Strain Fitness in Escherichia fergusonii Becca around EFB2_03608

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,770,060	+		EFB2_03606	0.68	-1.8
3,770,060	+		EFB2_03606	0.68	+0.8
3,770,060	+		EFB2_03606	0.68	+0.9
3,770,060	+		EFB2_03606	0.68	+0.9
3,770,060	+		EFB2_03606	0.68	-1.6
3,770,060	+		EFB2_03606	0.68	-3.2
3,770,060	+		EFB2_03606	0.68	+0.7
3,770,060	+		EFB2_03606	0.68	+0.5
3,770,060	+		EFB2_03606	0.68	-0.5
3,770,060	+		EFB2_03606	0.68	+0.6
3,770,061	-		EFB2_03606	0.68	-1.5
3,770,061	-		EFB2_03606	0.68	-0.9
3,770,061	-		EFB2_03606	0.68	-2.6
3,770,061	-		EFB2_03606	0.68	-1.6
3,770,061	-		EFB2_03606	0.68	-0.4
3,770,061	-		EFB2_03606	0.68	-3.0
3,770,070	-		EFB2_03606	0.69	+1.2
3,770,070	-		EFB2_03606	0.69	-0.1
3,770,074	+		EFB2_03606	0.69	-2.3
3,770,075	-		EFB2_03606	0.69	+2.0
3,770,075	-		EFB2_03606	0.69	-2.5
3,770,075	-		EFB2_03606	0.69	+0.8
3,770,110	+		EFB2_03606	0.72	-3.4
3,770,110	+		EFB2_03606	0.72	+0.7
3,770,110	+		EFB2_03606	0.72	-1.2
3,770,110	+		EFB2_03606	0.72	+0.9
3,770,110	+		EFB2_03606	0.72	+0.5
3,770,111	-		EFB2_03606	0.72	+0.0
3,770,111	-		EFB2_03606	0.72	-1.1
3,770,111	-		EFB2_03606	0.72	-0.5
3,770,111	-		EFB2_03606	0.72	+0.3
3,770,111	-		EFB2_03606	0.72	+1.1
3,770,111	-		EFB2_03606	0.72	+1.1
3,770,112	+		EFB2_03606	0.72	+0.2
3,770,112	+		EFB2_03606	0.72	-0.4
3,770,112	+		EFB2_03606	0.72	-1.8
3,770,112	+		EFB2_03606	0.72	-1.1
3,770,112	+		EFB2_03606	0.72	+0.9
3,770,112	+		EFB2_03606	0.72	-0.6
3,770,112	+		EFB2_03606	0.72	+0.2
3,770,112	+		EFB2_03606	0.72	-2.3
3,770,112	+		EFB2_03606	0.72	-1.8
3,770,112	+		EFB2_03606	0.72	-0.9
3,770,113	-		EFB2_03606	0.72	+0.8
3,770,113	-		EFB2_03606	0.72	-0.3
3,770,113	-		EFB2_03606	0.72	+0.9
3,770,113	-		EFB2_03606	0.72	+0.4
3,770,113	-		EFB2_03606	0.72	-0.6
3,770,113	-		EFB2_03606	0.72	-0.5
3,770,113	-		EFB2_03606	0.72	+0.0
3,770,113	-		EFB2_03606	0.72	-0.4
3,770,113	-		EFB2_03606	0.72	+0.2
3,770,113	-		EFB2_03606	0.72	+0.8
3,770,113	-		EFB2_03606	0.72	+1.3
3,770,113	-		EFB2_03606	0.72	-2.8
3,770,113	-		EFB2_03606	0.72	+0.2
3,770,113	-		EFB2_03606	0.72	+0.7
3,770,113	-		EFB2_03606	0.72	+0.3
3,770,113	-		EFB2_03606	0.72	-0.1
3,770,113	-		EFB2_03606	0.72	+0.1
3,770,118	+		EFB2_03606	0.73	+0.3
3,770,118	+		EFB2_03606	0.73	+2.0
3,770,118	+		EFB2_03606	0.73	-2.5
3,770,118	+		EFB2_03606	0.73	+2.3
3,770,118	+		EFB2_03606	0.73	+0.7
3,770,118	+		EFB2_03606	0.73	+0.1
3,770,119	-		EFB2_03606	0.73	-2.1
3,770,119	-		EFB2_03606	0.73	-3.7
3,770,119	-		EFB2_03606	0.73	-0.1
3,770,119	-		EFB2_03606	0.73	+0.2
3,770,119	-		EFB2_03606	0.73	-2.6
3,770,119	-		EFB2_03606	0.73	-0.9
3,770,119	-		EFB2_03606	0.73	-1.5
3,770,122	+		EFB2_03606	0.73	-1.9
3,770,122	+		EFB2_03606	0.73	-0.5
3,770,122	+		EFB2_03606	0.73	+1.0
3,770,122	+		EFB2_03606	0.73	-2.8
3,770,122	+		EFB2_03606	0.73	+0.2
3,770,122	+		EFB2_03606	0.73	+0.9
3,770,123	-		EFB2_03606	0.73	-0.7
3,770,123	-		EFB2_03606	0.73	-0.7
3,770,123	-		EFB2_03606	0.73	+0.6
3,770,123	-		EFB2_03606	0.73	+2.1
3,770,123	-		EFB2_03606	0.73	-3.6
3,770,123	-		EFB2_03606	0.73	-0.1
3,770,236	+		EFB2_03606	0.82	-1.5
3,770,236	+		EFB2_03606	0.82	-1.7
3,770,237	-		EFB2_03606	0.82	-0.9
3,770,310	+		EFB2_03606	0.87	+0.7
3,770,310	+		EFB2_03606	0.87	+0.7
3,770,310	+		EFB2_03606	0.87	-2.6
3,770,310	+		EFB2_03606	0.87	-3.3
3,770,310	+		EFB2_03606	0.87	-0.5
3,770,310	+		EFB2_03606	0.87	+0.5
3,770,310	+		EFB2_03606	0.87	-4.1
3,770,310	+		EFB2_03606	0.87	+0.0
3,770,311	-		EFB2_03606	0.88	-1.2
3,770,338	+		EFB2_03606	0.90	+0.4
3,770,338	+		EFB2_03606	0.90	-0.2
3,770,338	+		EFB2_03606	0.90	-1.8
3,770,338	+		EFB2_03606	0.90	-3.3
3,770,357	-				+0.7
3,770,368	+				-0.8
3,770,440	+				-0.7
3,770,440	+				+1.0
3,770,441	-				+0.7
3,770,441	-				-2.2
3,770,441	-				+1.3
3,770,441	-				+0.4
3,770,441	-				-1.9
3,770,462	+				-1.5
3,770,462	+				-1.3
3,770,462	+				-1.5
3,770,462	+				-1.9
3,770,462	+				-0.7
3,770,462	+				+1.0
3,770,462	+				-0.1
3,770,462	+				-3.0
3,770,462	+				-0.2
3,770,462	+				-0.7
3,770,462	+				-1.2
3,770,462	+				-3.1
3,770,463	-				-0.4
3,770,463	-				-1.9
3,770,463	-				+1.4
3,770,463	-				+0.8
3,770,463	-				+1.9
3,770,463	-				-1.9
3,770,463	-				-1.9
3,770,463	-				-0.3
3,770,467	-				+0.5
3,770,501	+				+0.3
3,770,501	+				+1.3
3,770,502	-				+0.9
3,770,502	-				-1.5
3,770,594	+		EFB2_03607	0.28	+0.9
3,770,594	+		EFB2_03607	0.28	+1.7
3,770,594	+		EFB2_03607	0.28	-0.5
3,770,595	-		EFB2_03607	0.28	+0.2
3,770,595	-		EFB2_03607	0.28	+0.5
3,770,595	-		EFB2_03607	0.28	-2.4
3,770,615	+		EFB2_03607	0.34	-2.6
3,770,663	-		EFB2_03607	0.48	+0.4
3,770,663	-		EFB2_03607	0.48	+0.5
3,770,687	+		EFB2_03607	0.55	-0.1
3,770,687	+		EFB2_03607	0.55	+0.4
3,770,688	-		EFB2_03607	0.55	-1.1
3,770,766	+		EFB2_03607	0.78	-0.2
3,770,766	+		EFB2_03607	0.78	+1.7
3,770,766	+		EFB2_03607	0.78	-2.0
3,770,766	+		EFB2_03607	0.78	+3.3
3,770,767	-		EFB2_03607	0.79	+1.0
3,770,780	-		EFB2_03607	0.83	-0.8
3,770,819	-				-1.2
3,770,819	-				-0.1
3,770,838	+				+0.9
3,770,838	+				+1.2
3,770,838	+				+0.5
3,770,838	+				-1.3
3,770,838	+				-1.3
3,770,838	+				+1.3
3,770,838	+				+2.1
3,770,838	+				+1.0
3,770,838	+				-0.4
3,770,838	+				+1.4
3,770,838	+				+0.7
3,770,838	+				+0.2
3,770,838	+				-2.1
3,770,838	+				+1.7
3,770,838	+				+1.0
3,770,838	+				-0.2
3,770,838	+				+0.5
3,770,838	+				+2.3
3,770,838	+				-2.1
3,770,838	+				-1.1
3,770,838	+				+0.8
3,770,839	-				+1.1
3,770,839	-				+0.3
3,770,839	-				+0.1
3,770,839	-				-0.4
3,770,839	-				-1.1
3,770,839	-				-0.9
3,770,839	-				+0.1
3,770,839	-				+1.1
3,770,839	-				-0.7
3,770,839	-				-0.3
3,770,839	-				-2.5
3,770,839	-				-0.5
3,770,839	-				+2.9
3,770,839	-				-0.2
3,770,839	-				-3.1
3,770,839	-				-0.7
3,770,839	-				+0.1
3,770,839	-				-0.1
3,770,839	-				-2.3
3,770,839	-				+0.3
3,770,839	-				-1.9
3,770,839	-				-0.4
3,770,839	-				-1.4
3,770,839	-				+0.9
3,770,839	-				+1.5
3,770,839	-				+0.9
3,770,839	-				+0.6
3,770,839	-				-2.6
3,770,875	+				+1.1
3,770,888	+				+1.0
3,770,889	-				+0.0
3,770,889	-				-0.8
3,770,889	-				-0.2
3,770,938	+				+1.1
3,770,939	-				-1.5
3,770,939	-				-0.2
3,770,964	+				-1.5
3,770,964	+				+0.8
3,770,964	+				+0.1
3,770,964	+				+1.0
3,770,965	-				-0.5
3,770,965	-				-1.1
3,770,984	+				-2.6
3,771,008	+				+1.1
3,771,008	+				-1.0
3,771,009	-				+0.5
3,771,009	-				+0.4
3,771,086	+				+0.6
3,771,086	+				-0.8
3,771,086	+				-0.2
3,771,086	+				-1.6
3,771,086	+				-3.3
3,771,086	+				-0.2
3,771,086	+				-2.6
3,771,086	+				-0.1
3,771,086	+				-0.4
3,771,086	+				+0.4
3,771,086	+				+0.9
3,771,086	+				-2.3
3,771,086	+				+0.8
3,771,086	+				+0.5
3,771,086	+				+0.3
3,771,086	+				-0.0
3,771,086	+				-0.3
3,771,086	+				+0.8
3,771,086	+				+1.4
3,771,086	+				+0.3
3,771,086	+				-1.2
3,771,086	+				-0.1
3,771,086	+				+0.6
3,771,087	-				+1.4
3,771,087	-				-0.5
3,771,087	-				-1.4
3,771,087	-				-0.5
3,771,087	-				+0.3
3,771,087	-				-0.7
3,771,087	-				-2.0
3,771,087	-				-1.7
3,771,087	-				-0.2
3,771,087	-				+0.7
3,771,087	-				+0.8
3,771,087	-				-1.2
3,771,087	-				-2.5
3,771,087	-				+0.9
3,771,087	-				+1.2
3,771,087	-				+2.7
3,771,087	-				+2.3
3,771,087	-				+0.3
3,771,087	-				+2.3
3,771,098	+				-0.8
3,771,189	+				+0.6
3,771,189	+				-1.9
3,771,189	+				+1.6
3,771,189	+				+2.5
3,771,189	+				+1.4
3,771,189	+				-1.1
3,771,189	+				-0.1
3,771,189	+				+0.7
3,771,189	+				-1.4
3,771,190	-				+0.6
3,771,190	-				-0.2
3,771,222	+		EFB2_03608	0.11	-2.6
3,771,222	+		EFB2_03608	0.11	-0.2
3,771,222	+		EFB2_03608	0.11	+1.4
3,771,222	+		EFB2_03608	0.11	-0.5
3,771,222	+		EFB2_03608	0.11	-1.9
3,771,222	+		EFB2_03608	0.11	+0.1
3,771,222	+		EFB2_03608	0.11	+0.7
3,771,222	+		EFB2_03608	0.11	+0.7
3,771,222	+		EFB2_03608	0.11	-0.5
3,771,222	+		EFB2_03608	0.11	+1.5
3,771,222	+		EFB2_03608	0.11	-0.7
3,771,222	+		EFB2_03608	0.11	-1.1
3,771,222	+		EFB2_03608	0.11	-0.9
3,771,222	+		EFB2_03608	0.11	+1.2
3,771,222	+		EFB2_03608	0.11	+0.8
3,771,222	+		EFB2_03608	0.11	+0.5
3,771,222	+		EFB2_03608	0.11	-2.6
3,771,222	+		EFB2_03608	0.11	+0.1
3,771,222	+		EFB2_03608	0.11	+0.9
3,771,222	+		EFB2_03608	0.11	+0.5
3,771,222	+		EFB2_03608	0.11	-0.9
3,771,222	+		EFB2_03608	0.11	+1.1
3,771,222	+		EFB2_03608	0.11	+0.8
3,771,222	+		EFB2_03608	0.11	+1.2
3,771,223	-		EFB2_03608	0.11	+1.2
3,771,223	-		EFB2_03608	0.11	-1.3
3,771,223	-		EFB2_03608	0.11	+1.1
3,771,223	-		EFB2_03608	0.11	+0.4
3,771,223	-		EFB2_03608	0.11	+1.4
3,771,223	-		EFB2_03608	0.11	-0.9
3,771,223	-		EFB2_03608	0.11	-1.2
3,771,223	-		EFB2_03608	0.11	-0.7
3,771,223	-		EFB2_03608	0.11	-1.8
3,771,223	-		EFB2_03608	0.11	-2.1
3,771,223	-		EFB2_03608	0.11	-0.7
3,771,223	-		EFB2_03608	0.11	+1.1
3,771,223	-		EFB2_03608	0.11	-0.6
3,771,223	-		EFB2_03608	0.11	-1.0
3,771,223	-		EFB2_03608	0.11	-0.3
3,771,223	-		EFB2_03608	0.11	-0.6
3,771,223	-		EFB2_03608	0.11	+0.7
3,771,223	-		EFB2_03608	0.11	-3.0
3,771,225	+		EFB2_03608	0.12	-0.1
3,771,225	+		EFB2_03608	0.12	+1.1
3,771,225	+		EFB2_03608	0.12	+2.7
3,771,225	+		EFB2_03608	0.12	-2.6
3,771,225	+		EFB2_03608	0.12	-0.5
3,771,225	+		EFB2_03608	0.12	-3.1
3,771,225	+		EFB2_03608	0.12	-0.4
3,771,225	+		EFB2_03608	0.12	-3.0
3,771,225	+		EFB2_03608	0.12	+2.0
3,771,225	+		EFB2_03608	0.12	-3.1
3,771,225	+		EFB2_03608	0.12	+0.7
3,771,225	+		EFB2_03608	0.12	-1.4
3,771,225	+		EFB2_03608	0.12	+0.2
3,771,225	+		EFB2_03608	0.12	+0.8
3,771,226	-		EFB2_03608	0.12	+0.6
3,771,226	-		EFB2_03608	0.12	+0.8
3,771,226	-		EFB2_03608	0.12	+1.5
3,771,226	-		EFB2_03608	0.12	-2.0
3,771,226	-		EFB2_03608	0.12	-1.5
3,771,226	-		EFB2_03608	0.12	+1.0
3,771,226	-		EFB2_03608	0.12	-1.1
3,771,226	-		EFB2_03608	0.12	-1.9
3,771,226	-		EFB2_03608	0.12	+0.4
3,771,226	-		EFB2_03608	0.12	-3.0
3,771,226	-		EFB2_03608	0.12	+1.4
3,771,226	-		EFB2_03608	0.12	+0.8
3,771,226	-		EFB2_03608	0.12	+0.7
3,771,226	-		EFB2_03608	0.12	-0.4
3,771,226	-		EFB2_03608	0.12	-0.7
3,771,375	+		EFB2_03608	0.20	+2.1
3,771,375	+		EFB2_03608	0.20	-1.0
3,771,376	-		EFB2_03608	0.20	+1.2
3,771,376	-		EFB2_03608	0.20	-1.8
3,771,401	+		EFB2_03608	0.21	-1.1
3,771,401	+		EFB2_03608	0.21	+2.1
3,771,402	-		EFB2_03608	0.21	+0.5
3,771,402	-		EFB2_03608	0.21	-0.8
3,771,402	-		EFB2_03608	0.21	-0.7
3,771,402	-		EFB2_03608	0.21	-1.0
3,771,402	-		EFB2_03608	0.21	+0.1
3,771,402	-		EFB2_03608	0.21	-0.2
3,771,405	+		EFB2_03608	0.22	-1.6
3,771,405	+		EFB2_03608	0.22	+0.9
3,771,405	+		EFB2_03608	0.22	+2.1
3,771,405	+		EFB2_03608	0.22	+0.5
3,771,405	+		EFB2_03608	0.22	+1.0
3,771,406	-		EFB2_03608	0.22	-2.0
3,771,406	-		EFB2_03608	0.22	+0.3
3,771,406	-		EFB2_03608	0.22	+1.6
3,771,406	-		EFB2_03608	0.22	+0.6
3,771,406	-		EFB2_03608	0.22	-1.5
3,771,406	-		EFB2_03608	0.22	+0.6
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