Strain Fitness in Escherichia coli ECRC101 around MCAODC_17665

Experiment: EV240

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntclcB and bioD overlap by 48 nucleotidesbioD and mlc are separated by 124 nucleotides MCAODC_17660: clcB - voltage-gated ClC-type chloride channel ClcB, at 394,385 to 395,641 clcB MCAODC_17665: bioD - dethiobiotin synthase, at 395,594 to 396,289 bioD MCAODC_17670: mlc - DNA-binding transcriptional repressor Mlc, at 396,414 to 397,634 mlc Position (kb) 395 396 397Strain fitness (log2 ratio) -1 0 1 2 3at 394.691 kb on - strand, within clcBat 394.717 kb on - strand, within clcBat 394.916 kb on - strand, within clcBat 395.056 kb on + strand, within clcBat 395.062 kb on + strand, within clcBat 395.106 kb on + strand, within clcBat 395.239 kb on - strand, within clcBat 395.390 kb on + strand, within clcBat 395.390 kb on + strand, within clcBat 395.390 kb on + strand, within clcBat 395.399 kb on - strand, within clcBat 395.409 kb on + strand, within clcBat 395.409 kb on + strand, within clcBat 395.498 kb on - strand, within clcBat 395.514 kb on + strand, within clcBat 395.541 kb on + strandat 395.541 kb on + strandat 395.569 kb on - strandat 395.636 kb on - strandat 395.640 kb on - strandat 395.640 kb on - strandat 395.650 kb on - strandat 395.650 kb on - strandat 396.178 kb on + strand, within bioDat 396.318 kb on + strandat 396.321 kb on - strandat 396.337 kb on + strandat 396.351 kb on + strandat 396.356 kb on + strandat 396.357 kb on - strandat 396.357 kb on - strandat 396.451 kb on + strandat 396.451 kb on + strandat 396.669 kb on + strand, within mlcat 396.816 kb on - strand, within mlcat 396.878 kb on - strand, within mlcat 396.885 kb on + strand, within mlcat 396.886 kb on - strand, within mlcat 396.886 kb on - strand, within mlcat 397.144 kb on - strand, within mlc

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV240
remove
394,691 - clcB MCAODC_17660 0.24 +0.6
394,717 - clcB MCAODC_17660 0.26 +1.6
394,916 - clcB MCAODC_17660 0.42 +1.6
395,056 + clcB MCAODC_17660 0.53 +1.0
395,062 + clcB MCAODC_17660 0.54 -1.4
395,106 + clcB MCAODC_17660 0.57 -0.0
395,239 - clcB MCAODC_17660 0.68 -0.6
395,390 + clcB MCAODC_17660 0.80 +0.5
395,390 + clcB MCAODC_17660 0.80 -0.4
395,390 + clcB MCAODC_17660 0.80 -1.2
395,399 - clcB MCAODC_17660 0.81 -0.0
395,409 + clcB MCAODC_17660 0.81 -0.0
395,409 + clcB MCAODC_17660 0.81 +0.2
395,498 - clcB MCAODC_17660 0.89 +1.2
395,514 + clcB MCAODC_17660 0.90 +1.2
395,541 + +0.9
395,541 + +1.0
395,569 - +0.2
395,636 - +1.1
395,640 - +1.0
395,640 - -0.1
395,650 - -0.8
395,650 - +2.3
396,178 + bioD MCAODC_17665 0.84 +0.6
396,318 + +0.6
396,321 - -0.0
396,337 + -0.2
396,351 + -1.2
396,356 + -0.6
396,357 - +0.3
396,357 - -1.0
396,451 + +0.8
396,451 + +1.0
396,669 + mlc MCAODC_17670 0.21 -1.5
396,816 - mlc MCAODC_17670 0.33 -1.7
396,878 - mlc MCAODC_17670 0.38 -1.6
396,885 + mlc MCAODC_17670 0.39 +2.9
396,886 - mlc MCAODC_17670 0.39 +2.6
396,886 - mlc MCAODC_17670 0.39 +1.6
397,144 - mlc MCAODC_17670 0.60 -0.0

Or see this region's nucleotide sequence