Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_20000 and MCAODC_20005 are separated by 42 nucleotides MCAODC_20005 and MCAODC_20010 are separated by 4 nucleotides MCAODC_20010 and tnp-IS3 are separated by 319 nucleotides tnp-IS3 and tnp-IS3 overlap by 1 nucleotides tnp-IS3 and MCAODC_20025 are separated by 81 nucleotides
MCAODC_20000: MCAODC_20000 - SAR-endolysin, at 821,285 to 821,818
_20000
MCAODC_20005: MCAODC_20005 - DUF1327 domain-containing protein, at 821,861 to 822,193
_20005
MCAODC_20010: MCAODC_20010 - lysis protein, at 822,198 to 822,404
_20010
MCAODC_20015: tnp-IS3 - IS3 family transposase, at 822,724 to 823,050
tnp-IS3
MCAODC_20020: tnp-IS3 - IS3 family transposase, at 823,050 to 823,937
tnp-IS3
MCAODC_20025: MCAODC_20025 - 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 824,019 to 825,869
_20025
Position (kb)
822
823
824 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 822.444 kb on + strand at 822.570 kb on - strand at 822.582 kb on - strand at 822.582 kb on - strand at 822.582 kb on - strand at 822.628 kb on + strand at 822.628 kb on + strand at 822.630 kb on + strand at 822.630 kb on + strand at 822.630 kb on + strand at 822.630 kb on + strand at 822.630 kb on + strand at 822.630 kb on + strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.634 kb on + strand at 822.634 kb on + strand at 822.634 kb on + strand at 822.634 kb on + strand at 822.635 kb on - strand at 822.635 kb on - strand at 822.635 kb on - strand at 822.635 kb on - strand at 822.652 kb on + strand at 822.652 kb on + strand at 822.653 kb on - strand at 822.661 kb on + strand at 822.697 kb on - strand at 823.947 kb on + strand at 823.981 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 822,444 + +0.7 822,570 - -0.2 822,582 - +0.4 822,582 - +0.2 822,582 - +1.7 822,628 + -1.4 822,628 + -1.2 822,630 + -1.0 822,630 + -1.4 822,630 + -0.1 822,630 + +1.7 822,630 + -2.3 822,630 + +0.1 822,631 - -2.6 822,631 - -0.1 822,631 - -1.4 822,631 - -0.0 822,631 - -0.8 822,631 - -0.8 822,631 - -1.3 822,634 + +0.1 822,634 + +0.6 822,634 + +0.1 822,634 + +2.3 822,635 - -0.9 822,635 - -0.1 822,635 - +0.1 822,635 - -1.2 822,652 + +0.7 822,652 + -0.8 822,653 - -0.7 822,661 + -1.1 822,697 - -0.6 823,947 + -0.3 823,981 + +0.3
Or see this region's nucleotide sequence