Strain Fitness in Escherichia coli ECRC101 around MCAODC_24845

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxK and msbA overlap by 4 nucleotidesmsbA and ycaI are separated by 36 nucleotides MCAODC_24840: lpxK - tetraacyldisaccharide 4'-kinase, at 1,681,718 to 1,682,704 lpxK MCAODC_24845: msbA - lipid A ABC transporter ATP-binding protein/permease MsbA, at 1,682,701 to 1,684,449 msbA MCAODC_24850: ycaI - ComEC family protein, at 1,684,486 to 1,686,750 ycaI Position (kb) 1682 1683 1684 1685Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1681.716 kb on - strandat 1681.719 kb on + strandat 1681.719 kb on + strandat 1681.720 kb on - strandat 1684.557 kb on + strandat 1684.611 kb on + strandat 1684.623 kb on + strandat 1684.623 kb on + strandat 1684.624 kb on - strandat 1684.624 kb on - strandat 1684.624 kb on - strandat 1684.624 kb on - strandat 1684.659 kb on + strandat 1684.680 kb on + strandat 1684.682 kb on + strandat 1684.682 kb on + strandat 1684.683 kb on - strandat 1684.683 kb on - strandat 1684.730 kb on - strand, within ycaIat 1684.749 kb on + strand, within ycaIat 1684.749 kb on + strand, within ycaIat 1684.749 kb on + strand, within ycaIat 1684.750 kb on - strand, within ycaIat 1684.849 kb on + strand, within ycaIat 1684.849 kb on + strand, within ycaIat 1684.860 kb on + strand, within ycaIat 1684.881 kb on + strand, within ycaIat 1684.900 kb on - strand, within ycaIat 1684.924 kb on + strand, within ycaIat 1684.924 kb on + strand, within ycaIat 1684.924 kb on + strand, within ycaIat 1684.925 kb on - strand, within ycaIat 1685.024 kb on - strand, within ycaIat 1685.037 kb on + strand, within ycaIat 1685.037 kb on + strand, within ycaIat 1685.038 kb on - strand, within ycaIat 1685.038 kb on - strand, within ycaIat 1685.038 kb on - strand, within ycaIat 1685.038 kb on - strand, within ycaIat 1685.045 kb on - strand, within ycaIat 1685.112 kb on + strand, within ycaIat 1685.112 kb on + strand, within ycaIat 1685.152 kb on - strand, within ycaIat 1685.246 kb on + strand, within ycaIat 1685.247 kb on - strand, within ycaIat 1685.306 kb on - strand, within ycaIat 1685.306 kb on - strand, within ycaIat 1685.344 kb on + strand, within ycaIat 1685.354 kb on - strand, within ycaIat 1685.363 kb on - strand, within ycaI

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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1,681,716 - +1.8
1,681,719 + -1.1
1,681,719 + -2.1
1,681,720 - -0.2
1,684,557 + -0.5
1,684,611 + +1.1
1,684,623 + +0.0
1,684,623 + +0.5
1,684,624 - -0.9
1,684,624 - +0.3
1,684,624 - -1.2
1,684,624 - -0.2
1,684,659 + +0.2
1,684,680 + +0.1
1,684,682 + -0.6
1,684,682 + -0.4
1,684,683 - -0.2
1,684,683 - +0.3
1,684,730 - ycaI MCAODC_24850 0.11 +0.3
1,684,749 + ycaI MCAODC_24850 0.12 -0.1
1,684,749 + ycaI MCAODC_24850 0.12 -0.5
1,684,749 + ycaI MCAODC_24850 0.12 -0.8
1,684,750 - ycaI MCAODC_24850 0.12 +0.2
1,684,849 + ycaI MCAODC_24850 0.16 -0.6
1,684,849 + ycaI MCAODC_24850 0.16 -3.2
1,684,860 + ycaI MCAODC_24850 0.17 +0.4
1,684,881 + ycaI MCAODC_24850 0.17 +0.2
1,684,900 - ycaI MCAODC_24850 0.18 -1.2
1,684,924 + ycaI MCAODC_24850 0.19 -1.8
1,684,924 + ycaI MCAODC_24850 0.19 +0.3
1,684,924 + ycaI MCAODC_24850 0.19 -0.8
1,684,925 - ycaI MCAODC_24850 0.19 +1.8
1,685,024 - ycaI MCAODC_24850 0.24 -0.2
1,685,037 + ycaI MCAODC_24850 0.24 -1.2
1,685,037 + ycaI MCAODC_24850 0.24 +0.1
1,685,038 - ycaI MCAODC_24850 0.24 +0.5
1,685,038 - ycaI MCAODC_24850 0.24 -0.8
1,685,038 - ycaI MCAODC_24850 0.24 +0.2
1,685,038 - ycaI MCAODC_24850 0.24 +0.4
1,685,045 - ycaI MCAODC_24850 0.25 +2.3
1,685,112 + ycaI MCAODC_24850 0.28 +1.8
1,685,112 + ycaI MCAODC_24850 0.28 -1.0
1,685,152 - ycaI MCAODC_24850 0.29 -0.8
1,685,246 + ycaI MCAODC_24850 0.34 +0.3
1,685,247 - ycaI MCAODC_24850 0.34 -0.4
1,685,306 - ycaI MCAODC_24850 0.36 -1.9
1,685,306 - ycaI MCAODC_24850 0.36 +0.5
1,685,344 + ycaI MCAODC_24850 0.38 +0.0
1,685,354 - ycaI MCAODC_24850 0.38 +1.2
1,685,363 - ycaI MCAODC_24850 0.39 +0.4

Or see this region's nucleotide sequence