Strain Fitness in Escherichia coli ECRC101 around MCAODC_23350

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_23330 and MCAODC_23335 are separated by 53 nucleotidesMCAODC_23335 and MCAODC_23340 overlap by 119 nucleotidesMCAODC_23340 and MCAODC_23345 are separated by 112 nucleotidesMCAODC_23345 and MCAODC_23350 are separated by 47 nucleotidesMCAODC_23350 and spo0J are separated by 368 nucleotides MCAODC_23330: MCAODC_23330 - putative transposase of insertion sequence IS682, at 1,398,383 to 1,398,808 _23330 MCAODC_23335: MCAODC_23335 - Integrase catalytic domain-containing protein, at 1,398,862 to 1,399,110 _23335 MCAODC_23340: MCAODC_23340 - BfpM-like protein, at 1,398,992 to 1,399,492 _23340 MCAODC_23345: MCAODC_23345 - hypothetical protein, at 1,399,605 to 1,399,760 _23345 MCAODC_23350: MCAODC_23350 - hypothetical protein, at 1,399,808 to 1,400,452 _23350 MCAODC_23355: spo0J - transcriptional regulator, at 1,400,821 to 1,401,459 spo0J MCAODC_23360: ybdN - phosphoadenosine phosphosulfate reductase, at 1,401,444 to 1,402,676 ybdN Position (kb) 1399 1400 1401Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1398.812 kb on + strandat 1398.812 kb on + strandat 1398.812 kb on + strandat 1398.812 kb on + strandat 1398.812 kb on + strandat 1398.813 kb on - strandat 1398.824 kb on + strandat 1398.826 kb on + strandat 1398.842 kb on - strandat 1398.872 kb on - strandat 1399.189 kb on + strand, within MCAODC_23340at 1399.467 kb on - strandat 1399.536 kb on - strandat 1399.694 kb on - strand, within MCAODC_23345at 1399.698 kb on - strand, within MCAODC_23345at 1399.730 kb on - strand, within MCAODC_23345at 1399.778 kb on - strandat 1400.007 kb on + strand, within MCAODC_23350at 1400.029 kb on - strand, within MCAODC_23350at 1400.227 kb on - strand, within MCAODC_23350at 1400.227 kb on - strand, within MCAODC_23350at 1400.251 kb on + strand, within MCAODC_23350at 1400.336 kb on + strand, within MCAODC_23350at 1400.336 kb on + strand, within MCAODC_23350at 1400.337 kb on - strand, within MCAODC_23350at 1400.370 kb on + strand, within MCAODC_23350at 1400.425 kb on + strandat 1400.426 kb on - strandat 1400.453 kb on + strandat 1400.456 kb on + strandat 1400.456 kb on + strandat 1400.602 kb on + strandat 1400.603 kb on - strandat 1400.618 kb on + strandat 1400.803 kb on + strandat 1400.804 kb on - strandat 1400.805 kb on + strandat 1400.806 kb on - strandat 1400.806 kb on - strandat 1400.809 kb on + strandat 1400.880 kb on + strandat 1401.019 kb on - strand, within spo0Jat 1401.040 kb on - strand, within spo0Jat 1401.073 kb on - strand, within spo0Jat 1401.266 kb on + strand, within spo0Jat 1401.267 kb on - strand, within spo0Jat 1401.376 kb on + strand, within spo0Jat 1401.376 kb on + strand, within spo0Jat 1401.377 kb on - strand, within spo0Jat 1401.377 kb on - strand, within spo0Jat 1401.410 kb on + strandat 1401.433 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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1,398,812 + -1.9
1,398,812 + +0.6
1,398,812 + +0.6
1,398,812 + -0.4
1,398,812 + +0.1
1,398,813 - -1.3
1,398,824 + +0.9
1,398,826 + +1.6
1,398,842 - +1.6
1,398,872 - -1.2
1,399,189 + MCAODC_23340 0.39 -1.2
1,399,467 - +0.9
1,399,536 - -0.4
1,399,694 - MCAODC_23345 0.57 -0.7
1,399,698 - MCAODC_23345 0.60 -1.2
1,399,730 - MCAODC_23345 0.80 +0.3
1,399,778 - +3.2
1,400,007 + MCAODC_23350 0.31 +0.9
1,400,029 - MCAODC_23350 0.34 -2.5
1,400,227 - MCAODC_23350 0.65 +2.6
1,400,227 - MCAODC_23350 0.65 +1.6
1,400,251 + MCAODC_23350 0.69 -1.0
1,400,336 + MCAODC_23350 0.82 +1.0
1,400,336 + MCAODC_23350 0.82 +1.6
1,400,337 - MCAODC_23350 0.82 +0.9
1,400,370 + MCAODC_23350 0.87 +0.6
1,400,425 + +1.6
1,400,426 - +1.0
1,400,453 + +1.0
1,400,456 + -1.6
1,400,456 + -2.0
1,400,602 + +2.0
1,400,603 - +0.6
1,400,618 + -1.4
1,400,803 + +0.8
1,400,804 - -1.0
1,400,805 + -0.4
1,400,806 - +0.3
1,400,806 - -0.7
1,400,809 + +1.6
1,400,880 + -0.5
1,401,019 - spo0J MCAODC_23355 0.31 +1.2
1,401,040 - spo0J MCAODC_23355 0.34 -1.2
1,401,073 - spo0J MCAODC_23355 0.39 +0.5
1,401,266 + spo0J MCAODC_23355 0.70 -0.4
1,401,267 - spo0J MCAODC_23355 0.70 +1.6
1,401,376 + spo0J MCAODC_23355 0.87 +0.9
1,401,376 + spo0J MCAODC_23355 0.87 +1.0
1,401,377 - spo0J MCAODC_23355 0.87 +1.0
1,401,377 - spo0J MCAODC_23355 0.87 +0.6
1,401,410 + -0.1
1,401,433 + +0.6

Or see this region's nucleotide sequence