.28	-0.9
4,675,001	-		EFB2_04458	0.28	+0.7
4,675,001	-		EFB2_04458	0.28	-0.1
4,675,001	-		EFB2_04458	0.28	+1.1
4,675,001	-		EFB2_04458	0.28	-0.0
4,675,001	-		EFB2_04458	0.28	+0.1
4,675,001	-		EFB2_04458	0.28	-1.2
4,675,014	+		EFB2_04458	0.29	-0.5
4,675,014	+		EFB2_04458	0.29	-0.7
4,675,050	-		EFB2_04458	0.31	+0.6
4,675,050	-		EFB2_04458	0.31	+1.2
4,675,092	+		EFB2_04458	0.34	-0.7
4,675,092	+		EFB2_04458	0.34	-2.8
4,675,092	+		EFB2_04458	0.34	-2.0
4,675,092	+		EFB2_04458	0.34	-0.4
4,675,093	-		EFB2_04458	0.34	-0.3
4,675,093	-		EFB2_04458	0.34	-1.5
4,675,093	-		EFB2_04458	0.34	-0.9
4,675,104	-		EFB2_04458	0.34	+0.7
4,675,106	+		EFB2_04458	0.34	+0.0
4,675,106	+		EFB2_04458	0.34	-2.0
4,675,106	+		EFB2_04458	0.34	-1.8
4,675,106	+		EFB2_04458	0.34	-1.0
4,675,106	+		EFB2_04458	0.34	-2.4
4,675,106	+		EFB2_04458	0.34	+0.5
4,675,106	+		EFB2_04458	0.34	+1.3
4,675,106	+		EFB2_04458	0.34	-0.1
4,675,106	+		EFB2_04458	0.34	+0.9
4,675,106	+		EFB2_04458	0.34	-0.3
4,675,106	+		EFB2_04458	0.34	-1.8
4,675,106	+		EFB2_04458	0.34	-0.7
4,675,107	-		EFB2_04458	0.34	+0.9
4,675,107	-		EFB2_04458	0.34	-0.6
4,675,107	-		EFB2_04458	0.34	+1.3
4,675,107	-		EFB2_04458	0.34	-0.3
4,675,107	-		EFB2_04458	0.34	+0.1
4,675,107	-		EFB2_04458	0.34	+1.0
4,675,107	-		EFB2_04458	0.34	+0.2
4,675,107	-		EFB2_04458	0.34	+0.1
4,675,107	-		EFB2_04458	0.34	-1.6
4,675,107	-		EFB2_04458	0.34	+0.2
4,675,107	-		EFB2_04458	0.34	+1.2
4,675,154	+		EFB2_04458	0.37	-0.7
4,675,154	+		EFB2_04458	0.37	+0.4
4,675,154	+		EFB2_04458	0.37	+0.4
4,675,155	-		EFB2_04458	0.37	+0.9
4,675,155	-		EFB2_04458	0.37	-0.5
4,675,317	+		EFB2_04458	0.47	+0.7
4,675,317	+		EFB2_04458	0.47	-0.8
4,675,317	+		EFB2_04458	0.47	-0.2
4,675,318	-		EFB2_04458	0.47	+0.3
4,675,318	-		EFB2_04458	0.47	+0.3
4,675,318	-		EFB2_04458	0.47	+0.4
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