Strain Fitness in Escherichia fergusonii Becca around EFB2_03915

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,100,392	+		EFB2_03913	0.64	+1.1
4,100,392	+		EFB2_03913	0.64	-0.3
4,100,393	-		EFB2_03913	0.64	+0.2
4,100,393	-		EFB2_03913	0.64	+0.3
4,100,393	-		EFB2_03913	0.64	-2.7
4,100,431	+		EFB2_03913	0.68	-0.1
4,100,431	+		EFB2_03913	0.68	-0.7
4,100,431	+		EFB2_03913	0.68	+0.7
4,100,431	+		EFB2_03913	0.68	+0.2
4,100,431	+		EFB2_03913	0.68	+1.7
4,100,431	+		EFB2_03913	0.68	-3.7
4,100,432	-		EFB2_03913	0.68	-2.8
4,100,432	-		EFB2_03913	0.68	-0.7
4,100,432	-		EFB2_03913	0.68	+0.7
4,100,432	-		EFB2_03913	0.68	-2.3
4,100,432	-		EFB2_03913	0.68	-0.6
4,100,432	-		EFB2_03913	0.68	+0.8
4,100,432	-		EFB2_03913	0.68	+0.0
4,100,432	-		EFB2_03913	0.68	+0.2
4,100,432	-		EFB2_03913	0.68	+1.2
4,100,432	-		EFB2_03913	0.68	+0.9
4,100,437	-		EFB2_03913	0.69	+0.5
4,100,437	-		EFB2_03913	0.69	+3.1
4,100,464	+		EFB2_03913	0.72	+1.5
4,100,503	-		EFB2_03913	0.76	+0.6
4,100,532	+		EFB2_03913	0.79	+0.5
4,100,532	+		EFB2_03913	0.79	-2.1
4,100,532	+		EFB2_03913	0.79	-1.2
4,100,532	+		EFB2_03913	0.79	-1.5
4,100,533	-		EFB2_03913	0.79	-2.3
4,100,533	-		EFB2_03913	0.79	-0.7
4,100,572	+		EFB2_03913	0.83	+0.7
4,100,622	-		EFB2_03913	0.89	-0.6
4,100,622	-		EFB2_03913	0.89	-1.0
4,100,687	-				+0.9
4,100,687	-				+0.1
4,100,711	-				+1.0
4,100,799	-				+1.4
4,100,806	-				+1.3
4,100,904	+				-0.5
4,100,904	+				+1.5
4,100,904	+				-0.7
4,100,904	+				-0.3
4,100,904	+				+1.0
4,100,904	+				-0.5
4,100,904	+				+0.4
4,100,904	+				+1.1
4,100,905	-				+0.5
4,100,905	-				-2.2
4,100,905	-				+1.1
4,100,905	-				-0.3
4,100,905	-				+0.3
4,100,905	-				+1.4
4,100,929	+				-0.8
4,100,929	+				+0.8
4,100,930	-				-3.4
4,100,930	-				-1.1
4,100,930	-				-1.2
4,100,930	-				+0.5
4,100,983	+				+1.7
4,100,983	+				-2.8
4,100,983	+				-0.4
4,100,983	+				+0.1
4,100,984	-				+0.8
4,100,984	-				+0.5
4,100,984	-				-0.7
4,100,984	-				-1.3
4,100,984	-				-0.1
4,100,991	+				-0.3
4,100,991	+				+0.8
4,100,991	+				+0.1
4,100,998	+				+0.1
4,100,998	+				+0.3
4,100,998	+				+1.3
4,100,998	+				+0.5
4,100,998	+				-0.9
4,100,998	+				+0.3
4,100,999	-				+0.1
4,100,999	-				-1.8
4,100,999	-				-1.7
4,101,062	+		EFB2_03914	0.17	-0.2
4,101,062	+		EFB2_03914	0.17	-3.4
4,101,062	+		EFB2_03914	0.17	-0.3
4,101,062	+		EFB2_03914	0.17	-0.2
4,101,062	+		EFB2_03914	0.17	-2.0
4,101,062	+		EFB2_03914	0.17	+0.5
4,101,062	+		EFB2_03914	0.17	-3.6
4,101,063	-		EFB2_03914	0.17	-3.1
4,101,063	-		EFB2_03914	0.17	+0.5
4,101,063	-		EFB2_03914	0.17	+1.1
4,101,063	-		EFB2_03914	0.17	+0.5
4,101,063	-		EFB2_03914	0.17	-0.7
4,101,109	+		EFB2_03914	0.29	-1.9
4,101,109	+		EFB2_03914	0.29	+1.5
4,101,109	+		EFB2_03914	0.29	-1.8
4,101,109	+		EFB2_03914	0.29	-0.2
4,101,134	-		EFB2_03914	0.35	+0.3
4,101,134	-		EFB2_03914	0.35	+1.0
4,101,170	+		EFB2_03914	0.45	-0.6
4,101,170	+		EFB2_03914	0.45	+0.7
4,101,170	+		EFB2_03914	0.45	-0.1
4,101,170	+		EFB2_03914	0.45	-0.9
4,101,170	+		EFB2_03914	0.45	-0.7
4,101,170	+		EFB2_03914	0.45	-2.8
4,101,170	+		EFB2_03914	0.45	+0.9
4,101,170	+		EFB2_03914	0.45	+0.3
4,101,170	+		EFB2_03914	0.45	+0.2
4,101,170	+		EFB2_03914	0.45	-3.5
4,101,170	+		EFB2_03914	0.45	+0.7
4,101,170	+		EFB2_03914	0.45	+0.1
4,101,170	+		EFB2_03914	0.45	+0.4
4,101,171	-		EFB2_03914	0.45	+1.0
4,101,171	-		EFB2_03914	0.45	+0.1
4,101,171	-		EFB2_03914	0.45	-1.6
4,101,171	-		EFB2_03914	0.45	+0.9
4,101,171	-		EFB2_03914	0.45	-0.3
4,101,171	-		EFB2_03914	0.45	+1.8
4,101,171	-		EFB2_03914	0.45	-2.9
4,101,171	-		EFB2_03914	0.45	+0.3
4,101,171	-		EFB2_03914	0.45	-0.1
4,101,171	-		EFB2_03914	0.45	+2.1
4,101,171	-		EFB2_03914	0.45	-1.3
4,101,171	-		EFB2_03914	0.45	-0.6
4,101,171	-		EFB2_03914	0.45	-1.2
4,101,171	-		EFB2_03914	0.45	-1.3
4,101,171	-		EFB2_03914	0.45	-1.6
4,101,171	-		EFB2_03914	0.45	+0.5
4,101,171	-		EFB2_03914	0.45	+0.9
4,101,171	-		EFB2_03914	0.45	-0.5
4,101,171	-		EFB2_03914	0.45	-3.4
4,101,171	-		EFB2_03914	0.45	-0.3
4,101,171	-		EFB2_03914	0.45	+2.0
4,101,171	-		EFB2_03914	0.45	-0.7
4,101,171	-		EFB2_03914	0.45	-1.0
4,101,171	-		EFB2_03914	0.45	-1.0
4,101,171	-		EFB2_03914	0.45	+2.4
4,101,171	-		EFB2_03914	0.45	-0.2
4,101,171	-		EFB2_03914	0.45	-2.3
4,101,202	+		EFB2_03914	0.53	+0.1
4,101,203	-		EFB2_03914	0.54	+0.2
4,101,248	-		EFB2_03914	0.65	-0.5
4,101,317	+		EFB2_03914	0.83	-0.5
4,101,318	-		EFB2_03914	0.84	+0.2
4,101,346	+				-2.0
4,101,347	-				-0.1
4,101,400	+				+0.3
4,101,440	+				+0.8
4,101,440	+				+1.6
4,101,440	+				-1.9
4,101,440	+				-0.5
4,101,440	+				-1.5
4,101,440	+				+0.5
4,101,440	+				-2.1
4,101,441	-				+2.5
4,101,441	-				-0.1
4,101,441	-				-1.7
4,101,441	-				+0.1
4,101,441	-				+0.4
4,101,441	-				-1.5
4,101,445	+				-0.4
4,101,445	+				+0.7
4,101,446	-				-0.2
4,101,446	-				-0.2
4,101,446	-				+0.3
4,101,446	-				+2.1
4,101,446	-				-0.5
4,101,446	-				-3.6
4,101,447	+				-1.7
4,101,447	+				-0.6
4,101,447	+				+0.4
4,101,447	+				+0.3
4,101,448	-				-0.4
4,101,448	-				-2.5
4,101,448	-				+0.4
4,101,448	-				-0.5
4,101,448	-				+0.6
4,101,448	-				-2.5
4,101,448	-				-1.7
4,101,458	+				-1.0
4,101,458	+				-0.9
4,101,459	-				-0.5
4,101,461	+				+1.8
4,101,461	+				+0.1
4,101,462	-				-0.9
4,101,462	-				+0.7
4,101,462	-				+0.8
4,101,473	-				-0.2
4,101,486	-				+0.0
4,101,486	-				+0.3
4,101,556	+		EFB2_03915	0.14	+1.7
4,101,557	-		EFB2_03915	0.14	-1.1
4,101,574	-		EFB2_03915	0.16	+0.2
4,101,598	+		EFB2_03915	0.17	+1.6
4,101,598	+		EFB2_03915	0.17	-1.0
4,101,598	+		EFB2_03915	0.17	+0.0
4,101,598	+		EFB2_03915	0.17	-1.1
4,101,598	+		EFB2_03915	0.17	-1.4
4,101,599	-		EFB2_03915	0.18	-0.4
4,101,599	-		EFB2_03915	0.18	-0.7
4,101,599	-		EFB2_03915	0.18	-1.0
4,101,643	+		EFB2_03915	0.21	+0.7
4,101,643	+		EFB2_03915	0.21	+0.9
4,101,643	+		EFB2_03915	0.21	-1.3
4,101,643	+		EFB2_03915	0.21	-0.1
4,101,644	-		EFB2_03915	0.21	-0.1
4,101,644	-		EFB2_03915	0.21	-2.3
4,101,644	-		EFB2_03915	0.21	+0.8
4,101,644	-		EFB2_03915	0.21	-2.9
4,101,644	-		EFB2_03915	0.21	+1.3
4,101,644	-		EFB2_03915	0.21	+0.2
4,101,656	-		EFB2_03915	0.22	+1.2
4,101,668	+		EFB2_03915	0.23	-1.1
4,101,668	+		EFB2_03915	0.23	-0.3
4,101,668	+		EFB2_03915	0.23	+0.8
4,101,669	-		EFB2_03915	0.23	-2.0
4,101,669	-		EFB2_03915	0.23	+1.4
4,101,669	-		EFB2_03915	0.23	+0.1
4,101,669	-		EFB2_03915	0.23	+2.6
4,101,669	-		EFB2_03915	0.23	-1.6
4,101,670	+		EFB2_03915	0.23	-2.3
4,101,670	+		EFB2_03915	0.23	+0.5
4,101,670	+		EFB2_03915	0.23	-0.2
4,101,670	+		EFB2_03915	0.23	+0.4
4,101,670	+		EFB2_03915	0.23	+0.9
4,101,670	+		EFB2_03915	0.23	+0.7
4,101,670	+		EFB2_03915	0.23	+0.6
4,101,671	-		EFB2_03915	0.23	-2.4
4,101,671	-		EFB2_03915	0.23	+0.3
4,101,689	+		EFB2_03915	0.25	+0.7
4,101,689	+		EFB2_03915	0.25	-0.5
4,101,689	+		EFB2_03915	0.25	+1.8
4,101,689	+		EFB2_03915	0.25	+1.3
4,101,690	-		EFB2_03915	0.25	+1.4
4,101,690	-		EFB2_03915	0.25	-0.7
4,101,690	-		EFB2_03915	0.25	-2.8
4,101,690	-		EFB2_03915	0.25	-0.4
4,101,690	-		EFB2_03915	0.25	+4.3
4,101,709	+		EFB2_03915	0.27	-2.4
4,101,709	+		EFB2_03915	0.27	+1.1
4,101,710	-		EFB2_03915	0.27	+1.9
4,101,710	-		EFB2_03915	0.27	-1.6
4,101,728	+		EFB2_03915	0.28	-0.2
4,101,728	+		EFB2_03915	0.28	+1.8
4,101,729	-		EFB2_03915	0.28	+1.1
4,101,746	-		EFB2_03915	0.30	+1.2
4,101,764	-		EFB2_03915	0.31	+0.5
4,101,764	-		EFB2_03915	0.31	+1.1
4,101,817	+		EFB2_03915	0.35	-2.1
4,101,817	+		EFB2_03915	0.35	+0.6
4,101,818	-		EFB2_03915	0.35	+3.7
4,101,823	+		EFB2_03915	0.36	+0.9
4,101,841	+		EFB2_03915	0.37	+0.5
4,101,841	+		EFB2_03915	0.37	-0.4
4,101,841	+		EFB2_03915	0.37	+2.0
4,101,841	+		EFB2_03915	0.37	+0.9
4,101,841	+		EFB2_03915	0.37	+0.9
4,101,841	+		EFB2_03915	0.37	+0.5
4,101,841	+		EFB2_03915	0.37	+1.3
4,101,841	+		EFB2_03915	0.37	-0.6
4,101,841	+		EFB2_03915	0.37	-0.5
4,101,842	-		EFB2_03915	0.37	+1.2
4,101,842	-		EFB2_03915	0.37	+0.1
4,101,842	-		EFB2_03915	0.37	+0.8
4,101,842	-		EFB2_03915	0.37	+0.5
4,101,842	-		EFB2_03915	0.37	-0.1
4,101,842	-		EFB2_03915	0.37	-2.1
4,101,842	-		EFB2_03915	0.37	-1.5
4,101,842	-		EFB2_03915	0.37	+1.0
4,101,842	-		EFB2_03915	0.37	+0.5
4,101,842	-		EFB2_03915	0.37	-1.7
4,101,842	-		EFB2_03915	0.37	-1.0
4,101,842	-		EFB2_03915	0.37	-1.7
4,101,842	-		EFB2_03915	0.37	-3.6
4,101,842	-		EFB2_03915	0.37	-2.3
4,101,846	+		EFB2_03915	0.38	+0.5
4,101,846	+		EFB2_03915	0.38	+1.4
4,101,846	+		EFB2_03915	0.38	-2.1
4,101,847	-		EFB2_03915	0.38	+0.2
4,101,847	-		EFB2_03915	0.38	+1.3
4,101,864	+		EFB2_03915	0.39	-0.6
4,101,865	-		EFB2_03915	0.39	+0.1
4,101,865	-		EFB2_03915	0.39	+0.6
4,101,904	+		EFB2_03915	0.42	+1.0
4,101,904	+		EFB2_03915	0.42	+0.9
4,101,904	+		EFB2_03915	0.42	-1.4
4,101,905	-		EFB2_03915	0.42	-2.7
4,101,905	-		EFB2_03915	0.42	+0.0
4,101,905	-		EFB2_03915	0.42	-0.5
4,101,905	-		EFB2_03915	0.42	+1.3
4,101,905	-		EFB2_03915	0.42	+2.0
4,101,905	-		EFB2_03915	0.42	-1.0
4,101,905	-		EFB2_03915	0.42	-0.7
4,101,908	+		EFB2_03915	0.43	+1.1
4,101,908	+		EFB2_03915	0.43	-0.2
4,101,908	+		EFB2_03915	0.43	-2.1
4,101,909	-		EFB2_03915	0.43	+1.3
4,101,909	-		EFB2_03915	0.43	+0.6
4,101,909	-		EFB2_03915	0.43	+0.1
4,101,937	+		EFB2_03915	0.45	+1.3
4,101,937	+		EFB2_03915	0.45	+1.2
4,101,937	+		EFB2_03915	0.45	-0.9
4,101,938	-		EFB2_03915	0.45	-0.4
4,101,938	-		EFB2_03915	0.45	+1.1
4,101,938	-		EFB2_03915	0.45	+0.4
4,101,948	+		EFB2_03915	0.46	+0.2
4,101,948	+		EFB2_03915	0.46	+0.2
4,101,949	-		EFB2_03915	0.46	-1.1
4,101,949	-		EFB2_03915	0.46	-2.8
4,102,045	+		EFB2_03915	0.54	-1.3
4,102,045	+		EFB2_03915	0.54	-0.5
4,102,046	-		EFB2_03915	0.54	-1.2
4,102,046	-		EFB2_03915	0.54	-1.8
4,102,046	-		EFB2_03915	0.54	+0.8
4,102,046	-		EFB2_03915	0.54	-2.9
4,102,081	+		EFB2_03915	0.57	+0.0
4,102,081	+		EFB2_03915	0.57	+1.1
4,102,081	+		EFB2_03915	0.57	+0.5
4,102,081	+		EFB2_03915	0.57	-0.7
4,102,081	+		EFB2_03915	0.57	+1.6
4,102,082	-		EFB2_03915	0.57	-1.6
4,102,089	+		EFB2_03915	0.57	+0.4
4,102,089	+		EFB2_03915	0.57	-0.6
4,102,089	+		EFB2_03915	0.57	-1.7
4,102,089	+		EFB2_03915	0.57	+0.8
4,102,089	+		EFB2_03915	0.57	+0.1
4,102,089	+		EFB2_03915	0.57	-1.8
4,102,089	+		EFB2_03915	0.57	+2.4
4,102,089	+		EFB2_03915	0.57	-0.3
4,102,089	+		EFB2_03915	0.57	-0.9
4,102,090	-		EFB2_03915	0.57	+0.5
4,102,090	-		EFB2_03915	0.57	-2.1
4,102,090	-		EFB2_03915	0.57	-3.1
4,102,090	-		EFB2_03915	0.57	+1.5
4,102,090	-		EFB2_03915	0.57	-3.5
4,102,090	-		EFB2_03915	0.57	-1.1
4,102,090	-		EFB2_03915	0.57	+0.7
4,102,090	-		EFB2_03915	0.57	-0.2
4,102,090	-		EFB2_03915	0.57	-0.6
4,102,090	-		EFB2_03915	0.57	-2.1
4,102,138	+		EFB2_03915	0.61	+0.4
4,102,138	+		EFB2_03915	0.61	+0.8
4,102,138	+		EFB2_03915	0.61	+1.2
4,102,138	+		EFB2_03915	0.61	+0.9
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4,103,364	+		EFB2_03917	0.19	-2.0
4,103,364	+		EFB2_03917	0.19	+0.1
4,103,364	+		EFB2_03917	0.19	+1.1
4,103,364	+		EFB2_03917	0.19	-0.4
4,103,364	+		EFB2_03917	0.19	+0.8
4,103,364	+		EFB2_03917	0.19	+1.8
4,103,364	+		EFB2_03917	0.19	-1.3
4,103,365	-		EFB2_03917	0.19	+0.5
4,103,365	-		EFB2_03917	0.19	+0.4
4,103,365	-		EFB2_03917	0.19	+0.8
4,103,365	-		EFB2_03917	0.19	+0.4
4,103,366	+		EFB2_03917	0.19	+0.9
4,103,366	+		EFB2_03917	0.19	+1.1
4,103,366	+		EFB2_03917	0.19	-2.3
4,103,366	+		EFB2_03917	0.19	+1.0
4,103,367	-		EFB2_03917	0.19	+0.9
4,103,367	-		EFB2_03917	0.19	-1.2
4,103,367	-		EFB2_03917	0.19	-0.5
4,103,367	-		EFB2_03917	0.19	-2.5
4,103,426	+		EFB2_03917	0.27	+1.1
4,103,426	+		EFB2_03917	0.27	+0.6
4,103,427	-		EFB2_03917	0.27	-0.9
4,103,427	-		EFB2_03917	0.27	+2.0
4,103,427	-		EFB2_03917	0.27	-1.1
4,103,427	-		EFB2_03917	0.27	-0.2
4,103,427	-		EFB2_03917	0.27	-1.3
4,103,427	-		EFB2_03917	0.27	-0.4
4,103,444	+		EFB2_03917	0.29	-3.0
4,103,444	+		EFB2_03917	0.29	+0.4
4,103,444	+		EFB2_03917	0.29	-0.3
4,103,444	+		EFB2_03917	0.29	-2.0
4,103,445	-		EFB2_03917	0.29	-2.3
4,103,445	-		EFB2_03917	0.29	-0.0
4,103,445	-		EFB2_03917	0.29	-3.2
4,103,536	+		EFB2_03917	0.41	+0.1
4,103,536	+		EFB2_03917	0.41	+2.4
4,103,536	+		EFB2_03917	0.41	-2.1
4,103,536	+		EFB2_03917	0.41	-0.4
4,103,536	+		EFB2_03917	0.41	+0.6
4,103,536	+		EFB2_03917	0.41	+0.8
4,103,536	+		EFB2_03917	0.41	+0.4
4,103,537	-		EFB2_03917	0.41	+0.6
4,103,537	-		EFB2_03917	0.41	-1.3
4,103,537	-		EFB2_03917	0.41	+0.3
4,103,537	-		EFB2_03917	0.41	-1.3
4,103,537	-		EFB2_03917	0.41	-2.2
4,103,537	-		EFB2_03917	0.41	-0.6
4,103,537	-		EFB2_03917	0.41	+0.6
4,103,537	-		EFB2_03917	0.41	+0.2
4,103,537	-		EFB2_03917	0.41	-0.1
4,103,561	-		EFB2_03917	0.44	+0.5
4,103,573	-		EFB2_03917	0.46	+2.0