Experiment: vio MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00870 and OHPLBJKB_00871 are separated by 218 nucleotides OHPLBJKB_00871 and OHPLBJKB_00872 are separated by 44 nucleotides OHPLBJKB_00872 and OHPLBJKB_00873 are separated by 183 nucleotides OHPLBJKB_00873 and OHPLBJKB_00874 are separated by 167 nucleotides
OHPLBJKB_00870: OHPLBJKB_00870 - hypothetical protein, at 896,605 to 897,036
_00870
OHPLBJKB_00871: OHPLBJKB_00871 - Transcriptional regulatory protein LiaR, at 897,255 to 897,887
_00871
OHPLBJKB_00872: OHPLBJKB_00872 - hypothetical protein, at 897,932 to 898,306
_00872
OHPLBJKB_00873: OHPLBJKB_00873 - hypothetical protein, at 898,490 to 898,708
_00873
OHPLBJKB_00874: OHPLBJKB_00874 - Transcriptional regulator HilA, at 898,876 to 900,252
_00874
Position (kb) 897
898
899 Strain fitness (log2 ratio) -2
-1
0
1
2 at 897.381 kb on - strand, within OHPLBJKB_00871 at 897.484 kb on + strand, within OHPLBJKB_00871 at 897.485 kb on - strand, within OHPLBJKB_00871 at 897.485 kb on - strand, within OHPLBJKB_00871 at 897.595 kb on + strand, within OHPLBJKB_00871 at 897.627 kb on + strand, within OHPLBJKB_00871 at 897.646 kb on + strand, within OHPLBJKB_00871 at 897.698 kb on + strand, within OHPLBJKB_00871 at 897.863 kb on - strand at 897.954 kb on + strand at 897.955 kb on - strand at 897.976 kb on - strand, within OHPLBJKB_00872 at 898.020 kb on + strand, within OHPLBJKB_00872 at 898.067 kb on - strand, within OHPLBJKB_00872 at 898.598 kb on - strand, within OHPLBJKB_00873 at 898.842 kb on + strand at 898.927 kb on + strand at 899.001 kb on - strand at 899.001 kb on - strand at 899.005 kb on - strand at 899.008 kb on + strand at 899.122 kb on - strand, within OHPLBJKB_00874 at 899.124 kb on - strand, within OHPLBJKB_00874 at 899.127 kb on - strand, within OHPLBJKB_00874 at 899.161 kb on - strand, within OHPLBJKB_00874 at 899.186 kb on - strand, within OHPLBJKB_00874 at 899.227 kb on - strand, within OHPLBJKB_00874
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI1 remove 897,381 - OHPLBJKB_00871 0.20 +1.0 897,484 + OHPLBJKB_00871 0.36 -0.7 897,485 - OHPLBJKB_00871 0.36 +0.0 897,485 - OHPLBJKB_00871 0.36 -1.0 897,595 + OHPLBJKB_00871 0.54 +0.1 897,627 + OHPLBJKB_00871 0.59 +0.3 897,646 + OHPLBJKB_00871 0.62 +0.1 897,698 + OHPLBJKB_00871 0.70 -0.6 897,863 - -0.4 897,954 + -1.0 897,955 - +0.1 897,976 - OHPLBJKB_00872 0.12 -2.4 898,020 + OHPLBJKB_00872 0.23 -0.5 898,067 - OHPLBJKB_00872 0.36 -1.0 898,598 - OHPLBJKB_00873 0.49 -1.0 898,842 + +0.2 898,927 + +0.4 899,001 - -1.2 899,001 - +0.3 899,005 - +0.4 899,008 + +0.5 899,122 - OHPLBJKB_00874 0.18 +0.2 899,124 - OHPLBJKB_00874 0.18 +0.6 899,127 - OHPLBJKB_00874 0.18 -0.8 899,161 - OHPLBJKB_00874 0.21 +2.0 899,186 - OHPLBJKB_00874 0.23 -0.0 899,227 - OHPLBJKB_00874 0.25 +1.4
Or see this region's nucleotide sequence