Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03758

Experiment: vio MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03757 and OHPLBJKB_03758 are separated by 64 nucleotidesOHPLBJKB_03758 and OHPLBJKB_03759 are separated by 211 nucleotides OHPLBJKB_03757: OHPLBJKB_03757 - N-acetylneuraminate epimerase, at 3,942,232 to 3,943,338 _03757 OHPLBJKB_03758: OHPLBJKB_03758 - putative 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 3,943,403 to 3,944,383 _03758 OHPLBJKB_03759: OHPLBJKB_03759 - hypothetical protein, at 3,944,595 to 3,945,467 _03759 Position (kb) 3943 3944 3945Strain fitness (log2 ratio) -1 0 1 2at 3942.543 kb on + strand, within OHPLBJKB_03757at 3942.543 kb on + strand, within OHPLBJKB_03757at 3942.559 kb on + strand, within OHPLBJKB_03757at 3942.635 kb on + strand, within OHPLBJKB_03757at 3942.653 kb on - strand, within OHPLBJKB_03757at 3942.653 kb on - strand, within OHPLBJKB_03757at 3942.692 kb on - strand, within OHPLBJKB_03757at 3943.114 kb on + strand, within OHPLBJKB_03757at 3943.114 kb on + strand, within OHPLBJKB_03757at 3943.144 kb on - strand, within OHPLBJKB_03757at 3943.430 kb on + strandat 3943.433 kb on + strandat 3943.434 kb on - strandat 3943.434 kb on - strandat 3943.459 kb on + strandat 3943.460 kb on - strandat 3943.526 kb on - strand, within OHPLBJKB_03758at 3943.589 kb on - strand, within OHPLBJKB_03758at 3943.589 kb on - strand, within OHPLBJKB_03758at 3943.671 kb on - strand, within OHPLBJKB_03758at 3943.696 kb on + strand, within OHPLBJKB_03758at 3943.710 kb on + strand, within OHPLBJKB_03758at 3943.720 kb on + strand, within OHPLBJKB_03758at 3943.720 kb on + strand, within OHPLBJKB_03758at 3943.799 kb on + strand, within OHPLBJKB_03758at 3943.953 kb on + strand, within OHPLBJKB_03758at 3943.953 kb on + strand, within OHPLBJKB_03758at 3943.953 kb on + strand, within OHPLBJKB_03758at 3943.954 kb on - strand, within OHPLBJKB_03758at 3943.990 kb on + strand, within OHPLBJKB_03758at 3943.997 kb on - strand, within OHPLBJKB_03758at 3944.047 kb on + strand, within OHPLBJKB_03758at 3944.051 kb on - strand, within OHPLBJKB_03758at 3944.118 kb on - strand, within OHPLBJKB_03758at 3944.118 kb on - strand, within OHPLBJKB_03758at 3944.118 kb on - strand, within OHPLBJKB_03758at 3944.126 kb on - strand, within OHPLBJKB_03758at 3944.126 kb on - strand, within OHPLBJKB_03758at 3944.146 kb on + strand, within OHPLBJKB_03758at 3944.162 kb on - strand, within OHPLBJKB_03758at 3944.165 kb on - strand, within OHPLBJKB_03758at 3944.235 kb on + strand, within OHPLBJKB_03758at 3944.236 kb on - strand, within OHPLBJKB_03758at 3944.246 kb on + strand, within OHPLBJKB_03758at 3944.349 kb on + strandat 3944.350 kb on - strandat 3944.477 kb on + strandat 3944.649 kb on - strandat 3944.695 kb on + strand, within OHPLBJKB_03759at 3944.695 kb on + strand, within OHPLBJKB_03759at 3944.696 kb on - strand, within OHPLBJKB_03759at 3944.751 kb on + strand, within OHPLBJKB_03759at 3944.751 kb on + strand, within OHPLBJKB_03759at 3944.752 kb on - strand, within OHPLBJKB_03759at 3944.771 kb on - strand, within OHPLBJKB_03759at 3944.814 kb on - strand, within OHPLBJKB_03759at 3944.830 kb on + strand, within OHPLBJKB_03759at 3944.854 kb on + strand, within OHPLBJKB_03759at 3944.855 kb on - strand, within OHPLBJKB_03759at 3944.855 kb on - strand, within OHPLBJKB_03759at 3944.855 kb on - strand, within OHPLBJKB_03759at 3944.922 kb on + strand, within OHPLBJKB_03759at 3944.990 kb on + strand, within OHPLBJKB_03759at 3944.990 kb on + strand, within OHPLBJKB_03759at 3945.127 kb on - strand, within OHPLBJKB_03759at 3945.129 kb on - strand, within OHPLBJKB_03759at 3945.129 kb on - strand, within OHPLBJKB_03759at 3945.132 kb on + strand, within OHPLBJKB_03759at 3945.132 kb on + strand, within OHPLBJKB_03759at 3945.132 kb on + strand, within OHPLBJKB_03759at 3945.132 kb on + strand, within OHPLBJKB_03759at 3945.132 kb on + strand, within OHPLBJKB_03759at 3945.133 kb on - strand, within OHPLBJKB_03759at 3945.156 kb on - strand, within OHPLBJKB_03759at 3945.158 kb on + strand, within OHPLBJKB_03759at 3945.158 kb on + strand, within OHPLBJKB_03759at 3945.159 kb on - strand, within OHPLBJKB_03759at 3945.202 kb on + strand, within OHPLBJKB_03759at 3945.203 kb on - strand, within OHPLBJKB_03759at 3945.203 kb on - strand, within OHPLBJKB_03759at 3945.203 kb on - strand, within OHPLBJKB_03759at 3945.203 kb on - strand, within OHPLBJKB_03759at 3945.281 kb on + strand, within OHPLBJKB_03759at 3945.282 kb on - strand, within OHPLBJKB_03759at 3945.361 kb on + strand, within OHPLBJKB_03759

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Per-strain Table

Position Strand Gene LocusTag Fraction vio MOI1
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3,942,543 + OHPLBJKB_03757 0.28 -1.4
3,942,543 + OHPLBJKB_03757 0.28 -1.0
3,942,559 + OHPLBJKB_03757 0.30 -0.8
3,942,635 + OHPLBJKB_03757 0.36 +0.1
3,942,653 - OHPLBJKB_03757 0.38 -0.7
3,942,653 - OHPLBJKB_03757 0.38 +1.2
3,942,692 - OHPLBJKB_03757 0.42 +0.4
3,943,114 + OHPLBJKB_03757 0.80 -0.9
3,943,114 + OHPLBJKB_03757 0.80 -0.7
3,943,144 - OHPLBJKB_03757 0.82 +1.1
3,943,430 + +0.8
3,943,433 + +0.5
3,943,434 - +0.1
3,943,434 - +0.5
3,943,459 + +0.2
3,943,460 - +0.4
3,943,526 - OHPLBJKB_03758 0.13 +1.9
3,943,589 - OHPLBJKB_03758 0.19 -0.7
3,943,589 - OHPLBJKB_03758 0.19 -0.8
3,943,671 - OHPLBJKB_03758 0.27 +0.0
3,943,696 + OHPLBJKB_03758 0.30 -0.2
3,943,710 + OHPLBJKB_03758 0.31 -1.5
3,943,720 + OHPLBJKB_03758 0.32 -0.8
3,943,720 + OHPLBJKB_03758 0.32 +1.0
3,943,799 + OHPLBJKB_03758 0.40 -0.3
3,943,953 + OHPLBJKB_03758 0.56 +0.1
3,943,953 + OHPLBJKB_03758 0.56 +0.6
3,943,953 + OHPLBJKB_03758 0.56 +2.2
3,943,954 - OHPLBJKB_03758 0.56 +0.2
3,943,990 + OHPLBJKB_03758 0.60 -0.6
3,943,997 - OHPLBJKB_03758 0.61 -0.0
3,944,047 + OHPLBJKB_03758 0.66 -0.8
3,944,051 - OHPLBJKB_03758 0.66 -0.0
3,944,118 - OHPLBJKB_03758 0.73 +0.4
3,944,118 - OHPLBJKB_03758 0.73 -0.1
3,944,118 - OHPLBJKB_03758 0.73 -0.9
3,944,126 - OHPLBJKB_03758 0.74 -0.3
3,944,126 - OHPLBJKB_03758 0.74 -0.4
3,944,146 + OHPLBJKB_03758 0.76 -0.1
3,944,162 - OHPLBJKB_03758 0.77 -1.3
3,944,165 - OHPLBJKB_03758 0.78 +0.7
3,944,235 + OHPLBJKB_03758 0.85 -0.2
3,944,236 - OHPLBJKB_03758 0.85 -1.7
3,944,246 + OHPLBJKB_03758 0.86 +0.3
3,944,349 + -0.6
3,944,350 - +1.0
3,944,477 + +0.2
3,944,649 - +0.6
3,944,695 + OHPLBJKB_03759 0.11 -0.6
3,944,695 + OHPLBJKB_03759 0.11 -0.1
3,944,696 - OHPLBJKB_03759 0.12 +0.4
3,944,751 + OHPLBJKB_03759 0.18 +1.1
3,944,751 + OHPLBJKB_03759 0.18 -0.7
3,944,752 - OHPLBJKB_03759 0.18 +0.4
3,944,771 - OHPLBJKB_03759 0.20 -0.8
3,944,814 - OHPLBJKB_03759 0.25 +1.2
3,944,830 + OHPLBJKB_03759 0.27 +0.8
3,944,854 + OHPLBJKB_03759 0.30 +0.3
3,944,855 - OHPLBJKB_03759 0.30 +1.0
3,944,855 - OHPLBJKB_03759 0.30 -0.8
3,944,855 - OHPLBJKB_03759 0.30 +0.3
3,944,922 + OHPLBJKB_03759 0.37 +0.6
3,944,990 + OHPLBJKB_03759 0.45 -0.2
3,944,990 + OHPLBJKB_03759 0.45 -1.1
3,945,127 - OHPLBJKB_03759 0.61 -0.1
3,945,129 - OHPLBJKB_03759 0.61 -0.3
3,945,129 - OHPLBJKB_03759 0.61 +0.1
3,945,132 + OHPLBJKB_03759 0.62 -0.2
3,945,132 + OHPLBJKB_03759 0.62 -0.9
3,945,132 + OHPLBJKB_03759 0.62 -0.4
3,945,132 + OHPLBJKB_03759 0.62 +0.8
3,945,132 + OHPLBJKB_03759 0.62 -0.8
3,945,133 - OHPLBJKB_03759 0.62 -0.3
3,945,156 - OHPLBJKB_03759 0.64 +0.6
3,945,158 + OHPLBJKB_03759 0.64 -0.5
3,945,158 + OHPLBJKB_03759 0.64 +0.6
3,945,159 - OHPLBJKB_03759 0.65 +0.6
3,945,202 + OHPLBJKB_03759 0.70 -0.1
3,945,203 - OHPLBJKB_03759 0.70 -0.3
3,945,203 - OHPLBJKB_03759 0.70 +0.2
3,945,203 - OHPLBJKB_03759 0.70 +1.2
3,945,203 - OHPLBJKB_03759 0.70 -1.3
3,945,281 + OHPLBJKB_03759 0.79 +0.3
3,945,282 - OHPLBJKB_03759 0.79 +0.2
3,945,361 + OHPLBJKB_03759 0.88 +0.5

Or see this region's nucleotide sequence