Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nimT and yeaO are separated by 54 nucleotides yeaO and yoaF are separated by 21 nucleotides yoaF and dgcP are separated by 182 nucleotides
MCAODC_18735: nimT - 2-nitroimidazole transporter, at 606,546 to 607,727
nimT
MCAODC_18740: yeaO - Uncharacterized protein YeaO, at 607,782 to 608,129
yeaO
MCAODC_18745: yoaF - DUF333 domain-containing protein, at 608,151 to 608,405
yoaF
MCAODC_18750: dgcP - diguanylate cyclase DgcP, at 608,588 to 609,613
dgcP
Position (kb) 607
608
609 Strain fitness (log2 ratio) -2
-1
0
1
2 at 606.786 kb on - strand, within nimT at 606.849 kb on + strand, within nimT at 606.854 kb on - strand, within nimT at 606.895 kb on + strand, within nimT at 606.900 kb on - strand, within nimT at 606.907 kb on + strand, within nimT at 606.923 kb on + strand, within nimT at 606.966 kb on + strand, within nimT at 607.013 kb on - strand, within nimT at 607.151 kb on - strand, within nimT at 607.151 kb on - strand, within nimT at 607.151 kb on - strand, within nimT at 607.151 kb on - strand, within nimT at 607.154 kb on + strand, within nimT at 607.154 kb on + strand, within nimT at 607.225 kb on - strand, within nimT at 607.228 kb on - strand, within nimT at 607.236 kb on - strand, within nimT at 607.315 kb on + strand, within nimT at 607.354 kb on + strand, within nimT at 607.495 kb on + strand, within nimT at 607.495 kb on + strand, within nimT at 607.614 kb on - strand at 607.629 kb on - strand at 607.666 kb on + strand at 607.676 kb on - strand at 607.728 kb on + strand at 607.738 kb on + strand at 607.738 kb on + strand at 607.739 kb on - strand at 607.739 kb on - strand at 607.739 kb on - strand at 607.740 kb on + strand at 607.787 kb on + strand at 607.806 kb on + strand at 607.806 kb on + strand at 607.983 kb on + strand, within yeaO at 607.983 kb on + strand, within yeaO at 608.065 kb on - strand, within yeaO at 608.120 kb on + strand at 608.120 kb on + strand at 608.121 kb on - strand at 608.137 kb on - strand at 608.137 kb on - strand at 608.288 kb on - strand, within yoaF at 608.425 kb on - strand at 608.494 kb on + strand at 608.495 kb on - strand at 608.497 kb on + strand at 608.530 kb on - strand at 608.571 kb on + strand at 608.747 kb on - strand, within dgcP at 608.747 kb on - strand, within dgcP at 608.747 kb on - strand, within dgcP at 608.882 kb on - strand, within dgcP at 608.951 kb on + strand, within dgcP at 609.015 kb on + strand, within dgcP at 609.021 kb on + strand, within dgcP at 609.044 kb on + strand, within dgcP at 609.044 kb on + strand, within dgcP at 609.045 kb on - strand, within dgcP at 609.046 kb on + strand, within dgcP at 609.111 kb on - strand, within dgcP
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 606,786 - nimT MCAODC_18735 0.20 +1.6 606,849 + nimT MCAODC_18735 0.26 -0.3 606,854 - nimT MCAODC_18735 0.26 -0.6 606,895 + nimT MCAODC_18735 0.30 -0.7 606,900 - nimT MCAODC_18735 0.30 +0.1 606,907 + nimT MCAODC_18735 0.31 -0.7 606,923 + nimT MCAODC_18735 0.32 +1.6 606,966 + nimT MCAODC_18735 0.36 +1.4 607,013 - nimT MCAODC_18735 0.40 -0.2 607,151 - nimT MCAODC_18735 0.51 +0.4 607,151 - nimT MCAODC_18735 0.51 -0.7 607,151 - nimT MCAODC_18735 0.51 +0.3 607,151 - nimT MCAODC_18735 0.51 +0.2 607,154 + nimT MCAODC_18735 0.51 +1.6 607,154 + nimT MCAODC_18735 0.51 +0.6 607,225 - nimT MCAODC_18735 0.57 -0.8 607,228 - nimT MCAODC_18735 0.58 +0.1 607,236 - nimT MCAODC_18735 0.58 +0.3 607,315 + nimT MCAODC_18735 0.65 -0.5 607,354 + nimT MCAODC_18735 0.68 +1.8 607,495 + nimT MCAODC_18735 0.80 +0.1 607,495 + nimT MCAODC_18735 0.80 +0.1 607,614 - -0.7 607,629 - -0.7 607,666 + +1.0 607,676 - +1.2 607,728 + -1.7 607,738 + +0.5 607,738 + +1.6 607,739 - -2.6 607,739 - +1.6 607,739 - -0.4 607,740 + +0.4 607,787 + +0.3 607,806 + +0.1 607,806 + -0.8 607,983 + yeaO MCAODC_18740 0.58 -2.1 607,983 + yeaO MCAODC_18740 0.58 -0.4 608,065 - yeaO MCAODC_18740 0.81 +0.6 608,120 + +0.6 608,120 + +1.6 608,121 - +0.9 608,137 - -0.2 608,137 - +1.6 608,288 - yoaF MCAODC_18745 0.54 -0.2 608,425 - +1.5 608,494 + +0.6 608,495 - -0.7 608,497 + +0.1 608,530 - +0.3 608,571 + -1.2 608,747 - dgcP MCAODC_18750 0.15 -1.1 608,747 - dgcP MCAODC_18750 0.15 -1.0 608,747 - dgcP MCAODC_18750 0.15 +0.6 608,882 - dgcP MCAODC_18750 0.29 -0.7 608,951 + dgcP MCAODC_18750 0.35 -1.5 609,015 + dgcP MCAODC_18750 0.42 -0.6 609,021 + dgcP MCAODC_18750 0.42 +0.6 609,044 + dgcP MCAODC_18750 0.44 -0.9 609,044 + dgcP MCAODC_18750 0.44 +0.8 609,045 - dgcP MCAODC_18750 0.45 -1.3 609,046 + dgcP MCAODC_18750 0.45 -0.7 609,111 - dgcP MCAODC_18750 0.51 -0.7
Or see this region's nucleotide sequence