Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycjY and pgrR are separated by 137 nucleotides pgrR and mppA are separated by 335 nucleotides
MCAODC_16000: ycjY - Uncharacterized protein YcjY, at 90,280 to 91,200
ycjY
MCAODC_16005: pgrR - DNA-binding transcriptional regulator PgrR, at 91,338 to 92,237
pgrR
MCAODC_16010: mppA - murein tripeptide ABC transporter substrate-binding protein MppA, at 92,573 to 94,186
mppA
Position (kb) 91
92
93 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 90.348 kb on - strand at 90.414 kb on - strand, within ycjY at 90.496 kb on - strand, within ycjY at 90.510 kb on - strand, within ycjY at 90.510 kb on - strand, within ycjY at 90.514 kb on - strand, within ycjY at 90.514 kb on - strand, within ycjY at 90.651 kb on + strand, within ycjY at 90.673 kb on - strand, within ycjY at 90.676 kb on - strand, within ycjY at 90.834 kb on + strand, within ycjY at 90.834 kb on + strand, within ycjY at 90.834 kb on + strand, within ycjY at 90.835 kb on - strand, within ycjY at 90.835 kb on - strand, within ycjY at 90.888 kb on - strand, within ycjY at 90.998 kb on + strand, within ycjY at 91.006 kb on - strand, within ycjY at 91.040 kb on + strand, within ycjY at 91.040 kb on + strand, within ycjY at 91.040 kb on + strand, within ycjY at 91.040 kb on + strand, within ycjY at 91.041 kb on - strand, within ycjY at 91.133 kb on + strand at 91.164 kb on + strand at 91.192 kb on - strand at 91.244 kb on + strand at 91.251 kb on - strand at 91.252 kb on + strand at 91.252 kb on + strand at 91.253 kb on - strand at 91.253 kb on - strand at 91.266 kb on + strand at 91.266 kb on + strand at 91.266 kb on + strand at 91.267 kb on - strand at 91.324 kb on + strand at 91.394 kb on + strand at 91.394 kb on + strand at 91.571 kb on - strand, within pgrR at 91.571 kb on - strand, within pgrR at 91.624 kb on + strand, within pgrR at 91.625 kb on - strand, within pgrR at 91.625 kb on - strand, within pgrR at 91.628 kb on + strand, within pgrR at 91.628 kb on + strand, within pgrR at 91.629 kb on - strand, within pgrR at 91.629 kb on - strand, within pgrR at 91.897 kb on + strand, within pgrR at 91.900 kb on + strand, within pgrR at 91.960 kb on + strand, within pgrR at 92.064 kb on + strand, within pgrR at 92.223 kb on - strand at 92.242 kb on - strand at 92.279 kb on - strand at 92.344 kb on + strand at 92.400 kb on + strand at 92.400 kb on + strand at 92.401 kb on - strand at 92.534 kb on - strand at 92.572 kb on + strand at 92.662 kb on - strand at 92.836 kb on + strand, within mppA at 93.011 kb on - strand, within mppA at 93.065 kb on - strand, within mppA at 93.065 kb on - strand, within mppA at 93.065 kb on - strand, within mppA at 93.207 kb on - strand, within mppA
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 90,348 - -0.9 90,414 - ycjY MCAODC_16000 0.15 +0.5 90,496 - ycjY MCAODC_16000 0.23 +1.1 90,510 - ycjY MCAODC_16000 0.25 +0.2 90,510 - ycjY MCAODC_16000 0.25 +3.0 90,514 - ycjY MCAODC_16000 0.25 +0.7 90,514 - ycjY MCAODC_16000 0.25 +0.6 90,651 + ycjY MCAODC_16000 0.40 +0.6 90,673 - ycjY MCAODC_16000 0.43 +0.3 90,676 - ycjY MCAODC_16000 0.43 +0.6 90,834 + ycjY MCAODC_16000 0.60 +0.1 90,834 + ycjY MCAODC_16000 0.60 -0.9 90,834 + ycjY MCAODC_16000 0.60 +0.2 90,835 - ycjY MCAODC_16000 0.60 +1.4 90,835 - ycjY MCAODC_16000 0.60 +1.6 90,888 - ycjY MCAODC_16000 0.66 +1.6 90,998 + ycjY MCAODC_16000 0.78 +0.6 91,006 - ycjY MCAODC_16000 0.79 -0.7 91,040 + ycjY MCAODC_16000 0.83 +1.3 91,040 + ycjY MCAODC_16000 0.83 -0.4 91,040 + ycjY MCAODC_16000 0.83 +2.2 91,040 + ycjY MCAODC_16000 0.83 +0.9 91,041 - ycjY MCAODC_16000 0.83 -0.5 91,133 + +0.2 91,164 + -2.5 91,192 - +0.6 91,244 + +0.6 91,251 - -0.4 91,252 + -2.4 91,252 + -0.9 91,253 - +0.1 91,253 - +0.1 91,266 + +0.8 91,266 + -0.4 91,266 + -0.9 91,267 - -0.9 91,324 + +1.6 91,394 + -1.3 91,394 + -0.2 91,571 - pgrR MCAODC_16005 0.26 +0.5 91,571 - pgrR MCAODC_16005 0.26 -2.1 91,624 + pgrR MCAODC_16005 0.32 -1.5 91,625 - pgrR MCAODC_16005 0.32 -1.4 91,625 - pgrR MCAODC_16005 0.32 +2.2 91,628 + pgrR MCAODC_16005 0.32 -0.7 91,628 + pgrR MCAODC_16005 0.32 -0.5 91,629 - pgrR MCAODC_16005 0.32 -1.7 91,629 - pgrR MCAODC_16005 0.32 +1.4 91,897 + pgrR MCAODC_16005 0.62 +0.6 91,900 + pgrR MCAODC_16005 0.62 +1.6 91,960 + pgrR MCAODC_16005 0.69 +2.2 92,064 + pgrR MCAODC_16005 0.81 -1.3 92,223 - +4.4 92,242 - +0.1 92,279 - -1.5 92,344 + +4.0 92,400 + -1.9 92,400 + +1.6 92,401 - +1.9 92,534 - -2.3 92,572 + -0.5 92,662 - +2.1 92,836 + mppA MCAODC_16010 0.16 -0.5 93,011 - mppA MCAODC_16010 0.27 -1.2 93,065 - mppA MCAODC_16010 0.30 -0.7 93,065 - mppA MCAODC_16010 0.30 +1.7 93,065 - mppA MCAODC_16010 0.30 +1.6 93,207 - mppA MCAODC_16010 0.39 +1.1
Or see this region's nucleotide sequence