Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ureG and ureF are separated by 11 nucleotides ureF and ureE are separated by 0 nucleotides ureE and ureC are separated by 9 nucleotides
MCAODC_23615: ureG - urease accessory protein UreG, at 1,445,095 to 1,445,712
ureG
MCAODC_23620: ureF - Urease accessory protein UreF, at 1,445,724 to 1,446,398
ureF
MCAODC_23625: ureE - urease accessory protein UreE, at 1,446,399 to 1,446,863
ureE
MCAODC_23630: ureC - urease subunit alpha, at 1,446,873 to 1,448,576
ureC
Position (kb) 1446
1447 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1445.491 kb on - strand, within ureG at 1445.579 kb on + strand, within ureG at 1445.579 kb on + strand, within ureG at 1445.704 kb on + strand at 1445.705 kb on - strand at 1445.705 kb on - strand at 1445.705 kb on - strand at 1445.715 kb on + strand at 1445.725 kb on + strand at 1445.747 kb on - strand at 1446.448 kb on + strand, within ureE at 1446.516 kb on - strand, within ureE at 1446.562 kb on - strand, within ureE at 1446.615 kb on - strand, within ureE at 1446.668 kb on + strand, within ureE at 1446.857 kb on - strand at 1446.886 kb on + strand at 1446.955 kb on + strand at 1446.975 kb on + strand at 1446.975 kb on + strand at 1446.977 kb on + strand at 1446.977 kb on + strand at 1446.978 kb on - strand at 1447.035 kb on + strand at 1447.062 kb on - strand, within ureC at 1447.349 kb on + strand, within ureC at 1447.350 kb on - strand, within ureC at 1447.350 kb on - strand, within ureC at 1447.369 kb on + strand, within ureC at 1447.370 kb on - strand, within ureC at 1447.370 kb on - strand, within ureC at 1447.468 kb on - strand, within ureC at 1447.468 kb on - strand, within ureC at 1447.468 kb on - strand, within ureC at 1447.468 kb on - strand, within ureC at 1447.468 kb on - strand, within ureC at 1447.587 kb on + strand, within ureC at 1447.588 kb on - strand, within ureC at 1447.653 kb on - strand, within ureC at 1447.653 kb on - strand, within ureC at 1447.653 kb on - strand, within ureC at 1447.666 kb on + strand, within ureC at 1447.666 kb on + strand, within ureC at 1447.725 kb on - strand, within ureC at 1447.770 kb on - strand, within ureC at 1447.770 kb on - strand, within ureC at 1447.770 kb on - strand, within ureC at 1447.832 kb on + strand, within ureC at 1447.833 kb on - strand, within ureC
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 1,445,491 - ureG MCAODC_23615 0.64 +0.2 1,445,579 + ureG MCAODC_23615 0.78 -0.2 1,445,579 + ureG MCAODC_23615 0.78 +2.1 1,445,704 + -1.4 1,445,705 - -0.6 1,445,705 - -0.1 1,445,705 - -0.5 1,445,715 + -0.2 1,445,725 + +0.1 1,445,747 - -0.7 1,446,448 + ureE MCAODC_23625 0.11 +0.3 1,446,516 - ureE MCAODC_23625 0.25 -0.4 1,446,562 - ureE MCAODC_23625 0.35 -0.9 1,446,615 - ureE MCAODC_23625 0.46 -0.5 1,446,668 + ureE MCAODC_23625 0.58 -0.2 1,446,857 - -0.9 1,446,886 + -1.9 1,446,955 + +0.1 1,446,975 + -0.2 1,446,975 + -0.2 1,446,977 + +1.6 1,446,977 + +1.3 1,446,978 - -0.4 1,447,035 + +1.6 1,447,062 - ureC MCAODC_23630 0.11 -0.4 1,447,349 + ureC MCAODC_23630 0.28 -0.6 1,447,350 - ureC MCAODC_23630 0.28 -0.9 1,447,350 - ureC MCAODC_23630 0.28 -0.9 1,447,369 + ureC MCAODC_23630 0.29 -0.7 1,447,370 - ureC MCAODC_23630 0.29 +1.6 1,447,370 - ureC MCAODC_23630 0.29 -0.8 1,447,468 - ureC MCAODC_23630 0.35 +0.3 1,447,468 - ureC MCAODC_23630 0.35 +0.3 1,447,468 - ureC MCAODC_23630 0.35 -0.4 1,447,468 - ureC MCAODC_23630 0.35 +1.6 1,447,468 - ureC MCAODC_23630 0.35 +0.8 1,447,587 + ureC MCAODC_23630 0.42 +0.8 1,447,588 - ureC MCAODC_23630 0.42 -0.2 1,447,653 - ureC MCAODC_23630 0.46 +0.9 1,447,653 - ureC MCAODC_23630 0.46 -0.8 1,447,653 - ureC MCAODC_23630 0.46 +1.2 1,447,666 + ureC MCAODC_23630 0.47 +1.6 1,447,666 + ureC MCAODC_23630 0.47 +0.6 1,447,725 - ureC MCAODC_23630 0.50 +0.1 1,447,770 - ureC MCAODC_23630 0.53 +0.1 1,447,770 - ureC MCAODC_23630 0.53 +2.0 1,447,770 - ureC MCAODC_23630 0.53 -0.1 1,447,832 + ureC MCAODC_23630 0.56 -0.4 1,447,833 - ureC MCAODC_23630 0.56 +1.6
Or see this region's nucleotide sequence