Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04403

Experiment: vio MOI1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_04401 and OHPLBJKB_04402 are separated by 62 nucleotidesOHPLBJKB_04402 and OHPLBJKB_04403 are separated by 348 nucleotidesOHPLBJKB_04403 and OHPLBJKB_04404 overlap by 4 nucleotidesOHPLBJKB_04404 and OHPLBJKB_04405 are separated by 11 nucleotidesOHPLBJKB_04405 and OHPLBJKB_04406 overlap by 14 nucleotides OHPLBJKB_04401: OHPLBJKB_04401 - Protein TraC, at 57,740 to 60,367 _04401 OHPLBJKB_04402: OHPLBJKB_04402 - hypothetical protein, at 60,430 to 60,534 _04402 OHPLBJKB_04403: OHPLBJKB_04403 - Protein TraV, at 60,883 to 61,398 _04403 OHPLBJKB_04404: OHPLBJKB_04404 - hypothetical protein, at 61,395 to 61,646 _04404 OHPLBJKB_04405: OHPLBJKB_04405 - hypothetical protein, at 61,658 to 61,855 _04405 OHPLBJKB_04406: OHPLBJKB_04406 - hypothetical protein, at 61,842 to 62,432 _04406 Position (kb) 60 61 62Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 59.962 kb on + strand, within OHPLBJKB_04401at 59.962 kb on + strand, within OHPLBJKB_04401at 59.963 kb on - strand, within OHPLBJKB_04401at 59.963 kb on - strand, within OHPLBJKB_04401at 59.964 kb on + strand, within OHPLBJKB_04401at 59.964 kb on + strand, within OHPLBJKB_04401at 59.964 kb on + strand, within OHPLBJKB_04401at 59.964 kb on + strand, within OHPLBJKB_04401at 59.965 kb on - strand, within OHPLBJKB_04401at 59.965 kb on - strand, within OHPLBJKB_04401at 59.965 kb on - strand, within OHPLBJKB_04401at 59.965 kb on - strand, within OHPLBJKB_04401at 59.965 kb on - strand, within OHPLBJKB_04401at 59.967 kb on + strand, within OHPLBJKB_04401at 59.968 kb on - strand, within OHPLBJKB_04401at 60.076 kb on + strand, within OHPLBJKB_04401at 60.115 kb on + strandat 60.116 kb on - strandat 60.116 kb on - strandat 60.116 kb on - strandat 60.175 kb on + strandat 60.176 kb on - strandat 60.222 kb on + strandat 60.223 kb on - strandat 60.421 kb on + strandat 60.428 kb on - strandat 60.431 kb on + strandat 60.511 kb on - strand, within OHPLBJKB_04402at 60.511 kb on - strand, within OHPLBJKB_04402at 60.528 kb on + strandat 60.529 kb on - strandat 60.866 kb on + strandat 60.918 kb on + strandat 60.951 kb on - strand, within OHPLBJKB_04403at 60.970 kb on - strand, within OHPLBJKB_04403at 60.971 kb on + strand, within OHPLBJKB_04403at 60.971 kb on + strand, within OHPLBJKB_04403at 60.972 kb on - strand, within OHPLBJKB_04403at 61.083 kb on + strand, within OHPLBJKB_04403at 61.291 kb on - strand, within OHPLBJKB_04403at 61.291 kb on - strand, within OHPLBJKB_04403at 61.354 kb on + strandat 61.355 kb on - strandat 61.355 kb on - strandat 61.357 kb on + strandat 61.357 kb on + strandat 61.505 kb on + strand, within OHPLBJKB_04404at 61.506 kb on - strand, within OHPLBJKB_04404at 61.508 kb on - strand, within OHPLBJKB_04404at 61.513 kb on + strand, within OHPLBJKB_04404at 61.513 kb on + strand, within OHPLBJKB_04404at 61.640 kb on + strandat 61.640 kb on + strandat 61.696 kb on + strand, within OHPLBJKB_04405at 61.749 kb on - strand, within OHPLBJKB_04405at 61.786 kb on + strand, within OHPLBJKB_04405at 61.828 kb on + strand, within OHPLBJKB_04405at 61.828 kb on + strand, within OHPLBJKB_04405at 61.831 kb on + strand, within OHPLBJKB_04405at 61.832 kb on - strand, within OHPLBJKB_04405at 61.838 kb on - strandat 61.840 kb on + strandat 61.843 kb on + strandat 61.844 kb on - strandat 62.044 kb on + strand, within OHPLBJKB_04406at 62.044 kb on + strand, within OHPLBJKB_04406at 62.044 kb on + strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.113 kb on + strand, within OHPLBJKB_04406at 62.114 kb on - strand, within OHPLBJKB_04406at 62.154 kb on + strand, within OHPLBJKB_04406at 62.155 kb on - strand, within OHPLBJKB_04406at 62.155 kb on - strand, within OHPLBJKB_04406at 62.244 kb on - strand, within OHPLBJKB_04406at 62.289 kb on + strand, within OHPLBJKB_04406at 62.290 kb on - strand, within OHPLBJKB_04406

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction vio MOI1
remove
59,962 + OHPLBJKB_04401 0.85 +4.4
59,962 + OHPLBJKB_04401 0.85 +4.2
59,963 - OHPLBJKB_04401 0.85 +5.1
59,963 - OHPLBJKB_04401 0.85 +4.9
59,964 + OHPLBJKB_04401 0.85 +5.4
59,964 + OHPLBJKB_04401 0.85 +5.5
59,964 + OHPLBJKB_04401 0.85 +5.3
59,964 + OHPLBJKB_04401 0.85 +5.1
59,965 - OHPLBJKB_04401 0.85 +5.7
59,965 - OHPLBJKB_04401 0.85 +6.3
59,965 - OHPLBJKB_04401 0.85 +3.7
59,965 - OHPLBJKB_04401 0.85 +5.4
59,965 - OHPLBJKB_04401 0.85 +4.8
59,967 + OHPLBJKB_04401 0.85 +4.9
59,968 - OHPLBJKB_04401 0.85 +5.3
60,076 + OHPLBJKB_04401 0.89 +5.2
60,115 + +5.5
60,116 - +5.0
60,116 - +5.4
60,116 - +4.2
60,175 + +5.2
60,176 - +5.4
60,222 + +4.9
60,223 - +4.5
60,421 + +4.1
60,428 - +0.2
60,431 + +4.3
60,511 - OHPLBJKB_04402 0.77 +0.7
60,511 - OHPLBJKB_04402 0.77 +0.8
60,528 + +2.6
60,529 - -0.2
60,866 + +4.8
60,918 + +5.4
60,951 - OHPLBJKB_04403 0.13 +5.8
60,970 - OHPLBJKB_04403 0.17 +5.4
60,971 + OHPLBJKB_04403 0.17 +5.0
60,971 + OHPLBJKB_04403 0.17 +6.8
60,972 - OHPLBJKB_04403 0.17 +4.9
61,083 + OHPLBJKB_04403 0.39 +5.3
61,291 - OHPLBJKB_04403 0.79 +5.4
61,291 - OHPLBJKB_04403 0.79 +5.2
61,354 + +5.1
61,355 - +5.2
61,355 - +5.9
61,357 + +4.4
61,357 + +5.0
61,505 + OHPLBJKB_04404 0.44 +5.7
61,506 - OHPLBJKB_04404 0.44 +0.7
61,508 - OHPLBJKB_04404 0.45 +0.4
61,513 + OHPLBJKB_04404 0.47 +4.9
61,513 + OHPLBJKB_04404 0.47 +5.1
61,640 + +5.2
61,640 + +5.1
61,696 + OHPLBJKB_04405 0.19 +3.9
61,749 - OHPLBJKB_04405 0.46 +0.2
61,786 + OHPLBJKB_04405 0.65 +4.5
61,828 + OHPLBJKB_04405 0.86 +4.9
61,828 + OHPLBJKB_04405 0.86 +5.3
61,831 + OHPLBJKB_04405 0.87 +5.9
61,832 - OHPLBJKB_04405 0.88 +0.2
61,838 - +2.1
61,840 + +4.7
61,843 + +4.2
61,844 - +2.3
62,044 + OHPLBJKB_04406 0.34 +5.2
62,044 + OHPLBJKB_04406 0.34 +5.7
62,044 + OHPLBJKB_04406 0.34 +5.8
62,045 - OHPLBJKB_04406 0.34 +0.7
62,045 - OHPLBJKB_04406 0.34 -1.2
62,045 - OHPLBJKB_04406 0.34 -0.5
62,045 - OHPLBJKB_04406 0.34 +2.3
62,045 - OHPLBJKB_04406 0.34 -0.8
62,045 - OHPLBJKB_04406 0.34 -0.3
62,045 - OHPLBJKB_04406 0.34 -0.5
62,113 + OHPLBJKB_04406 0.46 +5.3
62,114 - OHPLBJKB_04406 0.46 -1.1
62,154 + OHPLBJKB_04406 0.53 +6.3
62,155 - OHPLBJKB_04406 0.53 +0.6
62,155 - OHPLBJKB_04406 0.53 +0.6
62,244 - OHPLBJKB_04406 0.68 +2.9
62,289 + OHPLBJKB_04406 0.76 +4.8
62,290 - OHPLBJKB_04406 0.76 +0.7

Or see this region's nucleotide sequence