Strain Fitness in Escherichia fergusonii Becca around EFB2_03269

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,415,553	+				+0.5
3,415,553	+				+2.9
3,415,553	+				+0.9
3,415,553	+				-2.6
3,415,553	+				+2.1
3,415,553	+				+1.4
3,415,554	-				+0.5
3,415,554	-				-0.1
3,415,554	-				+3.1
3,415,554	-				+1.2
3,415,554	-				+0.1
3,415,563	+				+0.9
3,415,563	+				+1.1
3,415,563	+				+2.1
3,415,563	+				-2.5
3,415,564	-				+0.1
3,415,564	-				-0.1
3,415,564	-				+1.3
3,415,595	+				-2.7
3,415,596	-				-0.1
3,415,596	-				-1.2
3,415,596	-				+1.9
3,415,600	+				-0.2
3,415,600	+				-0.7
3,415,600	+				+0.9
3,415,600	+				-0.4
3,415,600	+				-0.4
3,415,600	+				-0.3
3,415,600	+				+0.6
3,415,600	+				+2.2
3,415,600	+				+0.8
3,415,600	+				+0.7
3,415,601	-				+0.7
3,415,601	-				+1.3
3,415,601	-				+0.7
3,415,601	-				-0.6
3,415,601	-				-0.4
3,415,601	-				-0.2
3,415,601	-				+0.6
3,415,601	-				-2.1
3,415,601	-				-0.8
3,415,601	-				-1.4
3,415,601	-				-1.3
3,415,601	-				+3.6
3,415,601	-				+1.5
3,415,601	-				-1.2
3,415,602	+				+1.2
3,415,603	-				-1.9
3,415,603	-				+0.9
3,415,603	-				-2.7
3,415,611	-				-2.1
3,415,611	-				-0.5
3,415,615	+				+0.2
3,415,615	+				-0.5
3,415,615	+				+0.3
3,415,616	-				+1.7
3,415,616	-				-1.5
3,415,628	+				+2.0
3,415,629	-				+0.4
3,415,629	-				+0.8
3,415,629	-				-0.1
3,415,631	+				-1.1
3,415,632	-				+0.3
3,415,648	+				+0.4
3,415,648	+				+0.6
3,415,659	+				-0.8
3,415,659	+				-2.1
3,415,659	+				+0.3
3,415,684	-				-1.2
3,415,690	+				+0.3
3,415,740	+				+0.9
3,415,740	+				-2.9
3,415,741	-				+0.5
3,415,747	+				+1.0
3,415,753	+				-1.9
3,415,753	+				-0.3
3,415,753	+				-0.1
3,415,753	+				-2.4
3,415,753	+				-2.5
3,415,754	-				-0.2
3,415,754	-				+0.6
3,415,754	-				+0.6
3,415,754	-				+0.4
3,415,809	+				+0.5
3,415,809	+				-1.8
3,415,809	+				+1.0
3,415,809	+				+1.2
3,415,809	+				+0.6
3,415,810	-				-2.8
3,415,810	-				-0.3
3,415,810	-				-1.4
3,415,810	-				+1.6
3,415,810	-				+1.4
3,415,810	-				-2.4
3,415,810	-				-2.9
3,415,810	-				+0.8
3,415,810	-				+0.4
3,415,810	-				+1.7
3,415,810	-				+0.1
3,415,810	-				+0.1
3,415,810	-				-1.1
3,415,815	+				-2.5
3,415,815	+				+1.7
3,415,815	+				-0.1
3,415,816	-				-0.3
3,415,816	-				+0.4
3,415,816	-				-0.1
3,415,816	-				+0.5
3,415,833	+				-0.4
3,415,833	+				-0.7
3,415,856	+				-3.1
3,415,883	+		EFB2_03268	0.12	-0.0
3,415,883	+		EFB2_03268	0.12	-1.9
3,415,883	+		EFB2_03268	0.12	-0.0
3,415,883	+		EFB2_03268	0.12	+0.8
3,415,883	+		EFB2_03268	0.12	-1.4
3,415,883	+		EFB2_03268	0.12	-0.5
3,415,883	+		EFB2_03268	0.12	-1.1
3,415,883	+		EFB2_03268	0.12	-1.2
3,415,883	+		EFB2_03268	0.12	+0.3
3,415,883	+		EFB2_03268	0.12	-3.2
3,415,883	+		EFB2_03268	0.12	-2.4
3,415,883	+		EFB2_03268	0.12	+0.3
3,415,883	+		EFB2_03268	0.12	+1.3
3,415,883	+		EFB2_03268	0.12	-2.4
3,415,883	+		EFB2_03268	0.12	-0.1
3,415,883	+		EFB2_03268	0.12	+0.4
3,415,883	+		EFB2_03268	0.12	+0.7
3,415,883	+		EFB2_03268	0.12	-1.1
3,415,884	-		EFB2_03268	0.12	+0.9
3,415,884	-		EFB2_03268	0.12	+0.7
3,415,884	-		EFB2_03268	0.12	+1.5
3,415,884	-		EFB2_03268	0.12	-0.4
3,415,884	-		EFB2_03268	0.12	-2.7
3,415,884	-		EFB2_03268	0.12	-0.5
3,415,884	-		EFB2_03268	0.12	+0.4
3,415,884	-		EFB2_03268	0.12	+0.0
3,415,884	-		EFB2_03268	0.12	-3.4
3,415,884	-		EFB2_03268	0.12	+1.8
3,415,884	-		EFB2_03268	0.12	-1.7
3,415,884	-		EFB2_03268	0.12	-1.1
3,415,884	-		EFB2_03268	0.12	+2.2
3,415,884	-		EFB2_03268	0.12	-1.0
3,415,884	-		EFB2_03268	0.12	+2.0
3,415,884	-		EFB2_03268	0.12	-0.0
3,415,888	+		EFB2_03268	0.12	-0.2
3,415,888	+		EFB2_03268	0.12	-2.0
3,415,888	+		EFB2_03268	0.12	-1.6
3,415,888	+		EFB2_03268	0.12	+0.6
3,415,889	-		EFB2_03268	0.13	-0.5
3,415,889	-		EFB2_03268	0.13	-0.4
3,416,029	+		EFB2_03268	0.35	+4.7
3,416,131	-		EFB2_03268	0.51	+1.6
3,416,159	+		EFB2_03268	0.56	+1.6
3,416,159	+		EFB2_03268	0.56	+0.6
3,416,159	+		EFB2_03268	0.56	+0.5
3,416,160	-		EFB2_03268	0.56	-2.0
3,416,261	+		EFB2_03268	0.72	-4.0
3,416,262	-		EFB2_03268	0.72	+0.7
3,416,320	+		EFB2_03268	0.81	+0.4
3,416,320	+		EFB2_03268	0.81	+2.3
3,416,320	+		EFB2_03268	0.81	-0.1
3,416,320	+		EFB2_03268	0.81	-0.4
3,416,321	-		EFB2_03268	0.81	-0.9
3,416,321	-		EFB2_03268	0.81	+1.1
3,416,331	+		EFB2_03268	0.83	-2.4
3,416,431	-				-1.7
3,416,434	+				+1.7
3,416,434	+				+1.0
3,416,434	+				+1.2
3,416,434	+				-0.7
3,416,434	+				-1.6
3,416,434	+				-0.8
3,416,434	+				-0.4
3,416,434	+				-0.6
3,416,434	+				-2.0
3,416,434	+				+1.3
3,416,435	-				-0.4
3,416,435	-				+1.3
3,416,435	-				+0.6
3,416,435	-				+0.7
3,416,435	-				-0.2
3,416,435	-				+0.6
3,416,435	-				+0.8
3,416,447	+				-0.8
3,416,448	-				-2.8
3,416,453	+				+1.7
3,416,453	+				-3.3
3,416,453	+				+0.5
3,416,453	+				+1.8
3,416,453	+				-0.9
3,416,454	-				-0.1
3,416,454	-				+0.5
3,416,454	-				+1.6
3,416,454	-				-0.0
3,416,454	-				+1.1
3,416,457	+				+0.5
3,416,457	+				+0.0
3,416,457	+				-0.7
3,416,457	+				-0.2
3,416,458	-				-1.4
3,416,458	-				+0.4
3,416,458	-				-3.1
3,416,458	-				-0.5
3,416,488	+				+1.7
3,416,488	+				+1.9
3,416,489	-				+0.1
3,416,489	-				+1.1
3,416,489	-				-1.8
3,416,489	-				-1.4
3,416,489	-				-1.5
3,416,490	+				-3.4
3,416,490	+				-1.0
3,416,490	+				+0.6
3,416,490	+				-1.9
3,416,490	+				+2.1
3,416,490	+				-1.4
3,416,491	-				-0.3
3,416,491	-				+0.2
3,416,491	-				-1.5
3,416,491	-				+0.0
3,416,491	-				+1.4
3,416,491	-				-0.2
3,416,491	-				+0.7
3,416,494	+				-0.7
3,416,495	-				+0.7
3,416,495	-				-0.2
3,416,495	-				-0.2
3,416,545	-		EFB2_03269	0.10	-0.5
3,416,603	+		EFB2_03269	0.15	-0.7
3,416,603	+		EFB2_03269	0.15	-0.6
3,416,603	+		EFB2_03269	0.15	+1.2
3,416,603	+		EFB2_03269	0.15	-0.9
3,416,604	-		EFB2_03269	0.15	+2.3
3,416,604	-		EFB2_03269	0.15	-1.2
3,416,604	-		EFB2_03269	0.15	-0.3
3,416,604	-		EFB2_03269	0.15	+1.1
3,416,604	-		EFB2_03269	0.15	-0.4
3,416,604	-		EFB2_03269	0.15	-1.7
3,416,625	+		EFB2_03269	0.17	+0.4
3,416,625	+		EFB2_03269	0.17	-0.9
3,416,626	-		EFB2_03269	0.17	+1.2
3,416,626	-		EFB2_03269	0.17	+1.2
3,416,652	-		EFB2_03269	0.20	+1.1
3,416,652	-		EFB2_03269	0.20	+1.0
3,416,660	+		EFB2_03269	0.20	-0.9
3,416,660	+		EFB2_03269	0.20	-0.8
3,416,660	+		EFB2_03269	0.20	-0.3
3,416,660	+		EFB2_03269	0.20	+1.6
3,416,661	-		EFB2_03269	0.20	-2.5
3,416,661	-		EFB2_03269	0.20	-0.4
3,416,661	-		EFB2_03269	0.20	+1.0
3,416,661	-		EFB2_03269	0.20	+0.5
3,416,662	+		EFB2_03269	0.21	-1.2
3,416,662	+		EFB2_03269	0.21	-2.8
3,416,662	+		EFB2_03269	0.21	-1.8
3,416,662	+		EFB2_03269	0.21	-0.0
3,416,662	+		EFB2_03269	0.21	+0.7
3,416,662	+		EFB2_03269	0.21	+1.4
3,416,663	-		EFB2_03269	0.21	-0.3
3,416,663	-		EFB2_03269	0.21	+0.8
3,416,663	-		EFB2_03269	0.21	+1.4
3,416,663	-		EFB2_03269	0.21	+0.6
3,416,663	-		EFB2_03269	0.21	-2.1
3,416,663	-		EFB2_03269	0.21	+1.1
3,416,663	-		EFB2_03269	0.21	-2.0
3,416,663	-		EFB2_03269	0.21	-1.7
3,416,663	-		EFB2_03269	0.21	-0.9
3,416,663	-		EFB2_03269	0.21	-0.0
3,416,663	-		EFB2_03269	0.21	+1.1
3,416,663	-		EFB2_03269	0.21	-1.1
3,416,663	-		EFB2_03269	0.21	+0.1
3,416,663	-		EFB2_03269	0.21	+1.5
3,416,751	+		EFB2_03269	0.28	+0.0
3,416,752	-		EFB2_03269	0.29	-3.3
3,416,756	+		EFB2_03269	0.29	+0.9
3,416,757	-		EFB2_03269	0.29	+2.1
3,416,757	-		EFB2_03269	0.29	-1.0
3,416,757	-		EFB2_03269	0.29	+0.2
3,416,757	-		EFB2_03269	0.29	+0.1
3,416,757	-		EFB2_03269	0.29	-2.2
3,416,757	-		EFB2_03269	0.29	-0.3
3,416,767	+		EFB2_03269	0.30	+1.4
3,416,767	+		EFB2_03269	0.30	+0.5
3,416,767	+		EFB2_03269	0.30	+1.6
3,416,768	-		EFB2_03269	0.30	+1.4
3,416,768	-		EFB2_03269	0.30	-0.1
3,416,768	-		EFB2_03269	0.30	+1.2
3,416,768	-		EFB2_03269	0.30	+1.9
3,416,768	-		EFB2_03269	0.30	-2.5
3,416,768	-		EFB2_03269	0.30	+0.9
3,416,768	-		EFB2_03269	0.30	-2.9
3,416,768	-		EFB2_03269	0.30	+0.3
3,416,768	-		EFB2_03269	0.30	-1.7
3,416,768	-		EFB2_03269	0.30	-1.9
3,416,768	-		EFB2_03269	0.30	+2.3
3,416,800	+		EFB2_03269	0.33	-0.2
3,416,825	+		EFB2_03269	0.35	-0.3
3,416,825	+		EFB2_03269	0.35	+2.9
3,416,826	-		EFB2_03269	0.35	+1.7
3,416,826	-		EFB2_03269	0.35	+0.0
3,416,826	-		EFB2_03269	0.35	-0.7
3,416,826	-		EFB2_03269	0.35	-1.2
3,416,826	-		EFB2_03269	0.35	+2.3
3,416,826	-		EFB2_03269	0.35	+0.3
3,416,865	+		EFB2_03269	0.39	+2.4
3,416,866	-		EFB2_03269	0.39	-2.9
3,416,873	+		EFB2_03269	0.39	-1.1
3,416,874	-		EFB2_03269	0.40	+1.7
3,416,874	-		EFB2_03269	0.40	+1.1
3,416,874	-		EFB2_03269	0.40	-0.2
3,416,874	-		EFB2_03269	0.40	+1.7
3,416,874	-		EFB2_03269	0.40	+0.7
3,416,906	+		EFB2_03269	0.42	-0.6
3,416,906	+		EFB2_03269	0.42	+2.4
3,416,907	-		EFB2_03269	0.42	+0.3
3,416,907	-		EFB2_03269	0.42	+1.0
3,416,907	-		EFB2_03269	0.42	-0.7
3,416,917	+		EFB2_03269	0.43	+0.5
3,416,917	+		EFB2_03269	0.43	+0.8
3,416,917	+		EFB2_03269	0.43	+0.7
3,416,918	-		EFB2_03269	0.43	+1.6
3,416,918	-		EFB2_03269	0.43	+0.2
3,416,954	+		EFB2_03269	0.47	-1.1
3,416,954	+		EFB2_03269	0.47	+1.5
3,416,954	+		EFB2_03269	0.47	+1.4
3,416,955	-		EFB2_03269	0.47	+0.4
3,416,955	-		EFB2_03269	0.47	-1.0
3,416,955	-		EFB2_03269	0.47	-0.7
3,416,955	-		EFB2_03269	0.47	+0.4
3,416,963	+		EFB2_03269	0.47	-1.5
3,416,963	+		EFB2_03269	0.47	+2.1
3,416,964	-		EFB2_03269	0.48	-2.7
3,416,964	-		EFB2_03269	0.48	-4.0
3,416,964	-		EFB2_03269	0.48	-0.4
3,417,012	+		EFB2_03269	0.52	-0.0
3,417,013	-		EFB2_03269	0.52	-0.7
3,417,013	-		EFB2_03269	0.52	+0.8
3,417,013	-		EFB2_03269	0.52	-1.1
3,417,013	-		EFB2_03269	0.52	-0.7
3,417,013	-		EFB2_03269	0.52	-1.7
3,417,065	+		EFB2_03269	0.57	+0.5
3,417,073	+		EFB2_03269	0.57	-2.7
3,417,074	-		EFB2_03269	0.57	-0.7
3,417,074	-		EFB2_03269	0.57	+1.6
3,417,080	+		EFB2_03269	0.58	-1.5
3,417,090	+		EFB2_03269	0.59	+0.4
3,417,090	+		EFB2_03269	0.59	-1.2
3,417,090	+		EFB2_03269	0.59	-2.2
3,417,090	+		EFB2_03269	0.59	+0.8
3,417,090	+		EFB2_03269	0.59	+1.9
3,417,090	+		EFB2_03269	0.59	+1.7
3,417,090	+		EFB2_03269	0.59	+0.9
3,417,091	-		EFB2_03269	0.59	+1.7
3,417,091	-		EFB2_03269	0.59	-0.3
3,417,091	-		EFB2_03269	0.59	+0.3
3,417,091	-		EFB2_03269	0.59	-0.0
3,417,183	+		EFB2_03269	0.67	+0.3
3,417,183	+		EFB2_03269	0.67	-3.1
3,417,183	+		EFB2_03269	0.67	-1.3
3,417,183	+		EFB2_03269	0.67	-0.1
3,417,183	+		EFB2_03269	0.67	-1.2
3,417,183	+		EFB2_03269	0.67	+1.1
3,417,184	-		EFB2_03269	0.67	+1.5
3,417,184	-		EFB2_03269	0.67	-0.7
3,417,184	-		EFB2_03269	0.67	+0.4
3,417,184	-		EFB2_03269	0.67	-1.7
3,417,184	-		EFB2_03269	0.67	-0.9
3,417,194	-		EFB2_03269	0.68	-2.2
3,417,238	+		EFB2_03269	0.72	-2.1
3,417,244	-		EFB2_03269	0.73	-0.9
3,417,279	+		EFB2_03269	0.76	-0.0
3,417,279	+		EFB2_03269	0.76	-2.4
3,417,280	-		EFB2_03269	0.76	-0.3
3,417,280	-		EFB2_03269	0.76	+0.5
3,417,348	+		EFB2_03269	0.82	-0.7
3,417,348	+		EFB2_03269	0.82	+0.2
3,417,348	+		EFB2_03269	0.82	-1.4
3,417,349	-		EFB2_03269	0.82	+0.8
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