Strain Fitness in Escherichia fergusonii Becca around EFB2_03425

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,579,491	+		EFB2_03424	0.66	-0.0
3,579,491	+		EFB2_03424	0.66	-1.8
3,579,491	+		EFB2_03424	0.66	-0.6
3,579,491	+		EFB2_03424	0.66	-2.3
3,579,491	+		EFB2_03424	0.66	+0.1
3,579,491	+		EFB2_03424	0.66	-0.1
3,579,491	+		EFB2_03424	0.66	+0.6
3,579,491	+		EFB2_03424	0.66	-0.5
3,579,491	+		EFB2_03424	0.66	-0.9
3,579,492	-		EFB2_03424	0.66	-0.7
3,579,504	+		EFB2_03424	0.67	+1.1
3,579,504	+		EFB2_03424	0.67	+1.0
3,579,505	-		EFB2_03424	0.67	-0.3
3,579,505	-		EFB2_03424	0.67	-0.4
3,579,675	+		EFB2_03424	0.76	+0.1
3,579,675	+		EFB2_03424	0.76	-0.3
3,579,686	-		EFB2_03424	0.76	-1.8
3,579,701	+		EFB2_03424	0.77	-1.1
3,579,795	+		EFB2_03424	0.82	+0.8
3,579,795	+		EFB2_03424	0.82	+0.1
3,579,795	+		EFB2_03424	0.82	+1.2
3,579,796	-		EFB2_03424	0.82	-0.6
3,579,796	-		EFB2_03424	0.82	-0.4
3,579,796	-		EFB2_03424	0.82	-1.7
3,579,813	+		EFB2_03424	0.83	-0.6
3,579,813	+		EFB2_03424	0.83	+1.6
3,579,814	-		EFB2_03424	0.83	+0.2
3,579,815	+		EFB2_03424	0.83	+1.5
3,579,815	+		EFB2_03424	0.83	-2.0
3,579,815	+		EFB2_03424	0.83	+1.0
3,579,815	+		EFB2_03424	0.83	-2.2
3,579,815	+		EFB2_03424	0.83	-0.8
3,579,815	+		EFB2_03424	0.83	+1.1
3,579,815	+		EFB2_03424	0.83	-0.5
3,579,816	-		EFB2_03424	0.83	-2.5
3,579,816	-		EFB2_03424	0.83	+1.2
3,579,816	-		EFB2_03424	0.83	-0.0
3,579,816	-		EFB2_03424	0.83	+0.2
3,579,816	-		EFB2_03424	0.83	+0.8
3,579,816	-		EFB2_03424	0.83	+0.6
3,579,816	-		EFB2_03424	0.83	-1.5
3,579,816	-		EFB2_03424	0.83	+0.3
3,579,816	-		EFB2_03424	0.83	+0.4
3,579,816	-		EFB2_03424	0.83	+0.8
3,579,816	-		EFB2_03424	0.83	+0.0
3,579,816	-		EFB2_03424	0.83	+0.9
3,579,816	-		EFB2_03424	0.83	+0.6
3,579,816	-		EFB2_03424	0.83	+0.9
3,579,816	-		EFB2_03424	0.83	-0.3
3,579,816	-		EFB2_03424	0.83	+1.1
3,579,856	+		EFB2_03424	0.85	-3.6
3,579,856	+		EFB2_03424	0.85	-2.1
3,579,856	+		EFB2_03424	0.85	-2.2
3,579,857	-		EFB2_03424	0.85	-0.3
3,579,857	-		EFB2_03424	0.85	-2.5
3,579,867	+		EFB2_03424	0.85	+1.1
3,579,911	+		EFB2_03424	0.88	-3.8
3,579,911	+		EFB2_03424	0.88	+0.7
3,579,911	+		EFB2_03424	0.88	-1.7
3,579,911	+		EFB2_03424	0.88	+3.2
3,579,912	-		EFB2_03424	0.88	-0.7
3,579,912	-		EFB2_03424	0.88	-2.9
3,579,912	-		EFB2_03424	0.88	+1.1
3,579,912	-		EFB2_03424	0.88	+0.1
3,579,912	-		EFB2_03424	0.88	+1.1
3,579,916	+		EFB2_03424	0.88	-3.0
3,579,916	+		EFB2_03424	0.88	-2.1
3,579,917	-		EFB2_03424	0.88	-2.2
3,579,917	-		EFB2_03424	0.88	+0.3
3,579,917	-		EFB2_03424	0.88	-1.6
3,579,989	-				+1.5
3,579,989	-				-2.3
3,579,989	-				-0.1
3,580,030	-				+0.2
3,580,030	-				-0.6
3,580,041	+				-0.3
3,580,041	+				+1.7
3,580,041	+				-2.6
3,580,041	+				+0.4
3,580,041	+				+0.6
3,580,041	+				+2.5
3,580,041	+				+0.5
3,580,041	+				+1.7
3,580,041	+				+1.8
3,580,042	-				-0.0
3,580,042	-				-1.3
3,580,042	-				+0.1
3,580,042	-				-1.1
3,580,042	-				+0.6
3,580,042	-				-2.0
3,580,042	-				-1.2
3,580,045	+				-1.8
3,580,045	+				-2.3
3,580,045	+				+0.0
3,580,045	+				+1.5
3,580,045	+				+2.8
3,580,046	-				-0.5
3,580,046	-				-2.2
3,580,046	-				-0.6
3,580,046	-				+0.2
3,580,108	+				-0.7
3,580,139	-				-0.1
3,580,139	-				+0.1
3,580,143	+				-0.6
3,580,144	-				-2.2
3,580,152	+				-0.5
3,580,152	+				+1.3
3,580,152	+				-2.2
3,580,153	-				-2.0
3,580,153	-				-0.6
3,580,153	-				+1.0
3,580,153	-				-0.4
3,580,153	-				+0.6
3,580,153	-				+0.0
3,580,153	-				+0.1
3,580,153	-				-0.2
3,580,153	-				+1.7
3,580,153	-				-0.7
3,580,162	-				+0.2
3,580,172	+				-0.2
3,580,172	+				-1.1
3,580,172	+				+2.0
3,580,173	-				-1.0
3,580,173	-				+0.1
3,580,173	-				+1.8
3,580,173	-				+1.0
3,580,186	-				+0.5
3,580,186	-				-1.8
3,580,186	-				-2.0
3,580,193	+				+1.2
3,580,193	+				+1.5
3,580,194	-				+0.2
3,580,194	-				+1.4
3,580,199	+				+0.3
3,580,200	-				-0.5
3,580,216	+				+1.4
3,580,217	-				-1.3
3,580,217	-				-1.9
3,580,217	-				-0.4
3,580,232	+				+0.6
3,580,244	+				-0.0
3,580,245	-				-1.4
3,580,245	-				+0.2
3,580,245	-				+0.2
3,580,245	-				+1.2
3,580,256	+				-3.1
3,580,256	+				-2.7
3,580,256	+				-2.0
3,580,257	-				-0.3
3,580,327	-				+0.1
3,580,327	-				+0.9
3,580,348	+				-1.1
3,580,348	+				+1.1
3,580,349	-				+0.1
3,580,349	-				+2.1
3,580,425	+				-1.4
3,580,426	-				+1.6
3,580,426	-				-1.2
3,580,431	+				-0.8
3,580,432	-				-1.1
3,580,432	-				+0.3
3,580,432	-				-0.9
3,580,432	-				+1.4
3,580,432	-				-0.9
3,580,441	+				+0.1
3,580,442	-				-1.8
3,580,457	+				-3.0
3,580,458	-				-0.2
3,580,458	-				-2.8
3,580,458	-				+1.9
3,580,464	+				-0.3
3,580,464	+				-0.1
3,580,464	+				-1.0
3,580,464	+				+1.4
3,580,464	+				+0.5
3,580,465	-				+0.0
3,580,468	+				-0.3
3,580,468	+				+0.9
3,580,468	+				+0.0
3,580,468	+				-1.0
3,580,468	+				+2.3
3,580,469	-				-3.1
3,580,469	-				-0.7
3,580,469	-				+1.1
3,580,469	-				+0.9
3,580,480	+				+0.5
3,580,502	+				-1.9
3,580,550	+				-0.8
3,580,550	+				+0.6
3,580,588	+		EFB2_03425	0.13	+4.4
3,580,588	+		EFB2_03425	0.13	-1.4
3,580,589	-		EFB2_03425	0.13	-2.5
3,580,626	+		EFB2_03425	0.18	+1.6
3,580,626	+		EFB2_03425	0.18	+0.1
3,580,626	+		EFB2_03425	0.18	-1.1
3,580,626	+		EFB2_03425	0.18	+0.5
3,580,626	+		EFB2_03425	0.18	-3.9
3,580,626	+		EFB2_03425	0.18	-0.5
3,580,626	+		EFB2_03425	0.18	-0.4
3,580,626	+		EFB2_03425	0.18	-1.1
3,580,626	+		EFB2_03425	0.18	-3.2
3,580,626	+		EFB2_03425	0.18	+1.2
3,580,626	+		EFB2_03425	0.18	+3.0
3,580,626	+		EFB2_03425	0.18	+0.3
3,580,626	+		EFB2_03425	0.18	-1.2
3,580,626	+		EFB2_03425	0.18	-2.4
3,580,627	-		EFB2_03425	0.18	-0.4
3,580,627	-		EFB2_03425	0.18	+0.3
3,580,627	-		EFB2_03425	0.18	-0.1
3,580,627	-		EFB2_03425	0.18	-0.3
3,580,627	-		EFB2_03425	0.18	+0.8
3,580,627	-		EFB2_03425	0.18	-1.4
3,580,627	-		EFB2_03425	0.18	+1.1
3,580,627	-		EFB2_03425	0.18	+0.8
3,580,627	-		EFB2_03425	0.18	+0.8
3,580,627	-		EFB2_03425	0.18	-1.3
3,580,627	-		EFB2_03425	0.18	+1.6
3,580,627	-		EFB2_03425	0.18	-2.7
3,580,627	-		EFB2_03425	0.18	+0.2
3,580,627	-		EFB2_03425	0.18	-0.0
3,580,628	+		EFB2_03425	0.18	+0.2
3,580,628	+		EFB2_03425	0.18	-2.4
3,580,628	+		EFB2_03425	0.18	+0.1
3,580,628	+		EFB2_03425	0.18	-0.7
3,580,629	-		EFB2_03425	0.18	-0.3
3,580,629	-		EFB2_03425	0.18	+1.6
3,580,629	-		EFB2_03425	0.18	-2.0
3,580,629	-		EFB2_03425	0.18	-2.2
3,580,649	+		EFB2_03425	0.21	-0.4
3,580,649	+		EFB2_03425	0.21	+0.1
3,580,649	+		EFB2_03425	0.21	+1.7
3,580,649	+		EFB2_03425	0.21	+1.4
3,580,650	-		EFB2_03425	0.21	-1.5
3,580,650	-		EFB2_03425	0.21	+1.1
3,580,650	-		EFB2_03425	0.21	+2.1
3,580,670	+		EFB2_03425	0.23	+1.0
3,580,670	+		EFB2_03425	0.23	-0.7
3,580,701	+		EFB2_03425	0.27	-3.0
3,580,701	+		EFB2_03425	0.27	+0.5
3,580,701	+		EFB2_03425	0.27	-1.8
3,580,701	+		EFB2_03425	0.27	-0.5
3,580,701	+		EFB2_03425	0.27	+0.8
3,580,701	+		EFB2_03425	0.27	-1.0
3,580,702	-		EFB2_03425	0.27	-1.7
3,580,702	-		EFB2_03425	0.27	+0.7
3,580,702	-		EFB2_03425	0.27	-0.9
3,580,734	+		EFB2_03425	0.31	+0.1
3,580,734	+		EFB2_03425	0.31	-1.7
3,580,734	+		EFB2_03425	0.31	-2.2
3,580,734	+		EFB2_03425	0.31	-3.7
3,580,735	-		EFB2_03425	0.32	+0.4
3,580,735	-		EFB2_03425	0.32	-0.2
3,580,735	-		EFB2_03425	0.32	-0.1
3,580,735	-		EFB2_03425	0.32	-2.3
3,580,737	+		EFB2_03425	0.32	+0.8
3,580,737	+		EFB2_03425	0.32	-0.2
3,580,738	-		EFB2_03425	0.32	-0.1
3,580,746	-		EFB2_03425	0.33	-0.8
3,580,842	+		EFB2_03425	0.45	-0.1
3,580,863	+		EFB2_03425	0.48	-0.8
3,580,863	+		EFB2_03425	0.48	+0.9
3,580,883	+		EFB2_03425	0.50	-0.6
3,580,883	+		EFB2_03425	0.50	+0.7
3,580,894	+		EFB2_03425	0.51	+0.7
3,580,894	+		EFB2_03425	0.51	-0.2
3,580,894	+		EFB2_03425	0.51	+0.0
3,580,894	+		EFB2_03425	0.51	+1.2
3,580,894	+		EFB2_03425	0.51	-0.8
3,580,894	+		EFB2_03425	0.51	-1.5
3,580,898	+		EFB2_03425	0.52	-1.0
3,580,898	+		EFB2_03425	0.52	+1.2
3,580,898	+		EFB2_03425	0.52	+0.5
3,580,910	+		EFB2_03425	0.53	-2.0
3,580,910	+		EFB2_03425	0.53	-0.7
3,580,911	-		EFB2_03425	0.54	+1.3
3,580,919	+		EFB2_03425	0.55	+0.7
3,580,919	+		EFB2_03425	0.55	-1.4
3,580,949	+		EFB2_03425	0.58	+0.9
3,580,949	+		EFB2_03425	0.58	-2.2
3,580,949	+		EFB2_03425	0.58	-1.9
3,580,950	-		EFB2_03425	0.58	+1.2
3,580,955	+		EFB2_03425	0.59	-0.3
3,580,956	-		EFB2_03425	0.59	-2.1
3,581,015	+		EFB2_03425	0.67	+1.1
3,581,015	+		EFB2_03425	0.67	-2.6
3,581,031	+		EFB2_03425	0.69	+0.1
3,581,031	+		EFB2_03425	0.69	-0.1
3,581,031	+		EFB2_03425	0.69	-0.9
3,581,031	+		EFB2_03425	0.69	+1.2
3,581,032	-		EFB2_03425	0.69	+1.0
3,581,033	+		EFB2_03425	0.69	-0.1
3,581,054	+		EFB2_03425	0.71	+0.6
3,581,054	+		EFB2_03425	0.71	-0.8
3,581,055	-		EFB2_03425	0.72	+5.4
3,581,284	+				-1.9
3,581,284	+				-2.3
3,581,284	+				-0.3
3,581,284	+				-2.6
3,581,284	+				-3.3
3,581,284	+				+1.5
3,581,284	+				+1.4
3,581,284	+				-0.5
3,581,285	-				+0.1
3,581,345	+				-0.7
3,581,345	+				+2.8
3,581,345	+				-0.7
3,581,345	+				+2.1
3,581,346	-				-0.7
3,581,352	+				+3.7
3,581,506	+		EFB2_03426	0.14	-0.5
3,581,520	+		EFB2_03426	0.15	-1.1
3,581,538	+		EFB2_03426	0.17	-1.2
3,581,617	+		EFB2_03426	0.24	+1.5
3,581,617	+		EFB2_03426	0.24	-1.1
3,581,617	+		EFB2_03426	0.24	+2.1
3,581,617	+		EFB2_03426	0.24	+0.5
3,581,617	+		EFB2_03426	0.24	-1.2
3,581,617	+		EFB2_03426	0.24	-0.5
3,581,617	+		EFB2_03426	0.24	+0.5
3,581,617	+		EFB2_03426	0.24	-1.4
3,581,620	+		EFB2_03426	0.24	-0.9
3,581,620	+		EFB2_03426	0.24	-1.5
3,581,620	+		EFB2_03426	0.24	-1.2
3,581,620	+		EFB2_03426	0.24	-0.0
3,581,620	+		EFB2_03426	0.24	-1.7
3,581,620	+		EFB2_03426	0.24	+1.1
3,581,620	+		EFB2_03426	0.24	-2.2
3,581,620	+		EFB2_03426	0.24	+3.5
3,581,620	+		EFB2_03426	0.24	-1.2
3,581,624	+		EFB2_03426	0.25	+2.1
3,581,624	+		EFB2_03426	0.25	-1.9
3,581,624	+		EFB2_03426	0.25	-0.7
3,581,624	+		EFB2_03426	0.25	-0.9
3,581,638	+		EFB2_03426	0.26	-1.5
3,581,638	+		EFB2_03426	0.26	-1.2
3,581,638	+		EFB2_03426	0.26	+2.6
3,581,718	+		EFB2_03426	0.33	+0.0
3,581,718	+		EFB2_03426	0.33	-0.2
3,581,718	+		EFB2_03426	0.33	+0.2
3,581,770	+		EFB2_03426	0.37	-1.1
3,581,770	+		EFB2_03426	0.37	+0.1
3,581,788	+		EFB2_03426	0.39	-1.2
3,581,839	+		EFB2_03426	0.43	-0.7
3,581,839	+		EFB2_03426	0.43	+0.1
3,581,993	+		EFB2_03426	0.57	+2.4
3,581,993	+		EFB2_03426	0.57	+0.1
3,581,993	+		EFB2_03426	0.57	-0.5
3,581,993	+		EFB2_03426	0.57	-1.7
3,581,993	+		EFB2_03426	0.57	-0.3
3,581,994	-		EFB2_03426	0.57	-0.5
3,581,994	-		EFB2_03426	0.57	+0.8
3,582,008	+		EFB2_03426	0.58	+0.5
3,582,008	+		EFB2_03426	0.58	+1.7
3,582,008	+		EFB2_03426	0.58	+2.1
3,582,008	+		EFB2_03426	0.58	-1.1
3,582,008	+		EFB2_03426	0.58	+1.2
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