Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt greB and ompR_G63V are separated by 227 nucleotides ompR_G63V and envZ overlap by 4 nucleotides envZ and pckA are separated by 75 nucleotides
MCAODC_07560: greB - transcription elongation factor GreB, at 1,536,713 to 1,537,189
greB
MCAODC_07565: ompR_G63V - two-component system response regulator OmpR, at 1,537,417 to 1,538,136
_G63V
MCAODC_07570: envZ - two-component system sensor histidine kinase EnvZ, at 1,538,133 to 1,539,485
envZ
MCAODC_07575: pckA - phosphoenolpyruvate carboxykinase (ATP), at 1,539,561 to 1,541,183
pckA
Position (kb) 1538
1539
1540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.136 kb on - strand, within greB at 1537.136 kb on - strand, within greB at 1537.159 kb on - strand at 1537.232 kb on + strand at 1537.233 kb on - strand at 1537.234 kb on + strand at 1537.235 kb on - strand at 1537.245 kb on + strand at 1537.246 kb on - strand at 1537.246 kb on - strand at 1537.246 kb on - strand at 1537.284 kb on + strand at 1537.284 kb on + strand at 1537.288 kb on + strand at 1537.289 kb on - strand at 1537.289 kb on - strand at 1537.289 kb on - strand at 1537.289 kb on - strand at 1537.300 kb on + strand at 1537.301 kb on - strand at 1537.343 kb on + strand at 1537.344 kb on - strand at 1537.375 kb on + strand at 1537.376 kb on - strand at 1537.376 kb on - strand at 1537.376 kb on - strand at 1537.383 kb on + strand at 1537.409 kb on + strand at 1537.410 kb on - strand at 1537.430 kb on - strand at 1537.483 kb on + strand at 1537.484 kb on - strand at 1537.570 kb on - strand, within ompR_G63V at 1537.570 kb on - strand, within ompR_G63V at 1537.570 kb on - strand, within ompR_G63V at 1537.583 kb on + strand, within ompR_G63V at 1537.583 kb on + strand, within ompR_G63V at 1537.583 kb on + strand, within ompR_G63V at 1537.583 kb on + strand, within ompR_G63V at 1537.589 kb on + strand, within ompR_G63V at 1537.589 kb on + strand, within ompR_G63V at 1537.590 kb on - strand, within ompR_G63V at 1537.590 kb on - strand, within ompR_G63V at 1537.656 kb on + strand, within ompR_G63V at 1537.657 kb on - strand, within ompR_G63V at 1537.657 kb on - strand, within ompR_G63V at 1537.738 kb on - strand, within ompR_G63V at 1537.796 kb on + strand, within ompR_G63V at 1537.826 kb on + strand, within ompR_G63V at 1537.965 kb on + strand, within ompR_G63V at 1538.104 kb on + strand at 1538.104 kb on + strand at 1538.128 kb on - strand at 1538.174 kb on + strand at 1538.174 kb on + strand at 1538.174 kb on + strand at 1538.174 kb on + strand at 1538.175 kb on - strand at 1538.175 kb on - strand at 1538.224 kb on - strand at 1538.224 kb on - strand at 1538.274 kb on - strand, within envZ at 1538.297 kb on + strand, within envZ at 1538.297 kb on + strand, within envZ at 1538.297 kb on + strand, within envZ at 1538.298 kb on - strand, within envZ at 1538.298 kb on - strand, within envZ at 1538.298 kb on - strand, within envZ at 1538.373 kb on + strand, within envZ at 1538.373 kb on + strand, within envZ at 1538.373 kb on + strand, within envZ at 1538.374 kb on - strand, within envZ at 1538.445 kb on + strand, within envZ at 1538.446 kb on - strand, within envZ at 1538.559 kb on - strand, within envZ at 1538.620 kb on - strand, within envZ at 1538.621 kb on + strand, within envZ at 1538.621 kb on + strand, within envZ at 1538.622 kb on - strand, within envZ at 1538.622 kb on - strand, within envZ at 1538.622 kb on - strand, within envZ at 1538.622 kb on - strand, within envZ at 1538.622 kb on - strand, within envZ at 1538.638 kb on + strand, within envZ at 1538.638 kb on + strand, within envZ at 1538.732 kb on + strand, within envZ at 1538.754 kb on + strand, within envZ at 1538.813 kb on + strand, within envZ at 1538.854 kb on + strand, within envZ at 1538.855 kb on - strand, within envZ at 1538.871 kb on - strand, within envZ at 1538.885 kb on + strand, within envZ at 1538.946 kb on - strand, within envZ at 1538.991 kb on + strand, within envZ at 1539.043 kb on + strand, within envZ at 1539.281 kb on + strand, within envZ at 1539.281 kb on + strand, within envZ at 1539.281 kb on + strand, within envZ at 1539.281 kb on + strand, within envZ at 1539.281 kb on + strand, within envZ at 1539.281 kb on + strand, within envZ at 1539.281 kb on + strand, within envZ at 1539.281 kb on + strand, within envZ at 1539.282 kb on - strand, within envZ at 1539.282 kb on - strand, within envZ at 1539.282 kb on - strand, within envZ at 1539.282 kb on - strand, within envZ at 1539.282 kb on - strand, within envZ at 1539.282 kb on - strand, within envZ at 1539.282 kb on - strand, within envZ at 1539.282 kb on - strand, within envZ at 1539.344 kb on - strand, within envZ at 1539.365 kb on + strand at 1539.366 kb on - strand at 1539.483 kb on + strand at 1539.488 kb on - strand at 1539.523 kb on + strand at 1539.524 kb on - strand at 1539.524 kb on - strand at 1539.524 kb on - strand at 1539.525 kb on + strand at 1539.526 kb on - strand at 1539.526 kb on - strand at 1539.537 kb on + strand at 1539.538 kb on - strand at 1539.541 kb on + strand at 1539.542 kb on - strand at 1539.542 kb on - strand at 1539.542 kb on - strand at 1539.563 kb on - strand at 1539.583 kb on - strand at 1539.613 kb on + strand at 1539.613 kb on + strand at 1539.614 kb on - strand at 1539.614 kb on - strand at 1539.614 kb on - strand at 1539.614 kb on - strand at 1539.614 kb on - strand at 1539.617 kb on + strand at 1539.685 kb on + strand at 1539.686 kb on - strand at 1539.686 kb on - strand at 1539.686 kb on - strand at 1539.686 kb on - strand at 1539.692 kb on + strand at 1539.749 kb on + strand, within pckA at 1539.779 kb on + strand, within pckA at 1539.828 kb on - strand, within pckA at 1539.874 kb on + strand, within pckA at 1539.875 kb on - strand, within pckA at 1539.875 kb on - strand, within pckA at 1539.899 kb on + strand, within pckA at 1539.899 kb on + strand, within pckA at 1539.899 kb on + strand, within pckA at 1539.900 kb on - strand, within pckA at 1539.900 kb on - strand, within pckA at 1539.900 kb on - strand, within pckA at 1539.923 kb on - strand, within pckA at 1540.112 kb on + strand, within pckA at 1540.149 kb on - strand, within pckA at 1540.168 kb on + strand, within pckA at 1540.168 kb on + strand, within pckA at 1540.168 kb on + strand, within pckA at 1540.169 kb on - strand, within pckA at 1540.282 kb on + strand, within pckA at 1540.283 kb on - strand, within pckA at 1540.283 kb on - strand, within pckA at 1540.347 kb on - strand, within pckA
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 1,537,135 + greB MCAODC_07560 0.88 +0.3 1,537,135 + greB MCAODC_07560 0.88 -1.2 1,537,135 + greB MCAODC_07560 0.88 +0.0 1,537,135 + greB MCAODC_07560 0.88 -0.6 1,537,135 + greB MCAODC_07560 0.88 -0.7 1,537,135 + greB MCAODC_07560 0.88 -1.6 1,537,135 + greB MCAODC_07560 0.88 +1.8 1,537,135 + greB MCAODC_07560 0.88 -3.0 1,537,136 - greB MCAODC_07560 0.89 +0.5 1,537,136 - greB MCAODC_07560 0.89 +0.2 1,537,159 - +1.4 1,537,232 + -0.9 1,537,233 - -0.6 1,537,234 + -1.1 1,537,235 - -0.8 1,537,245 + -0.2 1,537,246 - +0.0 1,537,246 - -0.2 1,537,246 - -0.9 1,537,284 + +0.8 1,537,284 + +0.5 1,537,288 + -1.6 1,537,289 - -1.1 1,537,289 - +0.2 1,537,289 - -0.8 1,537,289 - -2.2 1,537,300 + +0.0 1,537,301 - -1.0 1,537,343 + -1.5 1,537,344 - +1.3 1,537,375 + -0.2 1,537,376 - -0.2 1,537,376 - -0.6 1,537,376 - +0.2 1,537,383 + +0.3 1,537,409 + +0.5 1,537,410 - -0.6 1,537,430 - +0.5 1,537,483 + -0.2 1,537,484 - +0.4 1,537,570 - ompR_G63V MCAODC_07565 0.21 +1.8 1,537,570 - ompR_G63V MCAODC_07565 0.21 -0.6 1,537,570 - ompR_G63V MCAODC_07565 0.21 -0.1 1,537,583 + ompR_G63V MCAODC_07565 0.23 +0.5 1,537,583 + ompR_G63V MCAODC_07565 0.23 -0.5 1,537,583 + ompR_G63V MCAODC_07565 0.23 -1.2 1,537,583 + ompR_G63V MCAODC_07565 0.23 +0.4 1,537,589 + ompR_G63V MCAODC_07565 0.24 -1.4 1,537,589 + ompR_G63V MCAODC_07565 0.24 -1.1 1,537,590 - ompR_G63V MCAODC_07565 0.24 -0.8 1,537,590 - ompR_G63V MCAODC_07565 0.24 +0.4 1,537,656 + ompR_G63V MCAODC_07565 0.33 -1.1 1,537,657 - ompR_G63V MCAODC_07565 0.33 -0.7 1,537,657 - ompR_G63V MCAODC_07565 0.33 +2.8 1,537,738 - ompR_G63V MCAODC_07565 0.45 -0.2 1,537,796 + ompR_G63V MCAODC_07565 0.53 -0.8 1,537,826 + ompR_G63V MCAODC_07565 0.57 +0.4 1,537,965 + ompR_G63V MCAODC_07565 0.76 +0.8 1,538,104 + +0.2 1,538,104 + +1.8 1,538,128 - -0.2 1,538,174 + -1.2 1,538,174 + +0.3 1,538,174 + +0.2 1,538,174 + -1.6 1,538,175 - +1.8 1,538,175 - -0.8 1,538,224 - +0.9 1,538,224 - +0.8 1,538,274 - envZ MCAODC_07570 0.10 +1.0 1,538,297 + envZ MCAODC_07570 0.12 -0.4 1,538,297 + envZ MCAODC_07570 0.12 -2.5 1,538,297 + envZ MCAODC_07570 0.12 +0.8 1,538,298 - envZ MCAODC_07570 0.12 -0.8 1,538,298 - envZ MCAODC_07570 0.12 +0.2 1,538,298 - envZ MCAODC_07570 0.12 -2.1 1,538,373 + envZ MCAODC_07570 0.18 +0.8 1,538,373 + envZ MCAODC_07570 0.18 +2.8 1,538,373 + envZ MCAODC_07570 0.18 +2.2 1,538,374 - envZ MCAODC_07570 0.18 +0.2 1,538,445 + envZ MCAODC_07570 0.23 -0.6 1,538,446 - envZ MCAODC_07570 0.23 -0.4 1,538,559 - envZ MCAODC_07570 0.31 -1.2 1,538,620 - envZ MCAODC_07570 0.36 +0.2 1,538,621 + envZ MCAODC_07570 0.36 +1.3 1,538,621 + envZ MCAODC_07570 0.36 +0.6 1,538,622 - envZ MCAODC_07570 0.36 +1.2 1,538,622 - envZ MCAODC_07570 0.36 +0.5 1,538,622 - envZ MCAODC_07570 0.36 +0.2 1,538,622 - envZ MCAODC_07570 0.36 -1.1 1,538,622 - envZ MCAODC_07570 0.36 +0.8 1,538,638 + envZ MCAODC_07570 0.37 -0.6 1,538,638 + envZ MCAODC_07570 0.37 -1.1 1,538,732 + envZ MCAODC_07570 0.44 +0.2 1,538,754 + envZ MCAODC_07570 0.46 -0.7 1,538,813 + envZ MCAODC_07570 0.50 -0.6 1,538,854 + envZ MCAODC_07570 0.53 +0.0 1,538,855 - envZ MCAODC_07570 0.53 -1.8 1,538,871 - envZ MCAODC_07570 0.55 +1.8 1,538,885 + envZ MCAODC_07570 0.56 +3.3 1,538,946 - envZ MCAODC_07570 0.60 -1.3 1,538,991 + envZ MCAODC_07570 0.63 -0.4 1,539,043 + envZ MCAODC_07570 0.67 -0.2 1,539,281 + envZ MCAODC_07570 0.85 -0.2 1,539,281 + envZ MCAODC_07570 0.85 +2.3 1,539,281 + envZ MCAODC_07570 0.85 -1.4 1,539,281 + envZ MCAODC_07570 0.85 -0.6 1,539,281 + envZ MCAODC_07570 0.85 +0.2 1,539,281 + envZ MCAODC_07570 0.85 +0.1 1,539,281 + envZ MCAODC_07570 0.85 +0.2 1,539,281 + envZ MCAODC_07570 0.85 -1.3 1,539,282 - envZ MCAODC_07570 0.85 -2.5 1,539,282 - envZ MCAODC_07570 0.85 +1.8 1,539,282 - envZ MCAODC_07570 0.85 -2.1 1,539,282 - envZ MCAODC_07570 0.85 -1.4 1,539,282 - envZ MCAODC_07570 0.85 -1.6 1,539,282 - envZ MCAODC_07570 0.85 -1.8 1,539,282 - envZ MCAODC_07570 0.85 -1.2 1,539,282 - envZ MCAODC_07570 0.85 +0.7 1,539,344 - envZ MCAODC_07570 0.90 -1.2 1,539,365 + -0.8 1,539,366 - -2.2 1,539,483 + +0.4 1,539,488 - +0.4 1,539,523 + -0.5 1,539,524 - +0.8 1,539,524 - -0.3 1,539,524 - -0.7 1,539,525 + -1.1 1,539,526 - -1.7 1,539,526 - -0.4 1,539,537 + +1.3 1,539,538 - -1.6 1,539,541 + +0.2 1,539,542 - -0.4 1,539,542 - -1.2 1,539,542 - +0.9 1,539,563 - -0.7 1,539,583 - -2.7 1,539,613 + -0.1 1,539,613 + +0.0 1,539,614 - -1.2 1,539,614 - -0.0 1,539,614 - +1.5 1,539,614 - +0.4 1,539,614 - +0.1 1,539,617 + -0.6 1,539,685 + -0.5 1,539,686 - +1.0 1,539,686 - +0.2 1,539,686 - +0.2 1,539,686 - -0.7 1,539,692 + +0.8 1,539,749 + pckA MCAODC_07575 0.12 -0.8 1,539,779 + pckA MCAODC_07575 0.13 -1.1 1,539,828 - pckA MCAODC_07575 0.16 +1.8 1,539,874 + pckA MCAODC_07575 0.19 -0.2 1,539,875 - pckA MCAODC_07575 0.19 -0.2 1,539,875 - pckA MCAODC_07575 0.19 +0.6 1,539,899 + pckA MCAODC_07575 0.21 -1.6 1,539,899 + pckA MCAODC_07575 0.21 -0.8 1,539,899 + pckA MCAODC_07575 0.21 +1.8 1,539,900 - pckA MCAODC_07575 0.21 +3.3 1,539,900 - pckA MCAODC_07575 0.21 -0.1 1,539,900 - pckA MCAODC_07575 0.21 -1.9 1,539,923 - pckA MCAODC_07575 0.22 +0.6 1,540,112 + pckA MCAODC_07575 0.34 -1.4 1,540,149 - pckA MCAODC_07575 0.36 -0.4 1,540,168 + pckA MCAODC_07575 0.37 -1.7 1,540,168 + pckA MCAODC_07575 0.37 -1.7 1,540,168 + pckA MCAODC_07575 0.37 -0.2 1,540,169 - pckA MCAODC_07575 0.37 -0.5 1,540,282 + pckA MCAODC_07575 0.44 -0.1 1,540,283 - pckA MCAODC_07575 0.44 -0.6 1,540,283 - pckA MCAODC_07575 0.44 +0.3 1,540,347 - pckA MCAODC_07575 0.48 +0.5
Or see this region's nucleotide sequence