Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EFB2_00422 and EFB2_00423 are separated by 227 nucleotides EFB2_00423 and EFB2_00424 overlap by 4 nucleotides EFB2_00424 and EFB2_00425 are separated by 76 nucleotides
EFB2_00422: EFB2_00422 - Transcription elongation factor GreB, at 446,001 to 446,477
_00422
EFB2_00423: EFB2_00423 - Transcriptional regulatory protein OmpR, at 446,705 to 447,424
_00423
EFB2_00424: EFB2_00424 - Osmolarity sensor protein EnvZ, at 447,421 to 448,773
_00424
EFB2_00425: EFB2_00425 - Phosphoenolpyruvate carboxykinase (ATP), at 448,850 to 450,472
_00425
Position (kb) 447
448
449 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 446.423 kb on + strand, within EFB2_00422 at 446.423 kb on + strand, within EFB2_00422 at 446.423 kb on + strand, within EFB2_00422 at 446.423 kb on + strand, within EFB2_00422 at 446.423 kb on + strand, within EFB2_00422 at 446.423 kb on + strand, within EFB2_00422 at 446.423 kb on + strand, within EFB2_00422 at 446.423 kb on + strand, within EFB2_00422 at 446.423 kb on + strand, within EFB2_00422 at 446.423 kb on + strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.424 kb on - strand, within EFB2_00422 at 446.447 kb on - strand at 446.520 kb on + strand at 446.520 kb on + strand at 446.520 kb on + strand at 446.521 kb on - strand at 446.521 kb on - strand at 446.521 kb on - strand at 446.522 kb on + strand at 446.522 kb on + strand at 446.522 kb on + strand at 446.522 kb on + strand at 446.522 kb on + strand at 446.522 kb on + strand at 446.522 kb on + strand at 446.523 kb on - strand at 446.523 kb on - strand at 446.533 kb on + strand at 446.533 kb on + strand at 446.533 kb on + strand at 446.533 kb on + strand at 446.533 kb on + strand at 446.533 kb on + strand at 446.533 kb on + strand at 446.533 kb on + strand at 446.533 kb on + strand at 446.533 kb on + strand at 446.534 kb on - strand at 446.534 kb on - strand at 446.534 kb on - strand at 446.563 kb on + strand at 446.564 kb on - strand at 446.570 kb on + strand at 446.572 kb on + strand at 446.573 kb on - strand at 446.576 kb on + strand at 446.576 kb on + strand at 446.576 kb on + strand at 446.576 kb on + strand at 446.576 kb on + strand at 446.576 kb on + strand at 446.576 kb on + strand at 446.576 kb on + strand at 446.576 kb on + strand at 446.577 kb on - strand at 446.577 kb on - strand at 446.577 kb on - strand at 446.577 kb on - strand at 446.577 kb on - strand at 446.577 kb on - strand at 446.577 kb on - strand at 446.592 kb on - strand at 446.658 kb on - strand at 446.663 kb on + strand at 446.663 kb on + strand at 446.663 kb on + strand at 446.664 kb on - strand at 446.664 kb on - strand at 446.664 kb on - strand at 446.664 kb on - strand at 446.664 kb on - strand at 446.671 kb on + strand at 446.671 kb on + strand at 446.672 kb on - strand at 446.697 kb on + strand at 446.697 kb on + strand at 446.697 kb on + strand at 446.697 kb on + strand at 446.697 kb on + strand at 446.697 kb on + strand at 446.697 kb on + strand at 446.698 kb on - strand at 446.698 kb on - strand at 446.698 kb on - strand at 446.699 kb on + strand at 446.699 kb on + strand at 446.699 kb on + strand at 446.699 kb on + strand at 446.699 kb on + strand at 446.699 kb on + strand at 446.700 kb on - strand at 446.700 kb on - strand at 446.700 kb on - strand at 446.700 kb on - strand at 446.700 kb on - strand at 446.700 kb on - strand at 446.700 kb on - strand at 446.700 kb on - strand at 446.700 kb on - strand at 446.717 kb on + strand at 446.717 kb on + strand at 446.717 kb on + strand at 446.717 kb on + strand at 446.717 kb on + strand at 446.717 kb on + strand at 446.717 kb on + strand at 446.717 kb on + strand at 446.717 kb on + strand at 446.718 kb on - strand at 446.718 kb on - strand at 446.718 kb on - strand at 446.718 kb on - strand at 446.771 kb on + strand at 446.771 kb on + strand at 446.771 kb on + strand at 446.771 kb on + strand at 446.771 kb on + strand at 446.772 kb on - strand at 446.772 kb on - strand at 446.772 kb on - strand at 446.772 kb on - strand at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.857 kb on + strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.858 kb on - strand, within EFB2_00423 at 446.877 kb on + strand, within EFB2_00423 at 446.877 kb on + strand, within EFB2_00423 at 446.877 kb on + strand, within EFB2_00423 at 446.877 kb on + strand, within EFB2_00423 at 446.877 kb on + strand, within EFB2_00423 at 446.877 kb on + strand, within EFB2_00423 at 446.877 kb on + strand, within EFB2_00423 at 446.877 kb on + strand, within EFB2_00423 at 446.878 kb on - strand, within EFB2_00423 at 446.878 kb on - strand, within EFB2_00423 at 446.878 kb on - strand, within EFB2_00423 at 446.878 kb on - strand, within EFB2_00423 at 446.878 kb on - strand, within EFB2_00423 at 446.918 kb on - strand, within EFB2_00423 at 446.944 kb on + strand, within EFB2_00423 at 446.944 kb on + strand, within EFB2_00423 at 446.944 kb on + strand, within EFB2_00423 at 446.945 kb on - strand, within EFB2_00423 at 446.945 kb on - strand, within EFB2_00423 at 446.978 kb on - strand, within EFB2_00423 at 447.008 kb on + strand, within EFB2_00423 at 447.008 kb on + strand, within EFB2_00423 at 447.008 kb on + strand, within EFB2_00423 at 447.008 kb on + strand, within EFB2_00423 at 447.008 kb on + strand, within EFB2_00423 at 447.009 kb on - strand, within EFB2_00423 at 447.009 kb on - strand, within EFB2_00423 at 447.009 kb on - strand, within EFB2_00423 at 447.009 kb on - strand, within EFB2_00423 at 447.026 kb on - strand, within EFB2_00423 at 447.114 kb on + strand, within EFB2_00423 at 447.114 kb on + strand, within EFB2_00423 at 447.139 kb on + strand, within EFB2_00423 at 447.140 kb on - strand, within EFB2_00423 at 447.208 kb on - strand, within EFB2_00423 at 447.208 kb on - strand, within EFB2_00423 at 447.208 kb on - strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.211 kb on + strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.212 kb on - strand, within EFB2_00423 at 447.253 kb on + strand, within EFB2_00423 at 447.284 kb on + strand, within EFB2_00423 at 447.365 kb on + strand at 447.393 kb on - strand at 447.393 kb on - strand at 447.403 kb on - strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.462 kb on + strand at 447.462 kb on + strand at 447.463 kb on - strand at 447.467 kb on + strand at 447.467 kb on + strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.512 kb on - strand at 447.512 kb on - strand at 447.512 kb on - strand at 447.512 kb on - strand at 447.558 kb on + strand, within EFB2_00424 at 447.559 kb on - strand, within EFB2_00424 at 447.559 kb on - strand, within EFB2_00424 at 447.559 kb on - strand, within EFB2_00424 at 447.559 kb on - strand, within EFB2_00424 at 447.559 kb on - strand, within EFB2_00424 at 447.561 kb on + strand, within EFB2_00424 at 447.561 kb on + strand, within EFB2_00424 at 447.561 kb on + strand, within EFB2_00424 at 447.562 kb on - strand, within EFB2_00424 at 447.562 kb on - strand, within EFB2_00424 at 447.562 kb on - strand, within EFB2_00424 at 447.562 kb on - strand, within EFB2_00424 at 447.585 kb on + strand, within EFB2_00424 at 447.585 kb on + strand, within EFB2_00424 at 447.585 kb on + strand, within EFB2_00424 at 447.585 kb on + strand, within EFB2_00424 at 447.585 kb on + strand, within EFB2_00424 at 447.585 kb on + strand, within EFB2_00424 at 447.585 kb on + strand, within EFB2_00424 at 447.585 kb on + strand, within EFB2_00424 at 447.585 kb on + strand, within EFB2_00424 at 447.585 kb on + strand, within EFB2_00424 at 447.585 kb on + strand, within EFB2_00424 at 447.585 kb on + strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.586 kb on - strand, within EFB2_00424 at 447.662 kb on - strand, within EFB2_00424 at 447.662 kb on - strand, within EFB2_00424 at 447.662 kb on - strand, within EFB2_00424 at 447.662 kb on - strand, within EFB2_00424 at 447.662 kb on - strand, within EFB2_00424 at 447.685 kb on + strand, within EFB2_00424 at 447.685 kb on + strand, within EFB2_00424 at 447.685 kb on + strand, within EFB2_00424 at 447.686 kb on - strand, within EFB2_00424 at 447.686 kb on - strand, within EFB2_00424 at 447.733 kb on + strand, within EFB2_00424 at 447.733 kb on + strand, within EFB2_00424 at 447.733 kb on + strand, within EFB2_00424 at 447.734 kb on - strand, within EFB2_00424 at 447.734 kb on - strand, within EFB2_00424 at 447.734 kb on - strand, within EFB2_00424 at 447.734 kb on - strand, within EFB2_00424 at 447.744 kb on - strand, within EFB2_00424 at 447.846 kb on + strand, within EFB2_00424 at 447.846 kb on + strand, within EFB2_00424 at 447.846 kb on + strand, within EFB2_00424 at 447.847 kb on - strand, within EFB2_00424 at 447.847 kb on - strand, within EFB2_00424 at 447.908 kb on - strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.909 kb on + strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.910 kb on - strand, within EFB2_00424 at 447.921 kb on + strand, within EFB2_00424 at 447.921 kb on + strand, within EFB2_00424 at 447.921 kb on + strand, within EFB2_00424 at 447.922 kb on - strand, within EFB2_00424 at 447.922 kb on - strand, within EFB2_00424 at 447.922 kb on - strand, within EFB2_00424 at 447.922 kb on - strand, within EFB2_00424 at 447.927 kb on - strand, within EFB2_00424 at 447.927 kb on - strand, within EFB2_00424 at 447.955 kb on - strand, within EFB2_00424 at 447.955 kb on - strand, within EFB2_00424 at 448.011 kb on + strand, within EFB2_00424 at 448.020 kb on + strand, within EFB2_00424 at 448.020 kb on + strand, within EFB2_00424 at 448.020 kb on + strand, within EFB2_00424 at 448.020 kb on + strand, within EFB2_00424 at 448.021 kb on - strand, within EFB2_00424 at 448.021 kb on - strand, within EFB2_00424 at 448.021 kb on - strand, within EFB2_00424 at 448.042 kb on + strand, within EFB2_00424 at 448.042 kb on + strand, within EFB2_00424 at 448.042 kb on + strand, within EFB2_00424 at 448.042 kb on + strand, within EFB2_00424 at 448.043 kb on - strand, within EFB2_00424 at 448.043 kb on - strand, within EFB2_00424 at 448.081 kb on - strand, within EFB2_00424 at 448.086 kb on + strand, within EFB2_00424 at 448.086 kb on + strand, within EFB2_00424 at 448.086 kb on + strand, within EFB2_00424 at 448.086 kb on + strand, within EFB2_00424 at 448.086 kb on + strand, within EFB2_00424 at 448.086 kb on + strand, within EFB2_00424 at 448.087 kb on - strand, within EFB2_00424 at 448.087 kb on - strand, within EFB2_00424 at 448.087 kb on - strand, within EFB2_00424 at 448.101 kb on + strand, within EFB2_00424 at 448.143 kb on - strand, within EFB2_00424 at 448.174 kb on - strand, within EFB2_00424 at 448.174 kb on - strand, within EFB2_00424 at 448.213 kb on + strand, within EFB2_00424 at 448.213 kb on + strand, within EFB2_00424 at 448.214 kb on - strand, within EFB2_00424 at 448.214 kb on - strand, within EFB2_00424 at 448.214 kb on - strand, within EFB2_00424 at 448.234 kb on - strand, within EFB2_00424 at 448.234 kb on - strand, within EFB2_00424 at 448.240 kb on - strand, within EFB2_00424 at 448.280 kb on - strand, within EFB2_00424 at 448.331 kb on + strand, within EFB2_00424 at 448.331 kb on + strand, within EFB2_00424 at 448.331 kb on + strand, within EFB2_00424 at 448.332 kb on - strand, within EFB2_00424 at 448.332 kb on - strand, within EFB2_00424 at 448.332 kb on - strand, within EFB2_00424 at 448.344 kb on + strand, within EFB2_00424 at 448.344 kb on + strand, within EFB2_00424 at 448.344 kb on + strand, within EFB2_00424 at 448.363 kb on + strand, within EFB2_00424 at 448.391 kb on - strand, within EFB2_00424 at 448.391 kb on - strand, within EFB2_00424 at 448.449 kb on + strand, within EFB2_00424 at 448.449 kb on + strand, within EFB2_00424 at 448.532 kb on + strand, within EFB2_00424 at 448.533 kb on - strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.569 kb on + strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.570 kb on - strand, within EFB2_00424 at 448.632 kb on - strand, within EFB2_00424 at 448.653 kb on + strand at 448.654 kb on - strand at 448.668 kb on + strand at 448.771 kb on + strand at 448.772 kb on - strand at 448.775 kb on + strand at 448.775 kb on + strand at 448.775 kb on + strand at 448.775 kb on + strand at 448.775 kb on + strand at 448.775 kb on + strand at 448.776 kb on - strand at 448.776 kb on - strand at 448.812 kb on + strand at 448.812 kb on + strand at 448.812 kb on + strand at 448.812 kb on + strand at 448.813 kb on - strand at 448.813 kb on - strand at 448.813 kb on - strand at 448.813 kb on - strand at 448.813 kb on - strand at 448.813 kb on - strand at 448.813 kb on - strand at 448.814 kb on + strand at 448.814 kb on + strand at 448.814 kb on + strand at 448.814 kb on + strand at 448.814 kb on + strand at 448.814 kb on + strand at 448.814 kb on + strand at 448.815 kb on - strand at 448.815 kb on - strand at 448.815 kb on - strand at 448.815 kb on - strand at 448.819 kb on + strand at 448.819 kb on + strand at 448.819 kb on + strand at 448.819 kb on + strand at 448.819 kb on + strand at 448.820 kb on - strand at 448.820 kb on - strand at 448.820 kb on - strand at 448.820 kb on - strand at 448.826 kb on + strand at 448.826 kb on + strand at 448.826 kb on + strand at 448.826 kb on + strand at 448.826 kb on + strand at 448.827 kb on - strand at 448.827 kb on - strand at 448.827 kb on - strand at 448.830 kb on + strand at 448.830 kb on + strand at 448.830 kb on + strand at 448.830 kb on + strand at 448.830 kb on + strand at 448.830 kb on + strand at 448.830 kb on + strand at 448.830 kb on + strand at 448.830 kb on + strand at 448.830 kb on + strand at 448.830 kb on + strand at 448.830 kb on + strand at 448.830 kb on + strand at 448.831 kb on - strand at 448.831 kb on - strand at 448.831 kb on - strand at 448.831 kb on - strand at 448.831 kb on - strand at 448.831 kb on - strand at 448.831 kb on - strand at 448.831 kb on - strand at 448.831 kb on - strand at 448.831 kb on - strand at 448.831 kb on - strand at 448.831 kb on - strand at 448.831 kb on - strand at 448.831 kb on - strand at 448.851 kb on + strand at 448.851 kb on + strand at 448.851 kb on + strand at 448.851 kb on + strand at 448.851 kb on + strand at 448.851 kb on + strand at 448.852 kb on - strand at 448.852 kb on - strand at 448.852 kb on - strand at 448.902 kb on + strand at 448.902 kb on + strand at 448.902 kb on + strand at 448.902 kb on + strand at 448.902 kb on + strand at 448.902 kb on + strand at 448.902 kb on + strand at 448.902 kb on + strand at 448.903 kb on - strand at 448.903 kb on - strand at 448.906 kb on + strand at 448.906 kb on + strand at 448.907 kb on - strand at 448.907 kb on - strand at 448.907 kb on - strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.974 kb on + strand at 448.975 kb on - strand at 448.975 kb on - strand at 448.975 kb on - strand at 448.975 kb on - strand at 448.975 kb on - strand at 448.975 kb on - strand at 448.975 kb on - strand at 448.975 kb on - strand at 448.975 kb on - strand at 448.975 kb on - strand at 448.975 kb on - strand at 448.975 kb on - strand at 448.975 kb on - strand at 448.975 kb on - strand at 448.975 kb on - strand at 449.006 kb on + strand at 449.007 kb on - strand at 449.038 kb on + strand, within EFB2_00425 at 449.038 kb on + strand, within EFB2_00425 at 449.038 kb on + strand, within EFB2_00425 at 449.039 kb on - strand, within EFB2_00425 at 449.039 kb on - strand, within EFB2_00425 at 449.039 kb on - strand, within EFB2_00425 at 449.101 kb on + strand, within EFB2_00425 at 449.101 kb on + strand, within EFB2_00425 at 449.101 kb on + strand, within EFB2_00425 at 449.102 kb on - strand, within EFB2_00425 at 449.102 kb on - strand, within EFB2_00425 at 449.116 kb on + strand, within EFB2_00425 at 449.116 kb on + strand, within EFB2_00425 at 449.116 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.125 kb on + strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.126 kb on - strand, within EFB2_00425 at 449.163 kb on + strand, within EFB2_00425 at 449.163 kb on + strand, within EFB2_00425 at 449.163 kb on + strand, within EFB2_00425 at 449.163 kb on + strand, within EFB2_00425 at 449.163 kb on + strand, within EFB2_00425 at 449.163 kb on + strand, within EFB2_00425 at 449.163 kb on + strand, within EFB2_00425 at 449.163 kb on + strand, within EFB2_00425 at 449.164 kb on - strand, within EFB2_00425 at 449.164 kb on - strand, within EFB2_00425 at 449.164 kb on - strand, within EFB2_00425 at 449.164 kb on - strand, within EFB2_00425 at 449.164 kb on - strand, within EFB2_00425 at 449.164 kb on - strand, within EFB2_00425 at 449.188 kb on + strand, within EFB2_00425 at 449.188 kb on + strand, within EFB2_00425 at 449.188 kb on + strand, within EFB2_00425 at 449.188 kb on + strand, within EFB2_00425 at 449.188 kb on + strand, within EFB2_00425 at 449.189 kb on - strand, within EFB2_00425 at 449.189 kb on - strand, within EFB2_00425 at 449.189 kb on - strand, within EFB2_00425 at 449.189 kb on - strand, within EFB2_00425 at 449.189 kb on - strand, within EFB2_00425 at 449.189 kb on - strand, within EFB2_00425 at 449.189 kb on - strand, within EFB2_00425 at 449.195 kb on + strand, within EFB2_00425 at 449.196 kb on - strand, within EFB2_00425 at 449.196 kb on - strand, within EFB2_00425 at 449.401 kb on + strand, within EFB2_00425 at 449.401 kb on + strand, within EFB2_00425 at 449.402 kb on - strand, within EFB2_00425 at 449.437 kb on + strand, within EFB2_00425 at 449.437 kb on + strand, within EFB2_00425 at 449.446 kb on + strand, within EFB2_00425 at 449.446 kb on + strand, within EFB2_00425 at 449.457 kb on + strand, within EFB2_00425 at 449.457 kb on + strand, within EFB2_00425 at 449.457 kb on + strand, within EFB2_00425 at 449.457 kb on + strand, within EFB2_00425 at 449.457 kb on + strand, within EFB2_00425 at 449.457 kb on + strand, within EFB2_00425 at 449.457 kb on + strand, within EFB2_00425 at 449.457 kb on + strand, within EFB2_00425 at 449.457 kb on + strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.458 kb on - strand, within EFB2_00425 at 449.467 kb on - strand, within EFB2_00425 at 449.563 kb on + strand, within EFB2_00425 at 449.563 kb on + strand, within EFB2_00425 at 449.571 kb on + strand, within EFB2_00425 at 449.571 kb on + strand, within EFB2_00425 at 449.572 kb on - strand, within EFB2_00425 at 449.572 kb on - strand, within EFB2_00425 at 449.572 kb on - strand, within EFB2_00425 at 449.605 kb on + strand, within EFB2_00425 at 449.605 kb on + strand, within EFB2_00425 at 449.605 kb on + strand, within EFB2_00425 at 449.606 kb on - strand, within EFB2_00425 at 449.606 kb on - strand, within EFB2_00425 at 449.606 kb on - strand, within EFB2_00425 at 449.606 kb on - strand, within EFB2_00425 at 449.635 kb on + strand, within EFB2_00425 at 449.635 kb on + strand, within EFB2_00425 at 449.636 kb on - strand, within EFB2_00425 at 449.636 kb on - strand, within EFB2_00425 at 449.713 kb on + strand, within EFB2_00425
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) remove 446,423 + EFB2_00422 0.88 -0.3 446,423 + EFB2_00422 0.88 -1.4 446,423 + EFB2_00422 0.88 +0.7 446,423 + EFB2_00422 0.88 +1.1 446,423 + EFB2_00422 0.88 +0.5 446,423 + EFB2_00422 0.88 -0.5 446,423 + EFB2_00422 0.88 +0.7 446,423 + EFB2_00422 0.88 -1.2 446,423 + EFB2_00422 0.88 -0.0 446,423 + EFB2_00422 0.88 -0.1 446,424 - EFB2_00422 0.89 +1.6 446,424 - EFB2_00422 0.89 -0.6 446,424 - EFB2_00422 0.89 -1.2 446,424 - EFB2_00422 0.89 -0.3 446,424 - EFB2_00422 0.89 +0.8 446,424 - EFB2_00422 0.89 +1.2 446,424 - EFB2_00422 0.89 +0.2 446,424 - EFB2_00422 0.89 -0.4 446,424 - EFB2_00422 0.89 -1.2 446,424 - EFB2_00422 0.89 -2.0 446,424 - EFB2_00422 0.89 -1.6 446,424 - EFB2_00422 0.89 +0.2 446,424 - EFB2_00422 0.89 -0.5 446,424 - EFB2_00422 0.89 +1.3 446,447 - +0.4 446,520 + +1.0 446,520 + +0.9 446,520 + -1.8 446,521 - -2.9 446,521 - +0.8 446,521 - +0.0 446,522 + +0.6 446,522 + -0.5 446,522 + +0.7 446,522 + +0.1 446,522 + +0.4 446,522 + +0.7 446,522 + +1.7 446,523 - +0.5 446,523 - -0.9 446,533 + -3.0 446,533 + +0.4 446,533 + +0.2 446,533 + -0.0 446,533 + +1.3 446,533 + -0.6 446,533 + -0.8 446,533 + -1.8 446,533 + -1.1 446,533 + -0.1 446,534 - -0.8 446,534 - +0.2 446,534 - -0.6 446,563 + +0.3 446,564 - -3.5 446,570 + -1.4 446,572 + +1.6 446,573 - +0.2 446,576 + +0.7 446,576 + -1.9 446,576 + -0.0 446,576 + -0.7 446,576 + -1.4 446,576 + +0.1 446,576 + -0.1 446,576 + -0.8 446,576 + +0.2 446,577 - -0.1 446,577 - -0.1 446,577 - +0.4 446,577 - +0.4 446,577 - -0.4 446,577 - -0.9 446,577 - +1.4 446,592 - +0.9 446,658 - +1.3 446,663 + +1.1 446,663 + +0.7 446,663 + +0.9 446,664 - -2.2 446,664 - +0.9 446,664 - +0.2 446,664 - +0.1 446,664 - +0.5 446,671 + -0.9 446,671 + -1.8 446,672 - +0.2 446,697 + -0.6 446,697 + +0.8 446,697 + +0.1 446,697 + +0.4 446,697 + +0.4 446,697 + -0.7 446,697 + +1.4 446,698 - +2.2 446,698 - +2.2 446,698 - -0.7 446,699 + +0.2 446,699 + -0.3 446,699 + -0.6 446,699 + +1.8 446,699 + -0.4 446,699 + +0.9 446,700 - +1.5 446,700 - -0.2 446,700 - +0.0 446,700 - -0.6 446,700 - +1.9 446,700 - -0.2 446,700 - +0.4 446,700 - -1.5 446,700 - -1.4 446,717 + -0.0 446,717 + +0.6 446,717 + +0.5 446,717 + -0.9 446,717 + +1.4 446,717 + -0.7 446,717 + +1.5 446,717 + -0.3 446,717 + +1.4 446,718 - -0.6 446,718 - +0.3 446,718 - +2.0 446,718 - -0.9 446,771 + -1.7 446,771 + -0.2 446,771 + -1.6 446,771 + +0.9 446,771 + +2.3 446,772 - -0.1 446,772 - -0.1 446,772 - +1.4 446,772 - +0.1 446,857 + EFB2_00423 0.21 +1.0 446,857 + EFB2_00423 0.21 +1.5 446,857 + EFB2_00423 0.21 -0.0 446,857 + EFB2_00423 0.21 -2.0 446,857 + EFB2_00423 0.21 -0.1 446,857 + EFB2_00423 0.21 +2.2 446,857 + EFB2_00423 0.21 -1.4 446,857 + EFB2_00423 0.21 +2.4 446,857 + EFB2_00423 0.21 +0.6 446,857 + EFB2_00423 0.21 -0.9 446,857 + EFB2_00423 0.21 -1.2 446,857 + EFB2_00423 0.21 +0.3 446,857 + EFB2_00423 0.21 +1.0 446,857 + EFB2_00423 0.21 +1.4 446,857 + EFB2_00423 0.21 -1.7 446,857 + EFB2_00423 0.21 -1.5 446,857 + EFB2_00423 0.21 +0.1 446,857 + EFB2_00423 0.21 +1.3 446,857 + EFB2_00423 0.21 -0.5 446,857 + EFB2_00423 0.21 +2.3 446,857 + EFB2_00423 0.21 +0.8 446,857 + EFB2_00423 0.21 +2.1 446,857 + EFB2_00423 0.21 -0.4 446,857 + EFB2_00423 0.21 -0.3 446,858 - 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EFB2_00425 0.17 +0.3 449,126 - EFB2_00425 0.17 -2.8 449,126 - EFB2_00425 0.17 +1.1 449,126 - EFB2_00425 0.17 +0.4 449,126 - EFB2_00425 0.17 +1.1 449,126 - EFB2_00425 0.17 +0.9 449,126 - EFB2_00425 0.17 +1.2 449,126 - EFB2_00425 0.17 +1.2 449,126 - EFB2_00425 0.17 -0.7 449,126 - EFB2_00425 0.17 +0.4 449,126 - EFB2_00425 0.17 -1.7 449,126 - EFB2_00425 0.17 +1.6 449,126 - EFB2_00425 0.17 -1.0 449,126 - EFB2_00425 0.17 +1.1 449,126 - EFB2_00425 0.17 +2.3 449,126 - EFB2_00425 0.17 +0.3 449,163 + EFB2_00425 0.19 +1.9 449,163 + EFB2_00425 0.19 -0.6 449,163 + EFB2_00425 0.19 +0.1 449,163 + EFB2_00425 0.19 -2.9 449,163 + EFB2_00425 0.19 -0.7 449,163 + EFB2_00425 0.19 -1.0 449,163 + EFB2_00425 0.19 +0.6 449,163 + EFB2_00425 0.19 -1.6 449,164 - EFB2_00425 0.19 -1.0 449,164 - EFB2_00425 0.19 +0.9 449,164 - EFB2_00425 0.19 -3.0 449,164 - EFB2_00425 0.19 +1.7 449,164 - EFB2_00425 0.19 +1.3 449,164 - EFB2_00425 0.19 +0.3 449,188 + EFB2_00425 0.21 -0.7 449,188 + EFB2_00425 0.21 -1.6 449,188 + EFB2_00425 0.21 -0.5 449,188 + EFB2_00425 0.21 -0.5 449,188 + EFB2_00425 0.21 -1.0 449,189 - EFB2_00425 0.21 +1.5 449,189 - EFB2_00425 0.21 +0.2 449,189 - EFB2_00425 0.21 -3.7 449,189 - EFB2_00425 0.21 +1.0 449,189 - EFB2_00425 0.21 +0.6 449,189 - EFB2_00425 0.21 -1.3 449,189 - EFB2_00425 0.21 +0.8 449,195 + EFB2_00425 0.21 +0.4 449,196 - EFB2_00425 0.21 -2.5 449,196 - EFB2_00425 0.21 -0.2 449,401 + EFB2_00425 0.34 +0.3 449,401 + EFB2_00425 0.34 -0.7 449,402 - EFB2_00425 0.34 +0.6 449,437 + EFB2_00425 0.36 +0.8 449,437 + EFB2_00425 0.36 +0.4 449,446 + EFB2_00425 0.37 +1.4 449,446 + EFB2_00425 0.37 -0.1 449,457 + EFB2_00425 0.37 -1.0 449,457 + EFB2_00425 0.37 -0.9 449,457 + EFB2_00425 0.37 +1.4 449,457 + EFB2_00425 0.37 +0.3 449,457 + EFB2_00425 0.37 -0.3 449,457 + EFB2_00425 0.37 -0.9 449,457 + EFB2_00425 0.37 -0.8 449,457 + EFB2_00425 0.37 +0.1 449,457 + EFB2_00425 0.37 -0.2 449,458 - EFB2_00425 0.37 -0.3 449,458 - EFB2_00425 0.37 +0.9 449,458 - EFB2_00425 0.37 +0.2 449,458 - EFB2_00425 0.37 +0.6 449,458 - EFB2_00425 0.37 +0.2 449,458 - EFB2_00425 0.37 +0.4 449,458 - EFB2_00425 0.37 +0.2 449,458 - EFB2_00425 0.37 -1.2 449,458 - EFB2_00425 0.37 -0.9 449,458 - EFB2_00425 0.37 +2.1 449,458 - EFB2_00425 0.37 +0.9 449,458 - EFB2_00425 0.37 +0.6 449,458 - EFB2_00425 0.37 +0.8 449,458 - EFB2_00425 0.37 +1.5 449,458 - EFB2_00425 0.37 +1.1 449,467 - EFB2_00425 0.38 -3.4 449,563 + EFB2_00425 0.44 +1.2 449,563 + EFB2_00425 0.44 +2.0 449,571 + EFB2_00425 0.44 +0.6 449,571 + EFB2_00425 0.44 -0.3 449,572 - EFB2_00425 0.44 +0.0 449,572 - EFB2_00425 0.44 +0.4 449,572 - EFB2_00425 0.44 +0.1 449,605 + EFB2_00425 0.47 -0.1 449,605 + EFB2_00425 0.47 +0.3 449,605 + EFB2_00425 0.47 +1.8 449,606 - EFB2_00425 0.47 +0.6 449,606 - EFB2_00425 0.47 +0.0 449,606 - EFB2_00425 0.47 -0.7 449,606 - EFB2_00425 0.47 -0.2 449,635 + EFB2_00425 0.48 -3.5 449,635 + EFB2_00425 0.48 -3.2 449,636 - EFB2_00425 0.48 +0.6 449,636 - EFB2_00425 0.48 +0.9 449,713 + EFB2_00425 0.53 +1.0
Or see this region's nucleotide sequence