Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lpxK and msbA overlap by 4 nucleotides msbA and ycaI are separated by 36 nucleotides
MCAODC_24840: lpxK - tetraacyldisaccharide 4'-kinase, at 1,681,718 to 1,682,704
lpxK
MCAODC_24845: msbA - lipid A ABC transporter ATP-binding protein/permease MsbA, at 1,682,701 to 1,684,449
msbA
MCAODC_24850: ycaI - ComEC family protein, at 1,684,486 to 1,686,750
ycaI
Position (kb)
1682
1683
1684
1685 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1681.716 kb on - strand at 1681.719 kb on + strand at 1681.719 kb on + strand at 1681.720 kb on - strand at 1684.557 kb on + strand at 1684.611 kb on + strand at 1684.623 kb on + strand at 1684.623 kb on + strand at 1684.624 kb on - strand at 1684.624 kb on - strand at 1684.624 kb on - strand at 1684.624 kb on - strand at 1684.659 kb on + strand at 1684.680 kb on + strand at 1684.682 kb on + strand at 1684.682 kb on + strand at 1684.683 kb on - strand at 1684.683 kb on - strand at 1684.730 kb on - strand, within ycaI at 1684.749 kb on + strand, within ycaI at 1684.749 kb on + strand, within ycaI at 1684.749 kb on + strand, within ycaI at 1684.750 kb on - strand, within ycaI at 1684.849 kb on + strand, within ycaI at 1684.849 kb on + strand, within ycaI at 1684.860 kb on + strand, within ycaI at 1684.881 kb on + strand, within ycaI at 1684.900 kb on - strand, within ycaI at 1684.924 kb on + strand, within ycaI at 1684.924 kb on + strand, within ycaI at 1684.924 kb on + strand, within ycaI at 1684.925 kb on - strand, within ycaI at 1685.024 kb on - strand, within ycaI at 1685.037 kb on + strand, within ycaI at 1685.037 kb on + strand, within ycaI at 1685.038 kb on - strand, within ycaI at 1685.038 kb on - strand, within ycaI at 1685.038 kb on - strand, within ycaI at 1685.038 kb on - strand, within ycaI at 1685.045 kb on - strand, within ycaI at 1685.112 kb on + strand, within ycaI at 1685.112 kb on + strand, within ycaI at 1685.152 kb on - strand, within ycaI at 1685.246 kb on + strand, within ycaI at 1685.247 kb on - strand, within ycaI at 1685.306 kb on - strand, within ycaI at 1685.306 kb on - strand, within ycaI at 1685.344 kb on + strand, within ycaI at 1685.354 kb on - strand, within ycaI at 1685.363 kb on - strand, within ycaI
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 1,681,716 - +1.8 1,681,719 + -1.1 1,681,719 + -2.1 1,681,720 - -0.2 1,684,557 + -0.5 1,684,611 + +1.1 1,684,623 + +0.0 1,684,623 + +0.5 1,684,624 - -0.9 1,684,624 - +0.3 1,684,624 - -1.2 1,684,624 - -0.2 1,684,659 + +0.2 1,684,680 + +0.1 1,684,682 + -0.6 1,684,682 + -0.4 1,684,683 - -0.2 1,684,683 - +0.3 1,684,730 - ycaI MCAODC_24850 0.11 +0.3 1,684,749 + ycaI MCAODC_24850 0.12 -0.1 1,684,749 + ycaI MCAODC_24850 0.12 -0.5 1,684,749 + ycaI MCAODC_24850 0.12 -0.8 1,684,750 - ycaI MCAODC_24850 0.12 +0.2 1,684,849 + ycaI MCAODC_24850 0.16 -0.6 1,684,849 + ycaI MCAODC_24850 0.16 -3.2 1,684,860 + ycaI MCAODC_24850 0.17 +0.4 1,684,881 + ycaI MCAODC_24850 0.17 +0.2 1,684,900 - ycaI MCAODC_24850 0.18 -1.2 1,684,924 + ycaI MCAODC_24850 0.19 -1.8 1,684,924 + ycaI MCAODC_24850 0.19 +0.3 1,684,924 + ycaI MCAODC_24850 0.19 -0.8 1,684,925 - ycaI MCAODC_24850 0.19 +1.8 1,685,024 - ycaI MCAODC_24850 0.24 -0.2 1,685,037 + ycaI MCAODC_24850 0.24 -1.2 1,685,037 + ycaI MCAODC_24850 0.24 +0.1 1,685,038 - ycaI MCAODC_24850 0.24 +0.5 1,685,038 - ycaI MCAODC_24850 0.24 -0.8 1,685,038 - ycaI MCAODC_24850 0.24 +0.2 1,685,038 - ycaI MCAODC_24850 0.24 +0.4 1,685,045 - ycaI MCAODC_24850 0.25 +2.3 1,685,112 + ycaI MCAODC_24850 0.28 +1.8 1,685,112 + ycaI MCAODC_24850 0.28 -1.0 1,685,152 - ycaI MCAODC_24850 0.29 -0.8 1,685,246 + ycaI MCAODC_24850 0.34 +0.3 1,685,247 - ycaI MCAODC_24850 0.34 -0.4 1,685,306 - ycaI MCAODC_24850 0.36 -1.9 1,685,306 - ycaI MCAODC_24850 0.36 +0.5 1,685,344 + ycaI MCAODC_24850 0.38 +0.0 1,685,354 - ycaI MCAODC_24850 0.38 +1.2 1,685,363 - ycaI MCAODC_24850 0.39 +0.4
Or see this region's nucleotide sequence