Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_22025 and yciE are separated by 78 nucleotides yciE and yciE are separated by 36 nucleotides yciE and cotJC are separated by 18 nucleotides
MCAODC_22025: MCAODC_22025 - stress-induced acidophilic repeat motif-containing protein, at 1,185,336 to 1,185,518
_22025
MCAODC_22030: yciE - Protein YciF, at 1,185,597 to 1,186,097
yciE
MCAODC_22035: yciE - Protein YciE, at 1,186,134 to 1,186,640
yciE
MCAODC_22040: cotJC - Mn-containing catalase, at 1,186,659 to 1,187,549
cotJC
Position (kb) 1186
1187 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1185.419 kb on + strand, within MCAODC_22025 at 1185.649 kb on - strand, within yciE at 1185.711 kb on - strand, within yciE at 1185.976 kb on + strand, within yciE at 1186.061 kb on + strand at 1186.568 kb on + strand, within yciE at 1186.658 kb on + strand at 1186.686 kb on + strand at 1186.689 kb on - strand at 1186.699 kb on + strand at 1186.699 kb on + strand at 1186.699 kb on + strand at 1186.729 kb on + strand at 1186.735 kb on + strand at 1186.735 kb on + strand at 1186.782 kb on + strand, within cotJC at 1186.799 kb on - strand, within cotJC at 1186.840 kb on + strand, within cotJC at 1186.841 kb on - strand, within cotJC at 1186.855 kb on + strand, within cotJC at 1186.855 kb on + strand, within cotJC at 1186.872 kb on - strand, within cotJC at 1186.889 kb on + strand, within cotJC at 1186.889 kb on + strand, within cotJC at 1186.988 kb on - strand, within cotJC at 1187.020 kb on + strand, within cotJC at 1187.024 kb on + strand, within cotJC at 1187.056 kb on - strand, within cotJC at 1187.056 kb on - strand, within cotJC at 1187.066 kb on + strand, within cotJC at 1187.189 kb on - strand, within cotJC at 1187.286 kb on + strand, within cotJC at 1187.296 kb on + strand, within cotJC at 1187.298 kb on + strand, within cotJC at 1187.298 kb on + strand, within cotJC at 1187.298 kb on + strand, within cotJC at 1187.361 kb on + strand, within cotJC at 1187.413 kb on + strand, within cotJC at 1187.438 kb on + strand, within cotJC at 1187.443 kb on + strand, within cotJC at 1187.537 kb on + strand at 1187.565 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 1,185,419 + MCAODC_22025 0.45 +2.6 1,185,649 - yciE MCAODC_22030 0.10 -0.7 1,185,711 - yciE MCAODC_22030 0.23 +0.9 1,185,976 + yciE MCAODC_22030 0.76 -1.7 1,186,061 + +0.6 1,186,568 + yciE MCAODC_22035 0.86 -0.5 1,186,658 + +0.3 1,186,686 + +0.6 1,186,689 - -0.7 1,186,699 + +1.6 1,186,699 + +0.0 1,186,699 + -2.5 1,186,729 + -0.5 1,186,735 + -0.1 1,186,735 + +1.2 1,186,782 + cotJC MCAODC_22040 0.14 +0.2 1,186,799 - cotJC MCAODC_22040 0.16 +2.6 1,186,840 + cotJC MCAODC_22040 0.20 +3.0 1,186,841 - cotJC MCAODC_22040 0.20 +0.0 1,186,855 + cotJC MCAODC_22040 0.22 +2.9 1,186,855 + cotJC MCAODC_22040 0.22 +3.2 1,186,872 - cotJC MCAODC_22040 0.24 -1.2 1,186,889 + cotJC MCAODC_22040 0.26 -1.0 1,186,889 + cotJC MCAODC_22040 0.26 -0.4 1,186,988 - cotJC MCAODC_22040 0.37 -2.1 1,187,020 + cotJC MCAODC_22040 0.41 -0.4 1,187,024 + cotJC MCAODC_22040 0.41 +3.1 1,187,056 - cotJC MCAODC_22040 0.45 -0.1 1,187,056 - cotJC MCAODC_22040 0.45 -0.6 1,187,066 + cotJC MCAODC_22040 0.46 -0.3 1,187,189 - cotJC MCAODC_22040 0.59 +0.2 1,187,286 + cotJC MCAODC_22040 0.70 -1.2 1,187,296 + cotJC MCAODC_22040 0.71 +0.6 1,187,298 + cotJC MCAODC_22040 0.72 +0.2 1,187,298 + cotJC MCAODC_22040 0.72 +0.6 1,187,298 + cotJC MCAODC_22040 0.72 +1.6 1,187,361 + cotJC MCAODC_22040 0.79 -0.6 1,187,413 + cotJC MCAODC_22040 0.85 +0.2 1,187,438 + cotJC MCAODC_22040 0.87 +2.0 1,187,443 + cotJC MCAODC_22040 0.88 -1.0 1,187,537 + -0.9 1,187,565 + +0.8
Or see this region's nucleotide sequence