Strain Fitness in Escherichia coli ECRC101 around MCAODC_07240

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsY and ftsE are separated by 2 nucleotidesftsE and ftsX overlap by 8 nucleotidesftsX and rpoH are separated by 244 nucleotides MCAODC_07230: ftsY - signal recognition particle-docking protein FtsY, at 1,462,705 to 1,464,201 ftsY MCAODC_07235: ftsE - cell division ATP-binding protein FtsE, at 1,464,204 to 1,464,872 ftsE MCAODC_07240: ftsX - permease-like cell division protein FtsX, at 1,464,865 to 1,465,923 ftsX MCAODC_07245: rpoH - RNA polymerase sigma factor RpoH, at 1,466,168 to 1,467,022 rpoH Position (kb) 1464 1465 1466Strain fitness (log2 ratio) -2 -1 0 1at 1465.921 kb on + strandat 1465.922 kb on - strandat 1465.925 kb on - strandat 1465.936 kb on - strandat 1465.936 kb on - strandat 1465.937 kb on + strandat 1465.937 kb on + strandat 1465.937 kb on + strandat 1465.937 kb on + strandat 1465.938 kb on - strandat 1465.938 kb on - strandat 1465.938 kb on - strandat 1465.996 kb on + strandat 1466.007 kb on + strandat 1466.008 kb on - strandat 1466.008 kb on - strandat 1466.008 kb on - strandat 1466.025 kb on + strandat 1466.105 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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1,465,921 + +0.1
1,465,922 - -0.5
1,465,925 - +0.7
1,465,936 - +0.7
1,465,936 - -0.7
1,465,937 + +1.2
1,465,937 + -1.9
1,465,937 + +0.3
1,465,937 + -0.4
1,465,938 - -0.2
1,465,938 - -0.2
1,465,938 - -0.2
1,465,996 + -0.1
1,466,007 + -0.5
1,466,008 - -0.1
1,466,008 - -0.3
1,466,008 - -0.6
1,466,025 + +1.1
1,466,105 + +0.7

Or see this region's nucleotide sequence