Strain Fitness in Escherichia fergusonii Becca around EFB2_03117

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,254,497	+		EFB2_03116	0.41	+1.1
3,254,497	+		EFB2_03116	0.41	-1.4
3,254,497	+		EFB2_03116	0.41	-1.6
3,254,537	+		EFB2_03116	0.44	+0.9
3,254,537	+		EFB2_03116	0.44	+0.1
3,254,537	+		EFB2_03116	0.44	+0.5
3,254,537	+		EFB2_03116	0.44	-1.3
3,254,537	+		EFB2_03116	0.44	+1.1
3,254,537	+		EFB2_03116	0.44	-1.2
3,254,537	+		EFB2_03116	0.44	-0.2
3,254,537	+		EFB2_03116	0.44	+0.1
3,254,537	+		EFB2_03116	0.44	-1.2
3,254,537	+		EFB2_03116	0.44	-0.3
3,254,538	-		EFB2_03116	0.44	-0.5
3,254,538	-		EFB2_03116	0.44	-0.0
3,254,538	-		EFB2_03116	0.44	+1.4
3,254,538	-		EFB2_03116	0.44	+0.8
3,254,538	-		EFB2_03116	0.44	-1.1
3,254,545	+		EFB2_03116	0.44	+0.2
3,254,545	+		EFB2_03116	0.44	-1.4
3,254,546	-		EFB2_03116	0.44	-1.5
3,254,546	-		EFB2_03116	0.44	-0.5
3,254,575	+		EFB2_03116	0.46	-2.6
3,254,576	-		EFB2_03116	0.46	-1.8
3,254,576	-		EFB2_03116	0.46	+0.1
3,254,579	+		EFB2_03116	0.46	+1.5
3,254,579	+		EFB2_03116	0.46	+2.1
3,254,579	+		EFB2_03116	0.46	+0.7
3,254,580	-		EFB2_03116	0.46	-1.8
3,254,580	-		EFB2_03116	0.46	-0.1
3,254,598	+		EFB2_03116	0.47	+0.5
3,254,598	+		EFB2_03116	0.47	+0.4
3,254,598	+		EFB2_03116	0.47	-0.8
3,254,598	+		EFB2_03116	0.47	-0.5
3,254,598	+		EFB2_03116	0.47	+0.7
3,254,598	+		EFB2_03116	0.47	-0.0
3,254,598	+		EFB2_03116	0.47	+1.5
3,254,599	-		EFB2_03116	0.47	+2.3
3,254,599	-		EFB2_03116	0.47	+0.3
3,254,627	+		EFB2_03116	0.49	-1.6
3,254,704	+		EFB2_03116	0.53	-2.8
3,254,704	+		EFB2_03116	0.53	-2.3
3,254,704	+		EFB2_03116	0.53	+0.9
3,254,704	+		EFB2_03116	0.53	-3.5
3,254,710	+		EFB2_03116	0.54	+1.1
3,254,710	+		EFB2_03116	0.54	+3.1
3,254,711	-		EFB2_03116	0.54	-1.5
3,254,711	-		EFB2_03116	0.54	-1.1
3,254,716	+		EFB2_03116	0.54	+1.3
3,254,716	+		EFB2_03116	0.54	-1.2
3,254,716	+		EFB2_03116	0.54	+0.8
3,254,791	+		EFB2_03116	0.58	-1.7
3,254,792	-		EFB2_03116	0.58	-0.6
3,254,792	-		EFB2_03116	0.58	-2.2
3,254,822	+		EFB2_03116	0.60	-3.6
3,254,885	+		EFB2_03116	0.63	-2.7
3,254,885	+		EFB2_03116	0.63	+1.3
3,254,885	+		EFB2_03116	0.63	-0.5
3,254,885	+		EFB2_03116	0.63	+1.1
3,254,885	+		EFB2_03116	0.63	-1.2
3,254,885	+		EFB2_03116	0.63	-2.4
3,254,886	-		EFB2_03116	0.64	+0.3
3,254,886	-		EFB2_03116	0.64	-0.9
3,254,886	-		EFB2_03116	0.64	-0.7
3,254,886	-		EFB2_03116	0.64	-0.7
3,254,886	-		EFB2_03116	0.64	+0.2
3,254,886	-		EFB2_03116	0.64	+0.6
3,254,900	+		EFB2_03116	0.64	-2.8
3,254,901	-		EFB2_03116	0.64	+1.1
3,254,901	-		EFB2_03116	0.64	-1.2
3,255,004	+		EFB2_03116	0.70	-0.4
3,255,004	+		EFB2_03116	0.70	+0.9
3,255,057	+		EFB2_03116	0.73	-2.5
3,255,057	+		EFB2_03116	0.73	-1.9
3,255,057	+		EFB2_03116	0.73	+1.5
3,255,057	+		EFB2_03116	0.73	-2.6
3,255,058	-		EFB2_03116	0.73	-3.0
3,255,058	-		EFB2_03116	0.73	+1.8
3,255,058	-		EFB2_03116	0.73	+0.5
3,255,058	-		EFB2_03116	0.73	-3.0
3,255,058	-		EFB2_03116	0.73	-1.3
3,255,058	-		EFB2_03116	0.73	-0.2
3,255,077	+		EFB2_03116	0.74	+0.1
3,255,078	-		EFB2_03116	0.74	+1.7
3,255,143	+		EFB2_03116	0.78	+3.1
3,255,144	-		EFB2_03116	0.78	-0.3
3,255,144	-		EFB2_03116	0.78	-0.9
3,255,144	-		EFB2_03116	0.78	+1.1
3,255,199	+		EFB2_03116	0.81	+3.8
3,255,199	+		EFB2_03116	0.81	+0.6
3,255,199	+		EFB2_03116	0.81	-0.8
3,255,200	-		EFB2_03116	0.81	-0.9
3,255,200	-		EFB2_03116	0.81	+1.1
3,255,227	+		EFB2_03116	0.83	+1.7
3,255,227	+		EFB2_03116	0.83	-1.5
3,255,227	+		EFB2_03116	0.83	+4.3
3,255,227	+		EFB2_03116	0.83	-1.2
3,255,227	+		EFB2_03116	0.83	+1.3
3,255,228	-		EFB2_03116	0.83	+1.7
3,255,281	+		EFB2_03116	0.86	-0.2
3,255,281	+		EFB2_03116	0.86	+0.5
3,255,282	-		EFB2_03116	0.86	+0.7
3,255,282	-		EFB2_03116	0.86	-1.9
3,255,282	-		EFB2_03116	0.86	+0.6
3,255,282	-		EFB2_03116	0.86	+1.5
3,255,295	+		EFB2_03116	0.87	+0.5
3,255,295	+		EFB2_03116	0.87	+1.0
3,255,295	+		EFB2_03116	0.87	+0.7
3,255,295	+		EFB2_03116	0.87	+1.7
3,255,295	+		EFB2_03116	0.87	-2.7
3,255,295	+		EFB2_03116	0.87	-0.2
3,255,295	+		EFB2_03116	0.87	-0.7
3,255,295	+		EFB2_03116	0.87	-0.6
3,255,296	-		EFB2_03116	0.87	+3.5
3,255,296	-		EFB2_03116	0.87	+1.3
3,255,296	-		EFB2_03116	0.87	-1.1
3,255,325	+		EFB2_03116	0.88	+1.6
3,255,325	+		EFB2_03116	0.88	+0.9
3,255,355	+				-3.5
3,255,382	+				-1.4
3,255,385	+				+1.0
3,255,385	+				+0.6
3,255,385	+				+1.8
3,255,385	+				-0.1
3,255,385	+				-0.8
3,255,385	+				-0.3
3,255,388	+				+0.1
3,255,388	+				+1.4
3,255,446	+				+0.4
3,255,446	+				+3.1
3,255,446	+				-0.2
3,255,447	-				-1.6
3,255,447	-				-1.3
3,255,447	-				-2.1
3,255,485	+				-0.5
3,255,496	+				-0.9
3,255,496	+				-1.1
3,255,496	+				+0.7
3,255,496	+				-0.2
3,255,496	+				+1.1
3,255,496	+				+1.0
3,255,496	+				+0.1
3,255,496	+				+1.5
3,255,496	+				-0.3
3,255,496	+				+0.1
3,255,497	-				+0.7
3,255,497	-				-2.0
3,255,497	-				-0.2
3,255,515	+				+0.6
3,256,131	+				-1.2
3,256,131	+				+0.1
3,256,131	+				+1.0
3,256,131	+				-0.6
3,256,131	+				-0.5
3,256,131	+				+0.7
3,256,131	+				+0.6
3,256,131	+				+0.5
3,256,131	+				-1.6
3,256,131	+				-1.1
3,256,131	+				+1.4
3,256,131	+				-1.8
3,256,131	+				-1.6
3,256,131	+				-1.8
3,256,131	+				-1.2
3,256,131	+				+2.0
3,256,131	+				-1.5
3,256,131	+				-3.7
3,256,131	+				-0.3
3,256,131	+				+0.2
3,256,131	+				-3.7
3,256,132	-				+1.9
3,256,132	-				+0.5
3,256,132	-				-2.9
3,256,132	-				+0.1
3,256,132	-				+1.9
3,256,132	-				-0.7
3,256,133	+				-2.4
3,256,133	+				+1.0
3,256,133	+				+0.8
3,256,133	+				-2.2
3,256,133	+				-0.7
3,256,133	+				-0.9
3,256,133	+				+0.2
3,256,133	+				+0.1
3,256,133	+				-3.1
3,256,133	+				+1.5
3,256,133	+				+0.8
3,256,133	+				-2.0
3,256,133	+				-0.7
3,256,133	+				-0.1
3,256,133	+				+0.1
3,256,133	+				+1.0
3,256,133	+				+0.7
3,256,133	+				+1.1
3,256,133	+				+1.0
3,256,133	+				-1.2
3,256,133	+				+3.2
3,256,133	+				-1.3
3,256,133	+				-0.8
3,256,133	+				-0.7
3,256,133	+				-2.0
3,256,133	+				+0.1
3,256,133	+				+0.1
3,256,133	+				-3.2
3,256,133	+				+0.1
3,256,133	+				-2.3
3,256,133	+				-3.4
3,256,134	-				-1.3
3,256,134	-				+2.1
3,256,135	+				+0.2
3,256,135	+				+0.1
3,256,135	+				-0.7
3,256,135	+				+0.8
3,256,135	+				-1.4
3,256,135	+				+0.8
3,256,135	+				+1.2
3,256,135	+				+1.3
3,256,135	+				-0.8
3,256,135	+				-2.3
3,256,135	+				+1.5
3,256,135	+				-3.2
3,256,135	+				-1.1
3,256,135	+				+0.1
3,256,135	+				+0.7
3,256,136	-				+1.5
3,256,136	-				-1.2
3,256,136	-				+0.1
3,256,172	-				+0.4
3,256,172	-				+0.5
3,256,172	-				-0.4
3,256,193	+				-1.2
3,256,193	+				-1.6
3,256,193	+				+1.1
3,256,193	+				-0.4
3,256,193	+				+0.7
3,256,194	-				+0.5
3,256,194	-				-1.8
3,256,194	-				-0.4
3,256,194	-				-1.2
3,256,194	-				-0.9
3,256,194	-				-2.2
3,256,194	-				-0.7
3,256,194	-				-2.5
3,256,194	-				-1.2
3,256,196	+				-0.7
3,256,196	+				+0.4
3,256,196	+				+0.8
3,256,196	+				+0.7
3,256,197	-				+0.9
3,256,197	-				-1.7
3,256,367	+				+2.6
3,256,368	-				-0.5
3,256,402	+				+0.6
3,256,403	-				+1.7
3,256,403	-				-2.0
3,256,406	+				-0.9
3,256,407	-				+1.6
3,256,407	-				+1.8
3,256,407	-				+0.5
3,256,476	+				+1.6
3,256,477	-				-2.1
3,256,487	+				-0.3
3,256,488	-				-1.2
3,256,488	-				-1.5
3,256,544	+				-0.7
3,256,545	-				-0.5
3,256,573	+				+1.2
3,256,588	+				-1.6
3,256,589	-				+1.7
3,256,592	+				-0.9
3,256,609	-				+2.3
3,256,609	-				-2.9
3,256,613	+				+0.5
3,256,613	+				-0.5
3,256,614	-				+0.4
3,256,614	-				-1.0
3,256,614	-				+2.1
3,256,622	+				+1.1
3,256,623	-				+0.4
3,256,636	+				+0.2
3,256,636	+				-0.5
3,256,636	+				-0.7
3,256,636	+				+0.5
3,256,637	-				-0.1
3,256,637	-				-0.1
3,256,637	-				-3.0
3,256,676	-		EFB2_03119	0.12	-0.9
3,256,690	-		EFB2_03119	0.15	+0.6
3,256,875	-		EFB2_03119	0.48	-0.2
3,256,875	-		EFB2_03119	0.48	+0.7
3,256,875	-		EFB2_03119	0.48	+1.5
3,256,875	-		EFB2_03119	0.48	-2.6
3,256,959	+		EFB2_03119	0.62	+2.1
3,256,959	+		EFB2_03119	0.62	+0.1
3,256,959	+		EFB2_03119	0.62	-1.0
3,256,959	+		EFB2_03119	0.62	-1.1
3,256,959	+		EFB2_03119	0.62	+1.1
3,256,960	-		EFB2_03119	0.63	-0.8
3,256,960	-		EFB2_03119	0.63	+0.3
3,256,960	-		EFB2_03119	0.63	+0.8
3,256,960	-		EFB2_03119	0.63	+0.5
3,256,960	-		EFB2_03119	0.63	-0.8
3,256,960	-		EFB2_03119	0.63	-2.3
3,256,960	-		EFB2_03119	0.63	-2.7
3,256,960	-		EFB2_03119	0.63	+0.4
3,256,960	-		EFB2_03119	0.63	-1.4
3,256,960	-		EFB2_03119	0.63	+0.3
3,256,960	-		EFB2_03119	0.63	+2.0
3,256,960	-		EFB2_03119	0.63	-1.4
3,257,033	+		EFB2_03119	0.76	-1.3
3,257,034	-		EFB2_03119	0.76	-1.3
3,257,044	+		EFB2_03119	0.77	-1.5
3,257,069	-		EFB2_03119	0.82	-0.7
3,257,087	+		EFB2_03119	0.85	-1.2
3,257,087	+		EFB2_03119	0.85	+0.1
3,257,088	-		EFB2_03119	0.85	-0.2
3,257,088	-		EFB2_03119	0.85	+0.7
3,257,088	-		EFB2_03119	0.85	+0.1
3,257,088	-		EFB2_03119	0.85	-0.3
3,257,088	-		EFB2_03119	0.85	-0.8
3,257,088	-		EFB2_03119	0.85	-0.5
3,257,095	-		EFB2_03119	0.87	+0.9
3,257,098	-		EFB2_03119	0.87	+0.0
3,257,098	-		EFB2_03119	0.87	-1.1
3,257,098	-		EFB2_03119	0.87	-0.8