Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydcL and MCAODC_16325 are separated by 34 nucleotides MCAODC_16325 and MCAODC_16330 are separated by 43 nucleotides MCAODC_16330 and sutR are separated by 91 nucleotides sutR and rlhA are separated by 30 nucleotides
MCAODC_16320: ydcL - Uncharacterized lipoprotein YdcL, at 157,531 to 158,199
ydcL
MCAODC_16325: MCAODC_16325 - Benzoate membrane transport protein, at 158,234 to 158,512
_16325
MCAODC_16330: MCAODC_16330 - Benzoate transport protein, at 158,556 to 159,407
_16330
MCAODC_16335: sutR - DNA-binding transcriptional regulator SutR, at 159,499 to 160,035
sutR
MCAODC_16340: rlhA - 23S rRNA 5-hydroxycytidine C2501 synthase, at 160,066 to 162,069
rlhA
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 157.672 kb on - strand, within ydcL at 157.723 kb on + strand, within ydcL at 157.753 kb on + strand, within ydcL at 157.754 kb on - strand, within ydcL at 157.816 kb on + strand, within ydcL at 157.817 kb on - strand, within ydcL at 157.854 kb on + strand, within ydcL at 157.854 kb on + strand, within ydcL at 157.855 kb on - strand, within ydcL at 157.867 kb on - strand, within ydcL at 157.920 kb on + strand, within ydcL at 158.058 kb on + strand, within ydcL at 158.148 kb on + strand at 158.218 kb on + strand at 158.492 kb on - strand at 158.804 kb on + strand, within MCAODC_16330 at 158.805 kb on - strand, within MCAODC_16330 at 158.805 kb on - strand, within MCAODC_16330 at 158.807 kb on - strand, within MCAODC_16330 at 158.807 kb on - strand, within MCAODC_16330 at 158.948 kb on + strand, within MCAODC_16330 at 159.096 kb on + strand, within MCAODC_16330 at 159.096 kb on + strand, within MCAODC_16330 at 159.097 kb on - strand, within MCAODC_16330 at 159.138 kb on - strand, within MCAODC_16330 at 159.219 kb on + strand, within MCAODC_16330 at 159.219 kb on + strand, within MCAODC_16330 at 159.220 kb on - strand, within MCAODC_16330 at 159.407 kb on + strand at 159.407 kb on + strand at 159.431 kb on - strand at 159.534 kb on + strand at 159.542 kb on + strand at 159.542 kb on + strand at 159.775 kb on + strand, within sutR at 159.927 kb on + strand, within sutR at 159.969 kb on + strand, within sutR at 159.970 kb on - strand, within sutR at 159.973 kb on + strand, within sutR at 160.094 kb on + strand at 160.094 kb on + strand at 160.094 kb on + strand at 160.094 kb on + strand at 160.115 kb on + strand at 160.201 kb on + strand at 160.202 kb on - strand at 160.242 kb on + strand at 160.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 157,672 - ydcL MCAODC_16320 0.21 +0.6 157,723 + ydcL MCAODC_16320 0.29 +0.8 157,753 + ydcL MCAODC_16320 0.33 +1.6 157,754 - ydcL MCAODC_16320 0.33 +0.6 157,816 + ydcL MCAODC_16320 0.43 -1.4 157,817 - ydcL MCAODC_16320 0.43 +1.0 157,854 + ydcL MCAODC_16320 0.48 +1.6 157,854 + ydcL MCAODC_16320 0.48 +1.0 157,855 - ydcL MCAODC_16320 0.48 +0.6 157,867 - ydcL MCAODC_16320 0.50 +0.6 157,920 + ydcL MCAODC_16320 0.58 +0.5 158,058 + ydcL MCAODC_16320 0.79 -0.6 158,148 + +0.6 158,218 + +0.2 158,492 - +1.2 158,804 + MCAODC_16330 0.29 +0.0 158,805 - MCAODC_16330 0.29 -0.1 158,805 - MCAODC_16330 0.29 -3.0 158,807 - MCAODC_16330 0.29 +1.6 158,807 - MCAODC_16330 0.29 -1.7 158,948 + MCAODC_16330 0.46 +0.6 159,096 + MCAODC_16330 0.63 -1.0 159,096 + MCAODC_16330 0.63 -2.2 159,097 - MCAODC_16330 0.63 +0.8 159,138 - MCAODC_16330 0.68 +0.0 159,219 + MCAODC_16330 0.78 +1.0 159,219 + MCAODC_16330 0.78 -0.4 159,220 - MCAODC_16330 0.78 +2.0 159,407 + +0.6 159,407 + -1.4 159,431 - +1.1 159,534 + -1.2 159,542 + +0.4 159,542 + -1.0 159,775 + sutR MCAODC_16335 0.51 +0.6 159,927 + sutR MCAODC_16335 0.80 +0.6 159,969 + sutR MCAODC_16335 0.88 -0.7 159,970 - sutR MCAODC_16335 0.88 +0.2 159,973 + sutR MCAODC_16335 0.88 +3.6 160,094 + -0.7 160,094 + +0.2 160,094 + -0.7 160,094 + +0.6 160,115 + -1.4 160,201 + -1.5 160,202 - -1.5 160,242 + +0.9 160,257 + -0.1
Or see this region's nucleotide sequence